EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAGG00000011837 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Gopherus_agassizii
Status: putative
Strand: Plus strand
Length: 22924 bases
Position: chrPPEB01001327.1:15745-38668
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAGP00000015698	APOBEC_N	PF08210.11	4e-48	1	2
ENSGAGP00000015698	APOBEC_N	PF08210.11	4e-48	2	2
ENSGAGP00000015699	APOBEC_N	PF08210.11	9.4e-25	1	1
ENSGAGP00000015701	APOBEC_N	PF08210.11	2e-24	1	1
ENSGAGP00000015698	APOBEC_C	PF05240.14	1.9e-36	1	2
ENSGAGP00000015698	APOBEC_C	PF05240.14	1.9e-36	2	2
ENSGAGP00000015701	APOBEC_C	PF05240.14	1.8e-19	1	1
ENSGAGP00000015699	APOBEC_C	PF05240.14	2.4e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAGT00000017930	-	564	-	ENSGAGP00000015701	187 (aa)	-	-
ENSGAGT00000017928	-	720	-	ENSGAGP00000015699	239 (aa)	-	-
ENSGAGT00000017927	-	1005	-	ENSGAGP00000015698	334 (aa)	-	-

Gene Model

Click here to download ENSGAGG00000011837's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAGG00000011837's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAGG00000011837	-	85	51.818	ENSGAGG00000021745	-	66	49.194
ENSGAGG00000011837	-	87	54.310	ENSGAGG00000021744	-	84	44.545
ENSGAGG00000011837	-	89	49.194	ENSGAGG00000006624	-	65	48.333
ENSGAGG00000011837	-	55	46.250	ENSGAGG00000011839	-	68	47.436
ENSGAGG00000011837	-	55	46.250	ENSGAGG00000011838	-	68	47.436
ENSGAGG00000011837	-	87	57.059	ENSGAGG00000004947	-	85	56.069

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAGG00000011837	-	90	50.000	ENSG00000111701	APOBEC1	92	46.119	Homo_sapiens
ENSGAGG00000011837	-	88	52.500	ENSAMEG00000007098	APOBEC1	91	48.611	Ailuropoda_melanoleuca
ENSGAGG00000011837	-	86	54.622	ENSACAG00000028578	-	92	54.622	Anolis_carolinensis
ENSGAGG00000011837	-	86	53.333	ENSANAG00000027743	APOBEC1	87	47.248	Aotus_nancymaae
ENSGAGG00000011837	-	86	49.167	ENSBTAG00000014683	APOBEC1	88	47.368	Bos_taurus
ENSGAGG00000011837	-	86	54.167	ENSCJAG00000005398	APOBEC1	91	48.039	Callithrix_jacchus
ENSGAGG00000011837	-	90	50.838	ENSCAFG00000013901	APOBEC1	92	48.402	Canis_familiaris
ENSGAGG00000011837	-	90	50.838	ENSCAFG00020003511	APOBEC1	85	49.510	Canis_lupus_dingo
ENSGAGG00000011837	-	88	50.000	ENSCHIG00000011898	APOBEC1	89	47.143	Capra_hircus
ENSGAGG00000011837	-	68	53.968	ENSTSYG00000029141	APOBEC1	94	52.985	Carlito_syrichta
ENSGAGG00000011837	-	88	48.521	ENSCAPG00000015882	-	94	47.059	Cavia_aperea
ENSGAGG00000011837	-	90	47.442	ENSCPOG00000033068	APOBEC1	90	47.442	Cavia_porcellus
ENSGAGG00000011837	-	86	54.167	ENSCCAG00000022258	APOBEC1	88	47.847	Cebus_capucinus
ENSGAGG00000011837	-	88	52.500	ENSCATG00000021613	APOBEC1	88	46.119	Cercocebus_atys
ENSGAGG00000011837	-	90	46.119	ENSCLAG00000014645	APOBEC1	94	46.119	Chinchilla_lanigera
ENSGAGG00000011837	-	84	48.026	ENSCSAG00000009817	APOBEC1	90	46.552	Chlorocebus_sabaeus
ENSGAGG00000011837	-	88	93.567	ENSCPBG00000014335	-	77	89.175	Chrysemys_picta_bellii
ENSGAGG00000011837	-	89	88.889	ENSCPBG00000014331	-	76	88.889	Chrysemys_picta_bellii
ENSGAGG00000011837	-	90	52.419	ENSCPBG00000014328	-	91	49.282	Chrysemys_picta_bellii
ENSGAGG00000011837	-	90	61.905	ENSCPBG00000014329	-	67	51.639	Chrysemys_picta_bellii
ENSGAGG00000011837	-	92	48.413	ENSCPBG00000014327	-	84	45.540	Chrysemys_picta_bellii
ENSGAGG00000011837	-	87	49.194	ENSCPBG00000017398	-	78	48.413	Chrysemys_picta_bellii
ENSGAGG00000011837	-	88	52.500	ENSCANG00000038359	APOBEC1	90	46.890	Colobus_angolensis_palliatus
ENSGAGG00000011837	-	84	54.783	ENSCGRG00001011130	Apobec1	94	48.165	Cricetulus_griseus_chok1gshd
ENSGAGG00000011837	-	84	54.783	ENSCGRG00000008644	Apobec1	94	48.165	Cricetulus_griseus_crigri
ENSGAGG00000011837	-	97	45.570	ENSDNOG00000010926	APOBEC1	99	45.570	Dasypus_novemcinctus
ENSGAGG00000011837	-	87	45.562	ENSDORG00000023717	Apobec1	93	43.500	Dipodomys_ordii
ENSGAGG00000011837	-	88	53.719	ENSETEG00000004867	APOBEC1	92	48.636	Echinops_telfairi
ENSGAGG00000011837	-	88	51.667	ENSEASG00005015951	APOBEC1	86	49.029	Equus_asinus_asinus
ENSGAGG00000011837	-	80	51.695	ENSECAG00000017163	APOBEC1	90	47.126	Equus_caballus
ENSGAGG00000011837	-	85	39.216	ENSEEUG00000007530	-	96	39.216	Erinaceus_europaeus
ENSGAGG00000011837	-	88	50.370	ENSEEUG00000009112	-	91	47.343	Erinaceus_europaeus
ENSGAGG00000011837	-	90	51.685	ENSFCAG00000009350	APOBEC1	92	48.858	Felis_catus
ENSGAGG00000011837	-	78	62.931	ENSFALG00000007257	-	74	62.931	Ficedula_albicollis
ENSGAGG00000011837	-	88	43.478	ENSFDAG00000018470	APOBEC1	91	43.523	Fukomys_damarensis
ENSGAGG00000011837	-	88	46.875	ENSHGLG00000001495	APOBEC1	92	44.749	Heterocephalus_glaber_female
ENSGAGG00000011837	-	88	46.875	ENSHGLG00100002187	APOBEC1	88	45.455	Heterocephalus_glaber_male
ENSGAGG00000011837	-	71	52.756	ENSSTOG00000021971	APOBEC1	98	49.485	Ictidomys_tridecemlineatus
ENSGAGG00000011837	-	87	51.754	ENSJJAG00000022108	Apobec1	93	46.047	Jaculus_jaculus
ENSGAGG00000011837	-	90	52.381	ENSLAFG00000030837	APOBEC1	91	48.544	Loxodonta_africana
ENSGAGG00000011837	-	88	52.500	ENSMFAG00000000277	APOBEC1	92	46.119	Macaca_fascicularis
ENSGAGG00000011837	-	88	52.500	ENSMNEG00000029670	APOBEC1	92	45.662	Macaca_nemestrina
ENSGAGG00000011837	-	88	52.500	ENSMLEG00000036301	APOBEC1	92	46.119	Mandrillus_leucophaeus
ENSGAGG00000011837	-	87	54.783	ENSMAUG00000022167	Apobec1	95	47.664	Mesocricetus_auratus
ENSGAGG00000011837	-	90	46.825	ENSMICG00000043645	APOBEC1	92	44.749	Microcebus_murinus
ENSGAGG00000011837	-	50	57.534	ENSMOCG00000016170	-	82	57.534	Microtus_ochrogaster
ENSGAGG00000011837	-	87	50.888	ENSMODG00000018004	APOBEC1	85	50.000	Monodelphis_domestica
ENSGAGG00000011837	-	84	55.652	ENSMUSG00000040613	Apobec1	90	50.000	Mus_musculus
ENSGAGG00000011837	-	87	55.085	MGP_PahariEiJ_G0022580	-	90	50.909	Mus_pahari
ENSGAGG00000011837	-	84	55.652	MGP_SPRETEiJ_G0029857	Apobec1	90	50.000	Mus_spretus
ENSGAGG00000011837	-	90	48.603	ENSMPUG00000017532	APOBEC1	92	47.489	Mustela_putorius_furo
ENSGAGG00000011837	-	88	49.704	ENSNGAG00000022607	Apobec1	95	45.662	Nannospalax_galili
ENSGAGG00000011837	-	88	51.667	ENSNLEG00000005342	APOBEC1	92	45.662	Nomascus_leucogenys
ENSGAGG00000011837	-	87	49.112	ENSMEUG00000013406	APOBEC1	89	48.113	Notamacropus_eugenii
ENSGAGG00000011837	-	85	54.237	ENSOPRG00000009508	-	92	54.237	Ochotona_princeps
ENSGAGG00000011837	-	88	50.888	ENSOCUG00000025736	APOBEC1	81	47.489	Oryctolagus_cuniculus
ENSGAGG00000011837	-	91	50.000	ENSOGAG00000026415	APOBEC1	88	45.933	Otolemur_garnettii
ENSGAGG00000011837	-	88	51.667	ENSOARG00000002072	APOBEC1	87	48.804	Ovis_aries
ENSGAGG00000011837	-	81	51.456	ENSPPAG00000027657	APOBEC1	87	45.455	Pan_paniscus
ENSGAGG00000011837	-	90	51.124	ENSPPRG00000012182	APOBEC1	92	48.402	Panthera_pardus
ENSGAGG00000011837	-	90	51.124	ENSPTIG00000020280	APOBEC1	92	48.402	Panthera_tigris_altaica
ENSGAGG00000011837	-	90	49.162	ENSPTRG00000004614	APOBEC1	92	46.575	Pan_troglodytes
ENSGAGG00000011837	-	88	52.500	ENSPANG00000021027	APOBEC1	92	46.119	Papio_anubis
ENSGAGG00000011837	-	85	50.602	ENSPSIG00000012568	-	75	49.143	Pelodiscus_sinensis
ENSGAGG00000011837	-	84	40.439	ENSPSIG00000012791	-	99	40.439	Pelodiscus_sinensis
ENSGAGG00000011837	-	85	54.237	ENSPEMG00000023841	Apobec1	94	47.926	Peromyscus_maniculatus_bairdii
ENSGAGG00000011837	-	88	51.479	ENSPCIG00000023973	APOBEC1	89	49.057	Phascolarctos_cinereus
ENSGAGG00000011837	-	90	50.000	ENSPPYG00000004228	APOBEC1	88	46.119	Pongo_abelii
ENSGAGG00000011837	-	86	52.500	ENSPCAG00000008733	APOBEC1	99	48.663	Procavia_capensis
ENSGAGG00000011837	-	90	47.619	ENSPCOG00000013957	APOBEC1	89	45.098	Propithecus_coquereli
ENSGAGG00000011837	-	68	53.175	ENSPVAG00000010709	APOBEC1	57	52.239	Pteropus_vampyrus
ENSGAGG00000011837	-	84	52.174	ENSRNOG00000015411	Apobec1	94	45.622	Rattus_norvegicus
ENSGAGG00000011837	-	88	50.833	ENSRBIG00000031161	APOBEC1	92	45.662	Rhinopithecus_bieti
ENSGAGG00000011837	-	88	50.833	ENSRROG00000033576	APOBEC1	92	45.662	Rhinopithecus_roxellana
ENSGAGG00000011837	-	86	54.167	ENSSBOG00000030587	APOBEC1	94	54.167	Saimiri_boliviensis_boliviensis
ENSGAGG00000011837	-	87	49.701	ENSSHAG00000008925	APOBEC1	88	48.020	Sarcophilus_harrisii
ENSGAGG00000011837	-	69	57.692	ENSSARG00000011972	-	97	57.692	Sorex_araneus
ENSGAGG00000011837	-	87	57.937	ENSSARG00000000032	-	97	57.937	Sorex_araneus
ENSGAGG00000011837	-	93	54.260	ENSSPUG00000009044	-	85	54.260	Sphenodon_punctatus
ENSGAGG00000011837	-	88	50.888	ENSSSCG00000000668	APOBEC1	91	48.148	Sus_scrofa
ENSGAGG00000011837	-	75	60.000	ENSTGUG00000013118	-	96	60.000	Taeniopygia_guttata
ENSGAGG00000011837	-	88	51.667	ENSTBEG00000010043	APOBEC1	85	47.059	Tupaia_belangeri
ENSGAGG00000011837	-	86	52.500	ENSTTRG00000014015	APOBEC1	99	48.663	Tursiops_truncatus
ENSGAGG00000011837	-	90	49.219	ENSUAMG00000011636	APOBEC1	88	47.222	Ursus_americanus
ENSGAGG00000011837	-	90	49.219	ENSUMAG00000016552	APOBEC1	88	47.222	Ursus_maritimus
ENSGAGG00000011837	-	88	55.000	ENSVPAG00000001343	APOBEC1	92	46.575	Vicugna_pacos
ENSGAGG00000011837	-	90	50.781	ENSVVUG00000010522	APOBEC1	92	47.945	Vulpes_vulpes