EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAGG00000009758 (Gene tree)
Gene ID: -
Gene Symbol: TRUB1
Alias: PUS4
Full Name: TruB pseudouridine synthase family member 1
Gene Type: protein_coding
Species: Gopherus_agassizii
Status: putative
Strand: Plus strand
Length: 48047 bases
Position: chrPPEB01008585.1:3204-51250
Accession: 16060
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAGP00000012783	TruB_N	PF01509.18	9.2e-50	1	1
ENSGAGP00000012786	TruB_N	PF01509.18	1.9e-49	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAGT00000014650	TRUB1-201	1050	-	ENSGAGP00000012783	349 (aa)	-	-
ENSGAGT00000014653	TRUB1-202	1485	-	ENSGAGP00000012786	494 (aa)	-	-

Gene Model

Click here to download ENSGAGG00000009758's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAGG00000009758's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAGG00000009758	TRUB1	56	32.323	ENSGAGG00000022872	TRUB2	61	32.323

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAGG00000009758	TRUB1	81	77.817	ENSG00000165832	TRUB1	83	77.241	Homo_sapiens
ENSGAGG00000009758	TRUB1	70	71.721	ENSAPOG00000020565	trub1	89	71.429	Acanthochromis_polyacanthus
ENSGAGG00000009758	TRUB1	81	77.622	ENSAMEG00000014931	TRUB1	88	72.990	Ailuropoda_melanoleuca
ENSGAGG00000009758	TRUB1	70	65.714	ENSACIG00000003060	trub1	82	65.714	Amphilophus_citrinellus
ENSGAGG00000009758	TRUB1	70	71.721	ENSAOCG00000017188	trub1	89	71.429	Amphiprion_ocellaris
ENSGAGG00000009758	TRUB1	70	71.020	ENSAPEG00000015209	trub1	89	71.020	Amphiprion_percula
ENSGAGG00000009758	TRUB1	69	72.199	ENSATEG00000023291	trub1	87	72.314	Anabas_testudineus
ENSGAGG00000009758	TRUB1	77	84.758	ENSAPLG00000006808	TRUB1	99	83.696	Anas_platyrhynchos
ENSGAGG00000009758	TRUB1	78	76.015	ENSACAG00000009282	TRUB1	97	77.323	Anolis_carolinensis
ENSGAGG00000009758	TRUB1	81	78.169	ENSANAG00000022870	TRUB1	83	77.320	Aotus_nancymaae
ENSGAGG00000009758	TRUB1	70	71.020	ENSACLG00000000823	trub1	88	71.020	Astatotilapia_calliptera
ENSGAGG00000009758	TRUB1	70	69.796	ENSAMXG00000015845	trub1	85	68.504	Astyanax_mexicanus
ENSGAGG00000009758	TRUB1	81	77.817	ENSBTAG00000012955	TRUB1	88	73.139	Bos_taurus
ENSGAGG00000009758	TRUB1	81	78.169	ENSCJAG00000047815	TRUB1	88	73.786	Callithrix_jacchus
ENSGAGG00000009758	TRUB1	81	78.092	ENSCAFG00000011688	TRUB1	88	73.463	Canis_familiaris
ENSGAGG00000009758	TRUB1	81	78.169	ENSCAFG00020013237	TRUB1	88	73.463	Canis_lupus_dingo
ENSGAGG00000009758	TRUB1	81	78.169	ENSCHIG00000020884	TRUB1	89	75.503	Capra_hircus
ENSGAGG00000009758	TRUB1	81	77.465	ENSTSYG00000000446	TRUB1	82	77.003	Carlito_syrichta
ENSGAGG00000009758	TRUB1	65	71.053	ENSCAPG00000017088	TRUB1	89	71.053	Cavia_aperea
ENSGAGG00000009758	TRUB1	56	75.897	ENSCPOG00000040236	-	92	69.196	Cavia_porcellus
ENSGAGG00000009758	TRUB1	56	74.619	ENSCPOG00000030129	-	77	74.619	Cavia_porcellus
ENSGAGG00000009758	TRUB1	81	78.169	ENSCCAG00000028842	TRUB1	83	77.320	Cebus_capucinus
ENSGAGG00000009758	TRUB1	81	77.739	ENSCATG00000033431	TRUB1	92	71.963	Cercocebus_atys
ENSGAGG00000009758	TRUB1	56	75.000	ENSCLAG00000008664	TRUB1	86	71.090	Chinchilla_lanigera
ENSGAGG00000009758	TRUB1	81	78.092	ENSCSAG00000004891	TRUB1	92	72.274	Chlorocebus_sabaeus
ENSGAGG00000009758	TRUB1	81	66.784	ENSCHOG00000011931	TRUB1	85	65.424	Choloepus_hoffmanni
ENSGAGG00000009758	TRUB1	78	95.971	ENSCPBG00000003051	TRUB1	100	95.862	Chrysemys_picta_bellii
ENSGAGG00000009758	TRUB1	81	78.092	ENSCANG00000029445	TRUB1	92	72.274	Colobus_angolensis_palliatus
ENSGAGG00000009758	TRUB1	75	68.045	ENSCGRG00001010322	-	73	68.613	Cricetulus_griseus_chok1gshd
ENSGAGG00000009758	TRUB1	65	77.632	ENSCGRG00001016772	-	80	75.417	Cricetulus_griseus_chok1gshd
ENSGAGG00000009758	TRUB1	75	76.136	ENSCGRG00000010806	Trub1	90	71.525	Cricetulus_griseus_crigri
ENSGAGG00000009758	TRUB1	73	65.234	ENSCSEG00000011261	trub1	83	65.234	Cynoglossus_semilaevis
ENSGAGG00000009758	TRUB1	70	71.311	ENSCVAG00000008791	trub1	77	70.400	Cyprinodon_variegatus
ENSGAGG00000009758	TRUB1	75	66.794	ENSDARG00000053805	trub1	93	65.428	Danio_rerio
ENSGAGG00000009758	TRUB1	81	76.678	ENSDNOG00000001069	TRUB1	83	75.601	Dasypus_novemcinctus
ENSGAGG00000009758	TRUB1	81	76.408	ENSDORG00000010431	Trub1	84	75.258	Dipodomys_ordii
ENSGAGG00000009758	TRUB1	60	73.944	ENSETEG00000009183	TRUB1	58	75.000	Echinops_telfairi
ENSGAGG00000009758	TRUB1	81	78.092	ENSEASG00005014739	TRUB1	90	72.240	Equus_asinus_asinus
ENSGAGG00000009758	TRUB1	81	78.092	ENSECAG00000007177	TRUB1	90	72.240	Equus_caballus
ENSGAGG00000009758	TRUB1	78	68.613	ENSEEUG00000013993	TRUB1	88	61.905	Erinaceus_europaeus
ENSGAGG00000009758	TRUB1	70	72.245	ENSELUG00000000502	trub1	86	72.245	Esox_lucius
ENSGAGG00000009758	TRUB1	81	78.521	ENSFCAG00000031927	TRUB1	89	73.786	Felis_catus
ENSGAGG00000009758	TRUB1	69	82.231	ENSFALG00000002232	TRUB1	93	82.231	Ficedula_albicollis
ENSGAGG00000009758	TRUB1	56	76.531	ENSFDAG00000008140	TRUB1	86	73.810	Fukomys_damarensis
ENSGAGG00000009758	TRUB1	73	67.954	ENSFHEG00000004016	trub1	89	67.954	Fundulus_heteroclitus
ENSGAGG00000009758	TRUB1	78	82.657	ENSGALG00000009091	TRUB1	98	80.935	Gallus_gallus
ENSGAGG00000009758	TRUB1	68	69.038	ENSGAFG00000009193	trub1	84	69.038	Gambusia_affinis
ENSGAGG00000009758	TRUB1	56	70.619	ENSGACG00000015387	trub1	95	70.619	Gasterosteus_aculeatus
ENSGAGG00000009758	TRUB1	81	78.169	ENSGGOG00000004583	TRUB1	83	77.586	Gorilla_gorilla
ENSGAGG00000009758	TRUB1	74	68.217	ENSHBUG00000016787	trub1	93	68.217	Haplochromis_burtoni
ENSGAGG00000009758	TRUB1	81	73.333	ENSHGLG00000015314	TRUB1	94	64.080	Heterocephalus_glaber_female
ENSGAGG00000009758	TRUB1	56	74.872	ENSHGLG00100009183	TRUB1	89	71.090	Heterocephalus_glaber_male
ENSGAGG00000009758	TRUB1	73	69.261	ENSHCOG00000017877	trub1	93	69.261	Hippocampus_comes
ENSGAGG00000009758	TRUB1	74	68.966	ENSIPUG00000017559	trub1	92	68.966	Ictalurus_punctatus
ENSGAGG00000009758	TRUB1	81	77.465	ENSSTOG00000003641	TRUB1	87	76.632	Ictidomys_tridecemlineatus
ENSGAGG00000009758	TRUB1	81	75.887	ENSJJAG00000011800	Trub1	85	74.828	Jaculus_jaculus
ENSGAGG00000009758	TRUB1	70	70.204	ENSKMAG00000006232	trub1	92	68.482	Kryptolebias_marmoratus
ENSGAGG00000009758	TRUB1	78	65.568	ENSLBEG00000026722	trub1	95	65.568	Labrus_bergylta
ENSGAGG00000009758	TRUB1	80	75.265	ENSLACG00000014885	TRUB1	95	75.265	Latimeria_chalumnae
ENSGAGG00000009758	TRUB1	78	70.609	ENSLOCG00000012979	trub1	99	69.655	Lepisosteus_oculatus
ENSGAGG00000009758	TRUB1	76	77.444	ENSLAFG00000015452	TRUB1	90	69.937	Loxodonta_africana
ENSGAGG00000009758	TRUB1	81	78.092	ENSMFAG00000031767	TRUB1	83	77.586	Macaca_fascicularis
ENSGAGG00000009758	TRUB1	81	78.092	ENSMMUG00000001902	TRUB1	83	77.586	Macaca_mulatta
ENSGAGG00000009758	TRUB1	81	73.852	ENSMNEG00000044646	TRUB1	82	73.448	Macaca_nemestrina
ENSGAGG00000009758	TRUB1	81	78.169	ENSMLEG00000042655	TRUB1	92	72.274	Mandrillus_leucophaeus
ENSGAGG00000009758	TRUB1	70	71.020	ENSMZEG00005024095	trub1	88	71.020	Maylandia_zebra
ENSGAGG00000009758	TRUB1	77	81.041	ENSMGAG00000011135	TRUB1	95	79.348	Meleagris_gallopavo
ENSGAGG00000009758	TRUB1	75	73.485	ENSMAUG00000011101	Trub1	88	68.456	Mesocricetus_auratus
ENSGAGG00000009758	TRUB1	81	78.521	ENSMICG00000016324	TRUB1	89	73.786	Microcebus_murinus
ENSGAGG00000009758	TRUB1	75	76.136	ENSMOCG00000017759	Trub1	87	72.822	Microtus_ochrogaster
ENSGAGG00000009758	TRUB1	78	83.824	ENSMODG00000009676	TRUB1	76	84.000	Monodelphis_domestica
ENSGAGG00000009758	TRUB1	76	75.655	MGP_CAROLIEiJ_G0023100	Trub1	88	70.370	Mus_caroli
ENSGAGG00000009758	TRUB1	76	74.906	ENSMUSG00000025086	Trub1	86	71.034	Mus_musculus
ENSGAGG00000009758	TRUB1	81	72.085	MGP_PahariEiJ_G0014588	Trub1	87	71.864	Mus_pahari
ENSGAGG00000009758	TRUB1	76	74.906	MGP_SPRETEiJ_G0024021	Trub1	86	71.034	Mus_spretus
ENSGAGG00000009758	TRUB1	81	78.873	ENSMPUG00000003556	TRUB1	88	74.110	Mustela_putorius_furo
ENSGAGG00000009758	TRUB1	81	77.739	ENSMLUG00000017686	TRUB1	89	74.503	Myotis_lucifugus
ENSGAGG00000009758	TRUB1	81	76.056	ENSNGAG00000018682	Trub1	89	71.845	Nannospalax_galili
ENSGAGG00000009758	TRUB1	70	71.429	ENSNBRG00000023393	trub1	90	69.444	Neolamprologus_brichardi
ENSGAGG00000009758	TRUB1	81	78.169	ENSNLEG00000016345	TRUB1	83	77.663	Nomascus_leucogenys
ENSGAGG00000009758	TRUB1	57	84.577	ENSMEUG00000006603	TRUB1	76	83.981	Notamacropus_eugenii
ENSGAGG00000009758	TRUB1	81	72.887	ENSOPRG00000009371	TRUB1	92	66.463	Ochotona_princeps
ENSGAGG00000009758	TRUB1	81	73.852	ENSODEG00000010854	TRUB1	90	69.649	Octodon_degus
ENSGAGG00000009758	TRUB1	70	71.020	ENSONIG00000007249	trub1	89	71.020	Oreochromis_niloticus
ENSGAGG00000009758	TRUB1	79	77.978	ENSOANG00000001556	TRUB1	97	75.085	Ornithorhynchus_anatinus
ENSGAGG00000009758	TRUB1	81	76.056	ENSOCUG00000009456	TRUB1	84	75.517	Oryctolagus_cuniculus
ENSGAGG00000009758	TRUB1	69	72.614	ENSORLG00000029719	trub1	87	72.314	Oryzias_latipes
ENSGAGG00000009758	TRUB1	69	72.199	ENSORLG00020016767	trub1	86	71.901	Oryzias_latipes_hni
ENSGAGG00000009758	TRUB1	69	72.199	ENSORLG00015014728	trub1	87	71.901	Oryzias_latipes_hsok
ENSGAGG00000009758	TRUB1	73	67.954	ENSOMEG00000014556	trub1	92	67.433	Oryzias_melastigma
ENSGAGG00000009758	TRUB1	81	78.169	ENSOGAG00000015895	TRUB1	88	73.463	Otolemur_garnettii
ENSGAGG00000009758	TRUB1	80	76.224	ENSOARG00000015591	TRUB1	87	73.290	Ovis_aries
ENSGAGG00000009758	TRUB1	81	78.169	ENSPPAG00000043645	TRUB1	83	77.586	Pan_paniscus
ENSGAGG00000009758	TRUB1	81	77.817	ENSPPRG00000007096	TRUB1	89	72.816	Panthera_pardus
ENSGAGG00000009758	TRUB1	81	78.169	ENSPTIG00000006378	TRUB1	89	73.139	Panthera_tigris_altaica
ENSGAGG00000009758	TRUB1	81	78.169	ENSPTRG00000002964	TRUB1	83	77.586	Pan_troglodytes
ENSGAGG00000009758	TRUB1	81	78.092	ENSPANG00000020712	TRUB1	92	72.274	Papio_anubis
ENSGAGG00000009758	TRUB1	50	70.455	ENSPKIG00000003852	trub1	76	70.455	Paramormyrops_kingsleyae
ENSGAGG00000009758	TRUB1	81	89.437	ENSPSIG00000012877	TRUB1	100	90.345	Pelodiscus_sinensis
ENSGAGG00000009758	TRUB1	75	63.636	ENSPMGG00000000075	trub1	90	65.737	Periophthalmus_magnuspinnatus
ENSGAGG00000009758	TRUB1	81	74.296	ENSPEMG00000011156	Trub1	84	74.296	Peromyscus_maniculatus_bairdii
ENSGAGG00000009758	TRUB1	78	83.088	ENSPCIG00000009729	TRUB1	87	73.438	Phascolarctos_cinereus
ENSGAGG00000009758	TRUB1	70	69.796	ENSPFOG00000009950	trub1	90	69.796	Poecilia_formosa
ENSGAGG00000009758	TRUB1	70	70.204	ENSPLAG00000013855	trub1	93	66.418	Poecilia_latipinna
ENSGAGG00000009758	TRUB1	70	69.796	ENSPMEG00000009064	trub1	88	69.796	Poecilia_mexicana
ENSGAGG00000009758	TRUB1	70	70.204	ENSPREG00000003343	trub1	88	70.204	Poecilia_reticulata
ENSGAGG00000009758	TRUB1	81	77.817	ENSPPYG00000002676	TRUB1	83	77.241	Pongo_abelii
ENSGAGG00000009758	TRUB1	81	69.123	ENSPCAG00000008427	TRUB1	88	64.952	Procavia_capensis
ENSGAGG00000009758	TRUB1	81	73.239	ENSPCOG00000024360	TRUB1	88	68.932	Propithecus_coquereli
ENSGAGG00000009758	TRUB1	60	79.717	ENSPVAG00000007575	TRUB1	86	76.889	Pteropus_vampyrus
ENSGAGG00000009758	TRUB1	70	71.020	ENSPNYG00000018614	trub1	88	71.020	Pundamilia_nyererei
ENSGAGG00000009758	TRUB1	70	62.140	ENSPNAG00000006881	trub1	81	60.800	Pygocentrus_nattereri
ENSGAGG00000009758	TRUB1	81	71.378	ENSRNOG00000017321	Trub1	90	69.055	Rattus_norvegicus
ENSGAGG00000009758	TRUB1	81	69.366	ENSRBIG00000033423	TRUB1	81	68.966	Rhinopithecus_bieti
ENSGAGG00000009758	TRUB1	81	78.169	ENSRROG00000033902	TRUB1	83	77.586	Rhinopithecus_roxellana
ENSGAGG00000009758	TRUB1	81	78.169	ENSSBOG00000024237	TRUB1	83	77.320	Saimiri_boliviensis_boliviensis
ENSGAGG00000009758	TRUB1	68	82.231	ENSSHAG00000009346	TRUB1	81	82.231	Sarcophilus_harrisii
ENSGAGG00000009758	TRUB1	71	71.705	ENSSFOG00015022124	trub1	88	71.705	Scleropages_formosus
ENSGAGG00000009758	TRUB1	70	71.020	ENSSMAG00000001020	trub1	87	71.020	Scophthalmus_maximus
ENSGAGG00000009758	TRUB1	68	70.293	ENSSDUG00000016414	trub1	88	70.204	Seriola_dumerili
ENSGAGG00000009758	TRUB1	68	70.711	ENSSLDG00000015486	trub1	88	70.612	Seriola_lalandi_dorsalis
ENSGAGG00000009758	TRUB1	80	83.929	ENSSPUG00000001642	TRUB1	97	84.397	Sphenodon_punctatus
ENSGAGG00000009758	TRUB1	70	72.245	ENSSPAG00000001217	trub1	93	69.498	Stegastes_partitus
ENSGAGG00000009758	TRUB1	81	77.465	ENSSSCG00000010653	TRUB1	90	72.313	Sus_scrofa
ENSGAGG00000009758	TRUB1	77	82.900	ENSTGUG00000010971	TRUB1	97	82.721	Taeniopygia_guttata
ENSGAGG00000009758	TRUB1	65	65.789	ENSTBEG00000002880	TRUB1	90	65.789	Tupaia_belangeri
ENSGAGG00000009758	TRUB1	61	78.140	ENSTTRG00000005767	TRUB1	93	72.131	Tursiops_truncatus
ENSGAGG00000009758	TRUB1	81	78.873	ENSUAMG00000024876	TRUB1	88	74.110	Ursus_americanus
ENSGAGG00000009758	TRUB1	80	78.853	ENSUMAG00000002411	TRUB1	88	75.593	Ursus_maritimus
ENSGAGG00000009758	TRUB1	82	78.671	ENSVPAG00000005507	TRUB1	90	74.204	Vicugna_pacos
ENSGAGG00000009758	TRUB1	80	78.292	ENSVVUG00000010085	TRUB1	70	76.976	Vulpes_vulpes
ENSGAGG00000009758	TRUB1	76	69.549	ENSXETG00000023828	trub1	100	68.478	Xenopus_tropicalis
ENSGAGG00000009758	TRUB1	68	70.168	ENSXCOG00000017847	trub1	84	70.168	Xiphophorus_couchianus
ENSGAGG00000009758	TRUB1	70	68.980	ENSXMAG00000014701	trub1	88	68.980	Xiphophorus_maculatus