EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAGG00000009953 (Gene tree)
Gene ID: -
Gene Symbol: SLIRP
Alias: C14orf156|DC50
Full Name: SRA stem-loop interacting RNA binding protein
Gene Type: protein_coding
Species: Gopherus_agassizii
Status: putative
Strand: Minus strand
Length: 5242 bases
Position: chrPPEB01006079.1:29234-34475
Accession: 20495
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAGP00000012968	RRM_1	PF00076.22	3e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAGT00000014862	SLIRP-201	909	-	ENSGAGP00000012968	145 (aa)	-	-

Gene Model

Click here to download ENSGAGG00000009953's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAGG00000009953's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAGG00000009953	SLIRP	59	33.333	ENSGAGG00000007175	HNRNPAB	56	33.333

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAGG00000009953	SLIRP	60	61.364	ENSG00000119705	SLIRP	92	70.000	Homo_sapiens
ENSGAGG00000009953	SLIRP	68	61.616	ENSAPOG00000001298	slirp	98	61.616	Acanthochromis_polyacanthus
ENSGAGG00000009953	SLIRP	57	59.036	ENSAMEG00000003975	SLIRP	90	59.036	Ailuropoda_melanoleuca
ENSGAGG00000009953	SLIRP	64	59.140	ENSACIG00000023083	slirp	91	59.140	Amphilophus_citrinellus
ENSGAGG00000009953	SLIRP	68	61.616	ENSAOCG00000006342	slirp	99	61.616	Amphiprion_ocellaris
ENSGAGG00000009953	SLIRP	68	61.616	ENSAPEG00000015917	slirp	99	61.616	Amphiprion_percula
ENSGAGG00000009953	SLIRP	65	61.702	ENSAPEG00000015719	-	95	61.702	Amphiprion_percula
ENSGAGG00000009953	SLIRP	59	64.706	ENSATEG00000013525	slirp	85	64.706	Anabas_testudineus
ENSGAGG00000009953	SLIRP	57	61.446	ENSAMXG00000018693	slirp	83	61.446	Astyanax_mexicanus
ENSGAGG00000009953	SLIRP	62	58.889	ENSCJAG00000016946	SLIRP	91	56.044	Callithrix_jacchus
ENSGAGG00000009953	SLIRP	62	55.556	ENSCAFG00020015876	-	81	55.556	Canis_lupus_dingo
ENSGAGG00000009953	SLIRP	65	52.128	ENSCCAG00000030130	SLIRP	85	52.128	Cebus_capucinus
ENSGAGG00000009953	SLIRP	52	64.474	ENSCATG00000036327	SLIRP	79	59.740	Cercocebus_atys
ENSGAGG00000009953	SLIRP	62	56.667	ENSCSAG00000011736	SLIRP	81	56.667	Chlorocebus_sabaeus
ENSGAGG00000009953	SLIRP	64	75.269	ENSCPBG00000026327	SLIRP	94	75.269	Chrysemys_picta_bellii
ENSGAGG00000009953	SLIRP	53	59.740	ENSCANG00000032892	SLIRP	79	59.740	Colobus_angolensis_palliatus
ENSGAGG00000009953	SLIRP	61	56.180	ENSCGRG00001024068	Slirp	80	56.180	Cricetulus_griseus_chok1gshd
ENSGAGG00000009953	SLIRP	61	56.180	ENSCGRG00000017440	Slirp	80	56.180	Cricetulus_griseus_crigri
ENSGAGG00000009953	SLIRP	64	52.688	ENSCSEG00000015766	slirp	95	52.688	Cynoglossus_semilaevis
ENSGAGG00000009953	SLIRP	56	67.901	ENSCVAG00000012504	slirp	80	67.901	Cyprinodon_variegatus
ENSGAGG00000009953	SLIRP	65	57.447	ENSDARG00000097753	slirp	96	57.000	Danio_rerio
ENSGAGG00000009953	SLIRP	59	57.647	ENSDNOG00000007721	SLIRP	95	51.923	Dasypus_novemcinctus
ENSGAGG00000009953	SLIRP	73	48.113	ENSDORG00000012379	Slirp	95	48.113	Dipodomys_ordii
ENSGAGG00000009953	SLIRP	59	54.118	ENSETEG00000010345	SLIRP	94	50.962	Echinops_telfairi
ENSGAGG00000009953	SLIRP	62	54.444	ENSEASG00005020193	SLIRP	81	54.444	Equus_asinus_asinus
ENSGAGG00000009953	SLIRP	71	49.515	ENSEEUG00000007257	SLIRP	97	49.515	Erinaceus_europaeus
ENSGAGG00000009953	SLIRP	65	56.383	ENSELUG00000016800	slirp	92	56.383	Esox_lucius
ENSGAGG00000009953	SLIRP	56	59.259	ENSFCAG00000036326	SLIRP	81	59.259	Felis_catus
ENSGAGG00000009953	SLIRP	54	56.410	ENSFALG00000012583	SLIRP	97	52.830	Ficedula_albicollis
ENSGAGG00000009953	SLIRP	59	51.765	ENSFDAG00000008347	SLIRP	75	51.765	Fukomys_damarensis
ENSGAGG00000009953	SLIRP	52	61.842	ENSFHEG00000004709	slirp	82	61.842	Fundulus_heteroclitus
ENSGAGG00000009953	SLIRP	71	57.282	ENSGMOG00000016948	slirp	96	57.282	Gadus_morhua
ENSGAGG00000009953	SLIRP	69	55.000	ENSGALG00000031238	SLIRP	100	55.000	Gallus_gallus
ENSGAGG00000009953	SLIRP	65	58.511	ENSGAFG00000010998	slirp	93	58.511	Gambusia_affinis
ENSGAGG00000009953	SLIRP	53	63.636	ENSGACG00000020137	slirp	90	63.636	Gasterosteus_aculeatus
ENSGAGG00000009953	SLIRP	60	61.364	ENSGGOG00000011059	-	79	66.234	Gorilla_gorilla
ENSGAGG00000009953	SLIRP	67	50.515	ENSHGLG00000018491	SLIRP	86	50.515	Heterocephalus_glaber_female
ENSGAGG00000009953	SLIRP	67	50.515	ENSHGLG00100014153	SLIRP	86	50.515	Heterocephalus_glaber_male
ENSGAGG00000009953	SLIRP	66	65.979	ENSHCOG00000006795	slirp	98	65.979	Hippocampus_comes
ENSGAGG00000009953	SLIRP	69	58.000	ENSIPUG00000010214	SLIRP	98	58.000	Ictalurus_punctatus
ENSGAGG00000009953	SLIRP	62	50.000	ENSSTOG00000034316	SLIRP	81	50.000	Ictidomys_tridecemlineatus
ENSGAGG00000009953	SLIRP	68	57.143	ENSKMAG00000002038	slirp	94	57.143	Kryptolebias_marmoratus
ENSGAGG00000009953	SLIRP	65	61.702	ENSLBEG00000007564	slirp	93	61.702	Labrus_bergylta
ENSGAGG00000009953	SLIRP	69	59.406	ENSLACG00000013434	SLIRP	95	59.406	Latimeria_chalumnae
ENSGAGG00000009953	SLIRP	52	63.158	ENSMFAG00000042960	SLIRP	91	56.044	Macaca_fascicularis
ENSGAGG00000009953	SLIRP	52	61.842	ENSMMUG00000029256	SLIRP	79	59.740	Macaca_mulatta
ENSGAGG00000009953	SLIRP	52	63.158	ENSMNEG00000028921	SLIRP	91	56.044	Macaca_nemestrina
ENSGAGG00000009953	SLIRP	53	59.740	ENSMLEG00000043644	SLIRP	79	59.740	Mandrillus_leucophaeus
ENSGAGG00000009953	SLIRP	65	60.638	ENSMZEG00005004617	slirp	94	60.638	Maylandia_zebra
ENSGAGG00000009953	SLIRP	61	55.056	ENSMAUG00000003857	Slirp	80	55.056	Mesocricetus_auratus
ENSGAGG00000009953	SLIRP	62	55.556	ENSMICG00000012080	SLIRP	80	55.556	Microcebus_murinus
ENSGAGG00000009953	SLIRP	60	54.023	ENSMOCG00000016019	Slirp	78	54.023	Microtus_ochrogaster
ENSGAGG00000009953	SLIRP	61	65.169	ENSMMOG00000018268	slirp	88	65.169	Mola_mola
ENSGAGG00000009953	SLIRP	57	63.415	ENSMALG00000012581	slirp	84	63.415	Monopterus_albus
ENSGAGG00000009953	SLIRP	73	52.336	MGP_CAROLIEiJ_G0017995	Slirp	98	52.336	Mus_caroli
ENSGAGG00000009953	SLIRP	73	52.336	ENSMUSG00000021040	Slirp	90	57.778	Mus_musculus
ENSGAGG00000009953	SLIRP	73	53.271	MGP_SPRETEiJ_G0018840	Slirp	95	53.271	Mus_spretus
ENSGAGG00000009953	SLIRP	68	50.505	ENSMLUG00000029544	-	92	49.038	Myotis_lucifugus
ENSGAGG00000009953	SLIRP	61	51.685	ENSMLUG00000024998	-	96	50.000	Myotis_lucifugus
ENSGAGG00000009953	SLIRP	60	57.471	ENSNGAG00000016363	Slirp	84	57.471	Nannospalax_galili
ENSGAGG00000009953	SLIRP	63	57.143	ENSNLEG00000032459	-	82	57.143	Nomascus_leucogenys
ENSGAGG00000009953	SLIRP	72	53.846	ENSNLEG00000027238	-	93	59.036	Nomascus_leucogenys
ENSGAGG00000009953	SLIRP	60	54.023	ENSODEG00000012580	SLIRP	76	62.857	Octodon_degus
ENSGAGG00000009953	SLIRP	65	61.702	ENSONIG00000011692	slirp	94	61.702	Oreochromis_niloticus
ENSGAGG00000009953	SLIRP	62	58.889	ENSOANG00000022366	SLIRP	78	58.889	Ornithorhynchus_anatinus
ENSGAGG00000009953	SLIRP	65	63.830	ENSORLG00000010761	slirp	72	63.830	Oryzias_latipes
ENSGAGG00000009953	SLIRP	62	66.667	ENSORLG00020022188	slirp	89	66.667	Oryzias_latipes_hni
ENSGAGG00000009953	SLIRP	68	60.606	ENSORLG00015020171	slirp	95	60.606	Oryzias_latipes_hsok
ENSGAGG00000009953	SLIRP	64	66.667	ENSOMEG00000019321	slirp	92	66.667	Oryzias_melastigma
ENSGAGG00000009953	SLIRP	62	60.000	ENSPPAG00000040710	-	72	71.642	Pan_paniscus
ENSGAGG00000009953	SLIRP	56	59.259	ENSPPRG00000014350	SLIRP	81	59.259	Panthera_pardus
ENSGAGG00000009953	SLIRP	56	59.259	ENSPTIG00000014196	SLIRP	81	59.259	Panthera_tigris_altaica
ENSGAGG00000009953	SLIRP	60	61.364	ENSPTRG00000030691	SLIRP	72	71.642	Pan_troglodytes
ENSGAGG00000009953	SLIRP	52	64.474	ENSPANG00000026323	SLIRP	79	61.039	Papio_anubis
ENSGAGG00000009953	SLIRP	53	70.130	ENSPMGG00000010541	slirp	89	70.130	Periophthalmus_magnuspinnatus
ENSGAGG00000009953	SLIRP	60	52.874	ENSPEMG00000013234	Slirp	76	52.874	Peromyscus_maniculatus_bairdii
ENSGAGG00000009953	SLIRP	59	51.765	ENSPMAG00000009355	slirp	92	51.765	Petromyzon_marinus
ENSGAGG00000009953	SLIRP	59	53.488	ENSPCIG00000026842	-	92	53.488	Phascolarctos_cinereus
ENSGAGG00000009953	SLIRP	65	59.574	ENSPFOG00000006758	slirp	93	59.574	Poecilia_formosa
ENSGAGG00000009953	SLIRP	65	59.574	ENSPLAG00000011140	slirp	93	59.574	Poecilia_latipinna
ENSGAGG00000009953	SLIRP	65	59.574	ENSPMEG00000019535	slirp	93	59.574	Poecilia_mexicana
ENSGAGG00000009953	SLIRP	65	59.574	ENSPREG00000011673	slirp	93	59.574	Poecilia_reticulata
ENSGAGG00000009953	SLIRP	55	63.750	ENSPPYG00000006030	SLIRP	81	58.889	Pongo_abelii
ENSGAGG00000009953	SLIRP	72	48.649	ENSPCOG00000015159	SLIRP	100	48.649	Propithecus_coquereli
ENSGAGG00000009953	SLIRP	58	68.235	ENSPNAG00000008633	slirp	86	68.235	Pygocentrus_nattereri
ENSGAGG00000009953	SLIRP	62	55.556	ENSRBIG00000032222	-	79	61.039	Rhinopithecus_bieti
ENSGAGG00000009953	SLIRP	55	53.750	ENSRBIG00000035817	-	74	53.750	Rhinopithecus_bieti
ENSGAGG00000009953	SLIRP	62	55.556	ENSRROG00000036656	-	79	61.039	Rhinopithecus_roxellana
ENSGAGG00000009953	SLIRP	56	61.728	ENSSBOG00000020014	SLIRP	85	61.728	Saimiri_boliviensis_boliviensis
ENSGAGG00000009953	SLIRP	63	60.000	ENSSFOG00015011165	slirp	84	65.060	Scleropages_formosus
ENSGAGG00000009953	SLIRP	55	50.000	ENSSMAG00000012930	slirp	78	50.000	Scophthalmus_maximus
ENSGAGG00000009953	SLIRP	74	57.658	ENSSDUG00000021883	slirp	72	57.658	Seriola_dumerili
ENSGAGG00000009953	SLIRP	65	62.766	ENSSLDG00000023136	slirp	85	62.766	Seriola_lalandi_dorsalis
ENSGAGG00000009953	SLIRP	66	62.500	ENSSPUG00000009346	SLIRP	98	62.500	Sphenodon_punctatus
ENSGAGG00000009953	SLIRP	68	58.163	ENSSPAG00000013477	slirp	98	58.163	Stegastes_partitus
ENSGAGG00000009953	SLIRP	61	53.933	ENSSSCG00000028167	SLIRP	80	53.933	Sus_scrofa
ENSGAGG00000009953	SLIRP	54	57.692	ENSTGUG00000012337	SLIRP	97	52.830	Taeniopygia_guttata
ENSGAGG00000009953	SLIRP	68	56.566	ENSTRUG00000020127	slirp	97	56.566	Takifugu_rubripes
ENSGAGG00000009953	SLIRP	75	50.459	ENSUAMG00000022445	SLIRP	98	50.459	Ursus_americanus
ENSGAGG00000009953	SLIRP	74	51.852	ENSUMAG00000007166	SLIRP	97	51.852	Ursus_maritimus
ENSGAGG00000009953	SLIRP	55	55.000	ENSVPAG00000001781	SLIRP	74	55.000	Vicugna_pacos
ENSGAGG00000009953	SLIRP	62	54.444	ENSVVUG00000004436	SLIRP	81	54.444	Vulpes_vulpes
ENSGAGG00000009953	SLIRP	58	59.524	ENSXETG00000030343	SLIRP	94	59.524	Xenopus_tropicalis
ENSGAGG00000009953	SLIRP	68	56.566	ENSXCOG00000009422	slirp	98	56.566	Xiphophorus_couchianus
ENSGAGG00000009953	SLIRP	68	58.586	ENSXMAG00000015655	slirp	98	58.586	Xiphophorus_maculatus