EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAGG00000011163 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Gopherus_agassizii
Status: putative
Strand: Plus strand
Length: 174 bases
Position: chrPPEB01000090.1:259604-259777
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAGP00000014719	LSM	PF01423.22	3.1e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAGT00000016827	-	174	-	ENSGAGP00000014719	57 (aa)	-	-

Gene Model

Click here to download ENSGAGG00000011163's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAGG00000011163's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAGG00000011163	-	100	89.655	ENSGAGG00000012945	-	53	89.655
ENSGAGG00000011163	-	100	91.228	ENSGAGG00000022991	-	67	91.228
ENSGAGG00000011163	-	75	86.047	ENSGAGG00000014132	-	52	86.047
ENSGAGG00000011163	-	81	50.000	ENSGAGG00000020980	LSM6	58	50.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAGG00000011163	-	100	91.667	ENSG00000139343	SNRPF	70	91.667	Homo_sapiens
ENSGAGG00000011163	-	100	91.667	ENSAMEG00000002166	-	71	91.667	Ailuropoda_melanoleuca
ENSGAGG00000011163	-	88	86.000	ENSAMEG00000018718	-	70	85.000	Ailuropoda_melanoleuca
ENSGAGG00000011163	-	86	91.837	ENSACIG00000013216	snrpf	71	88.333	Amphilophus_citrinellus
ENSGAGG00000011163	-	86	91.837	ENSAOCG00000015108	snrpf	71	88.333	Amphiprion_ocellaris
ENSGAGG00000011163	-	86	91.837	ENSAPEG00000022022	snrpf	71	88.333	Amphiprion_percula
ENSGAGG00000011163	-	86	91.837	ENSATEG00000022625	snrpf	65	88.333	Anabas_testudineus
ENSGAGG00000011163	-	86	93.878	ENSACAG00000014073	SNRPF	69	90.000	Anolis_carolinensis
ENSGAGG00000011163	-	86	89.796	ENSANAG00000020297	-	55	86.667	Aotus_nancymaae
ENSGAGG00000011163	-	100	91.667	ENSANAG00000032845	SNRPF	70	91.667	Aotus_nancymaae
ENSGAGG00000011163	-	86	57.143	ENSANAG00000025860	-	64	58.333	Aotus_nancymaae
ENSGAGG00000011163	-	86	91.837	ENSACLG00000016066	snrpf	71	88.333	Astatotilapia_calliptera
ENSGAGG00000011163	-	86	87.755	ENSAMXG00000007421	snrpf	69	85.000	Astyanax_mexicanus
ENSGAGG00000011163	-	100	91.667	ENSBTAG00000016271	SNRPF	70	91.667	Bos_taurus
ENSGAGG00000011163	-	91	88.462	ENSBTAG00000050012	-	64	88.462	Bos_taurus
ENSGAGG00000011163	-	95	66.667	WBGene00004918	snr-5	64	66.667	Caenorhabditis_elegans
ENSGAGG00000011163	-	100	91.667	ENSCJAG00000002705	-	70	91.667	Callithrix_jacchus
ENSGAGG00000011163	-	100	91.667	ENSCAFG00000006395	-	54	91.667	Canis_familiaris
ENSGAGG00000011163	-	82	91.489	ENSCAFG00000031151	-	70	86.667	Canis_familiaris
ENSGAGG00000011163	-	82	91.489	ENSCAFG00020010823	-	70	86.667	Canis_lupus_dingo
ENSGAGG00000011163	-	96	85.455	ENSCAFG00020013161	-	59	85.455	Canis_lupus_dingo
ENSGAGG00000011163	-	86	86.000	ENSTSYG00000036502	-	69	83.607	Carlito_syrichta
ENSGAGG00000011163	-	86	81.633	ENSTSYG00000030635	-	69	80.000	Carlito_syrichta
ENSGAGG00000011163	-	100	91.667	ENSCAPG00000007242	SNRPF	71	91.667	Cavia_aperea
ENSGAGG00000011163	-	100	91.667	ENSCPOG00000013898	SNRPF	70	91.667	Cavia_porcellus
ENSGAGG00000011163	-	100	91.667	ENSCCAG00000017356	-	70	91.667	Cebus_capucinus
ENSGAGG00000011163	-	100	91.667	ENSCCAG00000037378	-	70	91.667	Cebus_capucinus
ENSGAGG00000011163	-	100	91.667	ENSCLAG00000007200	SNRPF	70	91.667	Chinchilla_lanigera
ENSGAGG00000011163	-	67	97.368	ENSCHOG00000009392	SNRPF	59	97.368	Choloepus_hoffmanni
ENSGAGG00000011163	-	100	80.000	ENSCPBG00000026463	-	70	80.000	Chrysemys_picta_bellii
ENSGAGG00000011163	-	100	86.207	ENSCPBG00000001985	-	69	86.207	Chrysemys_picta_bellii
ENSGAGG00000011163	-	86	89.796	ENSCPBG00000006227	-	70	85.000	Chrysemys_picta_bellii
ENSGAGG00000011163	-	95	87.037	ENSCSAVG00000007498	-	61	87.037	Ciona_savignyi
ENSGAGG00000011163	-	100	91.667	ENSCGRG00001017100	-	70	91.667	Cricetulus_griseus_chok1gshd
ENSGAGG00000011163	-	95	83.333	ENSCGRG00000018878	-	67	83.333	Cricetulus_griseus_crigri
ENSGAGG00000011163	-	100	91.667	ENSCGRG00000000336	-	70	91.667	Cricetulus_griseus_crigri
ENSGAGG00000011163	-	86	89.796	ENSCSEG00000004748	snrpf	70	86.667	Cynoglossus_semilaevis
ENSGAGG00000011163	-	86	88.235	ENSDARG00000105037	snrpf	70	85.484	Danio_rerio
ENSGAGG00000011163	-	100	91.667	ENSDNOG00000048989	-	54	91.667	Dasypus_novemcinctus
ENSGAGG00000011163	-	86	81.633	ENSDNOG00000049373	-	52	76.667	Dasypus_novemcinctus
ENSGAGG00000011163	-	86	93.878	ENSDORG00000029740	-	73	90.000	Dipodomys_ordii
ENSGAGG00000011163	-	81	84.783	ENSDORG00000025351	-	64	84.783	Dipodomys_ordii
ENSGAGG00000011163	-	98	72.881	FBgn0000426	SmF	67	72.881	Drosophila_melanogaster
ENSGAGG00000011163	-	100	91.667	ENSETEG00000001558	-	70	91.667	Echinops_telfairi
ENSGAGG00000011163	-	98	68.421	ENSEBUG00000001793	-	61	68.421	Eptatretus_burgeri
ENSGAGG00000011163	-	100	91.667	ENSEEUG00000013509	SNRPF	71	91.667	Erinaceus_europaeus
ENSGAGG00000011163	-	86	87.755	ENSELUG00000003121	RUXF	70	85.000	Esox_lucius
ENSGAGG00000011163	-	100	80.000	ENSELUG00000007737	RUXF	69	80.000	Esox_lucius
ENSGAGG00000011163	-	96	74.138	ENSFCAG00000031148	-	53	74.138	Felis_catus
ENSGAGG00000011163	-	81	73.913	ENSFCAG00000021942	-	65	73.684	Felis_catus
ENSGAGG00000011163	-	100	91.667	ENSFCAG00000029966	-	70	91.667	Felis_catus
ENSGAGG00000011163	-	100	91.667	ENSFALG00000010799	SNRPF	70	91.667	Ficedula_albicollis
ENSGAGG00000011163	-	100	91.667	ENSFDAG00000002831	-	70	91.667	Fukomys_damarensis
ENSGAGG00000011163	-	86	91.837	ENSFHEG00000003240	snrpf	53	88.333	Fundulus_heteroclitus
ENSGAGG00000011163	-	86	91.837	ENSGMOG00000007741	snrpf	71	88.333	Gadus_morhua
ENSGAGG00000011163	-	100	91.667	ENSGALG00000011409	SNRPF	70	91.667	Gallus_gallus
ENSGAGG00000011163	-	86	91.837	ENSGAFG00000016187	snrpf	69	88.333	Gambusia_affinis
ENSGAGG00000011163	-	86	89.796	ENSGACG00000020055	snrpf	71	86.667	Gasterosteus_aculeatus
ENSGAGG00000011163	-	89	88.889	ENSGGOG00000039936	-	69	88.889	Gorilla_gorilla
ENSGAGG00000011163	-	88	80.000	ENSGGOG00000039564	-	67	80.000	Gorilla_gorilla
ENSGAGG00000011163	-	100	91.667	ENSGGOG00000001127	-	71	91.667	Gorilla_gorilla
ENSGAGG00000011163	-	100	91.667	ENSHGLG00000009108	SNRPF	70	91.667	Heterocephalus_glaber_female
ENSGAGG00000011163	-	86	93.878	ENSHGLG00000021172	-	70	90.000	Heterocephalus_glaber_female
ENSGAGG00000011163	-	86	93.878	ENSHGLG00100019596	-	70	90.000	Heterocephalus_glaber_male
ENSGAGG00000011163	-	100	91.667	ENSHGLG00100008103	-	71	91.667	Heterocephalus_glaber_male
ENSGAGG00000011163	-	86	91.837	ENSIPUG00000018994	snrpf	71	88.333	Ictalurus_punctatus
ENSGAGG00000011163	-	100	91.667	ENSSTOG00000010434	-	70	91.667	Ictidomys_tridecemlineatus
ENSGAGG00000011163	-	100	91.667	ENSJJAG00000011272	-	70	91.667	Jaculus_jaculus
ENSGAGG00000011163	-	100	82.759	ENSJJAG00000010502	-	69	82.759	Jaculus_jaculus
ENSGAGG00000011163	-	100	91.379	ENSJJAG00000004828	-	89	91.379	Jaculus_jaculus
ENSGAGG00000011163	-	100	79.310	ENSJJAG00000004558	-	69	79.310	Jaculus_jaculus
ENSGAGG00000011163	-	86	91.837	ENSKMAG00000013566	snrpf	70	88.333	Kryptolebias_marmoratus
ENSGAGG00000011163	-	86	89.796	ENSLBEG00000008800	snrpf	70	86.667	Labrus_bergylta
ENSGAGG00000011163	-	100	91.667	ENSLACG00000002456	-	51	91.667	Latimeria_chalumnae
ENSGAGG00000011163	-	86	89.796	ENSLOCG00000015744	snrpf	70	86.667	Lepisosteus_oculatus
ENSGAGG00000011163	-	100	91.667	ENSLAFG00000017426	SNRPF	70	91.667	Loxodonta_africana
ENSGAGG00000011163	-	86	89.796	ENSMAMG00000016593	snrpf	71	86.667	Mastacembelus_armatus
ENSGAGG00000011163	-	86	91.837	ENSMZEG00005014701	snrpf	71	88.333	Maylandia_zebra
ENSGAGG00000011163	-	100	91.667	ENSMGAG00000011453	-	54	91.667	Meleagris_gallopavo
ENSGAGG00000011163	-	100	91.667	ENSMAUG00000019737	-	81	91.667	Mesocricetus_auratus
ENSGAGG00000011163	-	100	94.737	ENSMAUG00000010289	-	75	94.737	Mesocricetus_auratus
ENSGAGG00000011163	-	100	91.667	ENSMAUG00000016909	-	81	91.667	Mesocricetus_auratus
ENSGAGG00000011163	-	86	87.755	ENSMAUG00000008799	-	70	85.000	Mesocricetus_auratus
ENSGAGG00000011163	-	100	91.667	ENSMICG00000012153	-	70	91.667	Microcebus_murinus
ENSGAGG00000011163	-	86	81.633	ENSMOCG00000022166	-	61	80.357	Microtus_ochrogaster
ENSGAGG00000011163	-	86	77.551	ENSMOCG00000020220	-	75	77.966	Microtus_ochrogaster
ENSGAGG00000011163	-	100	91.667	ENSMOCG00000020437	Snrpf	70	91.667	Microtus_ochrogaster
ENSGAGG00000011163	-	86	89.796	ENSMMOG00000007127	snrpf	70	86.667	Mola_mola
ENSGAGG00000011163	-	100	91.667	ENSMODG00000008091	SNRPF	53	91.667	Monodelphis_domestica
ENSGAGG00000011163	-	86	91.837	ENSMALG00000012328	snrpf	71	88.333	Monopterus_albus
ENSGAGG00000011163	-	100	91.667	MGP_CAROLIEiJ_G0015735	-	70	91.667	Mus_caroli
ENSGAGG00000011163	-	100	91.667	ENSMUSG00000020018	Snrpf	70	91.667	Mus_musculus
ENSGAGG00000011163	-	100	91.667	MGP_PahariEiJ_G0031350	Snrpf	70	91.667	Mus_pahari
ENSGAGG00000011163	-	100	91.667	MGP_SPRETEiJ_G0016553	Snrpf	70	91.667	Mus_spretus
ENSGAGG00000011163	-	100	91.667	ENSMPUG00000007176	-	54	91.667	Mustela_putorius_furo
ENSGAGG00000011163	-	100	91.667	ENSMLUG00000026149	-	57	91.667	Myotis_lucifugus
ENSGAGG00000011163	-	98	74.576	ENSMLUG00000026269	-	56	74.576	Myotis_lucifugus
ENSGAGG00000011163	-	100	91.667	ENSMLUG00000029201	-	57	91.667	Myotis_lucifugus
ENSGAGG00000011163	-	100	91.667	ENSMLUG00000027932	-	57	91.667	Myotis_lucifugus
ENSGAGG00000011163	-	100	91.667	ENSMLUG00000013577	-	71	91.667	Myotis_lucifugus
ENSGAGG00000011163	-	100	91.667	ENSNGAG00000024292	-	70	91.667	Nannospalax_galili
ENSGAGG00000011163	-	100	78.947	ENSNGAG00000005851	-	67	78.947	Nannospalax_galili
ENSGAGG00000011163	-	86	91.837	ENSNBRG00000011682	snrpf	61	88.333	Neolamprologus_brichardi
ENSGAGG00000011163	-	86	51.020	ENSMEUG00000000671	SNRPF	71	55.000	Notamacropus_eugenii
ENSGAGG00000011163	-	100	91.667	ENSODEG00000010328	-	71	91.667	Octodon_degus
ENSGAGG00000011163	-	100	91.667	ENSOCUG00000010925	SNRPF	53	91.667	Oryctolagus_cuniculus
ENSGAGG00000011163	-	86	87.755	ENSORLG00020008216	snrpf	70	85.000	Oryzias_latipes_hni
ENSGAGG00000011163	-	86	87.755	ENSORLG00015007418	snrpf	70	85.000	Oryzias_latipes_hsok
ENSGAGG00000011163	-	86	89.796	ENSOMEG00000003018	snrpf	71	86.667	Oryzias_melastigma
ENSGAGG00000011163	-	86	93.878	ENSOGAG00000030323	-	70	88.333	Otolemur_garnettii
ENSGAGG00000011163	-	100	91.667	ENSOARG00000011853	-	52	91.667	Ovis_aries
ENSGAGG00000011163	-	82	80.851	ENSPPAG00000037479	-	62	80.851	Pan_paniscus
ENSGAGG00000011163	-	89	90.741	ENSPPAG00000037544	-	69	90.741	Pan_paniscus
ENSGAGG00000011163	-	100	91.667	ENSPPRG00000005875	-	70	91.667	Panthera_pardus
ENSGAGG00000011163	-	96	72.414	ENSPPRG00000007449	-	59	72.414	Panthera_pardus
ENSGAGG00000011163	-	100	91.667	ENSPTIG00000007520	SNRPF	70	91.667	Panthera_tigris_altaica
ENSGAGG00000011163	-	96	74.138	ENSPTIG00000005117	-	69	74.138	Panthera_tigris_altaica
ENSGAGG00000011163	-	89	90.741	ENSPTRG00000043814	-	69	90.741	Pan_troglodytes
ENSGAGG00000011163	-	82	78.723	ENSPTRG00000047717	-	62	78.723	Pan_troglodytes
ENSGAGG00000011163	-	86	91.837	ENSPKIG00000014784	snrpf	66	88.333	Paramormyrops_kingsleyae
ENSGAGG00000011163	-	100	91.667	ENSPSIG00000016462	SNRPF	70	91.667	Pelodiscus_sinensis
ENSGAGG00000011163	-	86	89.796	ENSPMGG00000023548	snrpf	70	86.667	Periophthalmus_magnuspinnatus
ENSGAGG00000011163	-	100	91.667	ENSPEMG00000023326	Snrpf	70	91.667	Peromyscus_maniculatus_bairdii
ENSGAGG00000011163	-	86	91.837	ENSPLAG00000023932	snrpf	71	88.333	Poecilia_latipinna
ENSGAGG00000011163	-	86	91.837	ENSPMEG00000003377	snrpf	71	88.333	Poecilia_mexicana
ENSGAGG00000011163	-	86	91.837	ENSPREG00000022635	snrpf	69	88.333	Poecilia_reticulata
ENSGAGG00000011163	-	100	91.667	ENSPPYG00000004847	-	70	91.667	Pongo_abelii
ENSGAGG00000011163	-	100	91.667	ENSPCOG00000023833	-	70	91.667	Propithecus_coquereli
ENSGAGG00000011163	-	100	91.667	ENSPVAG00000009036	SNRPF	70	91.667	Pteropus_vampyrus
ENSGAGG00000011163	-	86	91.837	ENSPNYG00000021712	snrpf	71	88.333	Pundamilia_nyererei
ENSGAGG00000011163	-	86	89.796	ENSPNAG00000019117	snrpf	71	86.667	Pygocentrus_nattereri
ENSGAGG00000011163	-	100	91.667	ENSRNOG00000005556	Snrpf	70	91.667	Rattus_norvegicus
ENSGAGG00000011163	-	86	91.837	ENSRBIG00000030414	-	70	86.667	Rhinopithecus_bieti
ENSGAGG00000011163	-	86	91.837	ENSRROG00000021975	-	70	86.667	Rhinopithecus_roxellana
ENSGAGG00000011163	-	81	58.696	YPR182W	SMX3	53	58.696	Saccharomyces_cerevisiae
ENSGAGG00000011163	-	86	75.510	ENSSBOG00000027638	-	69	75.000	Saimiri_boliviensis_boliviensis
ENSGAGG00000011163	-	100	91.667	ENSSBOG00000036179	-	70	91.667	Saimiri_boliviensis_boliviensis
ENSGAGG00000011163	-	100	91.667	ENSSBOG00000012868	-	70	91.667	Saimiri_boliviensis_boliviensis
ENSGAGG00000011163	-	86	77.551	ENSSBOG00000032297	-	67	76.667	Saimiri_boliviensis_boliviensis
ENSGAGG00000011163	-	100	91.667	ENSSHAG00000012294	SNRPF	54	91.667	Sarcophilus_harrisii
ENSGAGG00000011163	-	68	92.308	ENSSFOG00015021523	snrpf	58	92.308	Scleropages_formosus
ENSGAGG00000011163	-	86	89.796	ENSSMAG00000005533	snrpf	69	86.667	Scophthalmus_maximus
ENSGAGG00000011163	-	95	76.364	ENSSLDG00000003885	-	67	76.364	Seriola_lalandi_dorsalis
ENSGAGG00000011163	-	86	91.837	ENSSLDG00000005119	snrpf	70	88.333	Seriola_lalandi_dorsalis
ENSGAGG00000011163	-	100	91.667	ENSSPUG00000014590	-	71	91.667	Sphenodon_punctatus
ENSGAGG00000011163	-	86	91.837	ENSSPAG00000003283	snrpf	68	88.333	Stegastes_partitus
ENSGAGG00000011163	-	100	91.667	ENSSSCG00000000895	SNRPF	70	91.667	Sus_scrofa
ENSGAGG00000011163	-	86	89.796	ENSTRUG00000014956	snrpf	87	86.667	Takifugu_rubripes
ENSGAGG00000011163	-	86	89.796	ENSTNIG00000012672	snrpf	70	86.667	Tetraodon_nigroviridis
ENSGAGG00000011163	-	86	51.020	ENSTTRG00000006070	SNRPF	70	55.000	Tursiops_truncatus
ENSGAGG00000011163	-	100	83.051	ENSUAMG00000001101	-	69	83.051	Ursus_americanus
ENSGAGG00000011163	-	100	91.667	ENSUAMG00000008176	-	70	91.667	Ursus_americanus
ENSGAGG00000011163	-	100	91.667	ENSUMAG00000003528	-	70	91.667	Ursus_maritimus
ENSGAGG00000011163	-	86	87.755	ENSUMAG00000006177	-	69	81.356	Ursus_maritimus
ENSGAGG00000011163	-	100	91.667	ENSVPAG00000008712	-	70	91.667	Vicugna_pacos
ENSGAGG00000011163	-	91	84.615	ENSVVUG00000023821	-	67	84.615	Vulpes_vulpes
ENSGAGG00000011163	-	86	58.824	ENSXETG00000021630	snrpf	71	61.290	Xenopus_tropicalis
ENSGAGG00000011163	-	86	91.837	ENSXCOG00000013860	snrpf	69	88.333	Xiphophorus_couchianus
ENSGAGG00000011163	-	86	91.837	ENSXMAG00000015448	snrpf	71	88.333	Xiphophorus_maculatus