EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGAGG00000012102 (Gene tree)
Gene ID: -
Gene Symbol: TARBP1
Alias: TRM3|TRMT3|TRP-185
Full Name: TAR (HIV-1) RNA binding protein 1
Gene Type: protein_coding
Species: Gopherus_agassizii
Status: putative
Strand: Minus strand
Length: 105285 bases
Position: chrPPEB01000490.1:144316-249600
Accession: 11568
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAGP00000016276	SpoU_methylase	PF00588.19	4.7e-30	1	1
ENSGAGP00000016278	SpoU_methylase	PF00588.19	4.8e-30	1	1
ENSGAGP00000016273	SpoU_methylase	PF00588.19	5.5e-30	1	1
ENSGAGP00000016272	SpoU_methylase	PF00588.19	5.6e-30	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAGT00000018580	TARBP1-203	4443	-	ENSGAGP00000016276	1480 (aa)	-	-
ENSGAGT00000018583	TARBP1-204	4230	-	ENSGAGP00000016278	1409 (aa)	-	-
ENSGAGT00000018574	TARBP1-201	4677	-	ENSGAGP00000016272	1558 (aa)	-	-
ENSGAGT00000018577	TARBP1-202	4578	-	ENSGAGP00000016273	1525 (aa)	-	-

Gene Model

Click here to download ENSGAGG00000012102's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAGG00000012102's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAGG00000012102	TARBP1	100	66.973	ENSG00000059588	TARBP1	99	66.544	Homo_sapiens
ENSGAGG00000012102	TARBP1	89	46.605	ENSAPOG00000016419	si:dkey-85a20.4	84	46.724	Acanthochromis_polyacanthus
ENSGAGG00000012102	TARBP1	87	70.958	ENSAMEG00000003359	TARBP1	99	70.958	Ailuropoda_melanoleuca
ENSGAGG00000012102	TARBP1	89	46.089	ENSATEG00000020266	si:dkey-85a20.4	83	46.292	Anabas_testudineus
ENSGAGG00000012102	TARBP1	87	77.624	ENSAPLG00000007666	TARBP1	99	79.407	Anas_platyrhynchos
ENSGAGG00000012102	TARBP1	99	63.927	ENSACAG00000001142	TARBP1	98	63.676	Anolis_carolinensis
ENSGAGG00000012102	TARBP1	90	69.971	ENSANAG00000022031	TARBP1	99	65.935	Aotus_nancymaae
ENSGAGG00000012102	TARBP1	93	77.603	ENSBTAG00000004517	TARBP1	99	77.603	Bos_taurus
ENSGAGG00000012102	TARBP1	100	67.034	ENSCJAG00000018155	TARBP1	99	65.707	Callithrix_jacchus
ENSGAGG00000012102	TARBP1	91	69.810	ENSCAFG00000011533	TARBP1	96	71.053	Canis_familiaris
ENSGAGG00000012102	TARBP1	91	69.480	ENSCAFG00020027141	TARBP1	99	63.575	Canis_lupus_dingo
ENSGAGG00000012102	TARBP1	99	65.665	ENSCHIG00000011437	TARBP1	99	65.788	Capra_hircus
ENSGAGG00000012102	TARBP1	84	70.951	ENSTSYG00000010382	TARBP1	97	71.103	Carlito_syrichta
ENSGAGG00000012102	TARBP1	82	60.939	ENSCAPG00000010831	TARBP1	99	60.939	Cavia_aperea
ENSGAGG00000012102	TARBP1	99	62.345	ENSCPOG00000013995	TARBP1	93	66.935	Cavia_porcellus
ENSGAGG00000012102	TARBP1	99	70.183	ENSCCAG00000037278	TARBP1	99	66.606	Cebus_capucinus
ENSGAGG00000012102	TARBP1	98	71.469	ENSCATG00000011754	TARBP1	99	66.728	Cercocebus_atys
ENSGAGG00000012102	TARBP1	84	67.405	ENSCLAG00000003655	TARBP1	96	67.557	Chinchilla_lanigera
ENSGAGG00000012102	TARBP1	82	73.116	ENSCSAG00000010100	TARBP1	99	73.230	Chlorocebus_sabaeus
ENSGAGG00000012102	TARBP1	95	92.622	ENSCPBG00000005587	TARBP1	99	92.622	Chrysemys_picta_bellii
ENSGAGG00000012102	TARBP1	87	72.894	ENSCANG00000034343	TARBP1	99	72.894	Colobus_angolensis_palliatus
ENSGAGG00000012102	TARBP1	99	62.797	ENSCGRG00001016690	Tarbp1	99	62.249	Cricetulus_griseus_chok1gshd
ENSGAGG00000012102	TARBP1	93	64.447	ENSCGRG00000016893	Tarbp1	98	63.942	Cricetulus_griseus_crigri
ENSGAGG00000012102	TARBP1	89	42.653	ENSCSEG00000005255	si:dkey-85a20.4	84	47.087	Cynoglossus_semilaevis
ENSGAGG00000012102	TARBP1	98	42.069	ENSDARG00000079055	si:dkey-85a20.4	99	55.766	Danio_rerio
ENSGAGG00000012102	TARBP1	100	65.189	ENSDNOG00000008637	TARBP1	98	69.210	Dasypus_novemcinctus
ENSGAGG00000012102	TARBP1	83	64.873	ENSDORG00000007984	Tarbp1	100	65.027	Dipodomys_ordii
ENSGAGG00000012102	TARBP1	99	68.460	ENSEASG00005000252	TARBP1	92	73.192	Equus_asinus_asinus
ENSGAGG00000012102	TARBP1	95	73.319	ENSECAG00000023673	TARBP1	92	73.875	Equus_caballus
ENSGAGG00000012102	TARBP1	89	45.487	ENSELUG00000012193	si:dkey-85a20.4	85	45.357	Esox_lucius
ENSGAGG00000012102	TARBP1	97	67.371	ENSFCAG00000014183	TARBP1	99	63.203	Felis_catus
ENSGAGG00000012102	TARBP1	84	77.206	ENSFALG00000013565	TARBP1	99	77.269	Ficedula_albicollis
ENSGAGG00000012102	TARBP1	82	65.880	ENSFDAG00000001308	TARBP1	99	65.956	Fukomys_damarensis
ENSGAGG00000012102	TARBP1	88	51.531	ENSFHEG00000007565	si:dkey-85a20.4	84	51.531	Fundulus_heteroclitus
ENSGAGG00000012102	TARBP1	89	44.178	ENSGMOG00000004549	si:dkey-85a20.4	98	44.718	Gadus_morhua
ENSGAGG00000012102	TARBP1	100	70.241	ENSGALG00000011000	TARBP1	100	70.431	Gallus_gallus
ENSGAGG00000012102	TARBP1	89	46.338	ENSGAFG00000007387	si:dkey-85a20.4	84	46.585	Gambusia_affinis
ENSGAGG00000012102	TARBP1	89	45.866	ENSGACG00000005865	si:dkey-85a20.4	97	46.032	Gasterosteus_aculeatus
ENSGAGG00000012102	TARBP1	88	70.268	ENSGGOG00000022879	TARBP1	99	70.554	Gorilla_gorilla
ENSGAGG00000012102	TARBP1	89	47.109	ENSHBUG00000008877	si:dkey-85a20.4	83	47.554	Haplochromis_burtoni
ENSGAGG00000012102	TARBP1	99	63.868	ENSHGLG00000011592	TARBP1	99	63.993	Heterocephalus_glaber_female
ENSGAGG00000012102	TARBP1	98	65.702	ENSHGLG00100015169	TARBP1	99	67.789	Heterocephalus_glaber_male
ENSGAGG00000012102	TARBP1	93	42.515	ENSIPUG00000005249	si:dkey-85a20.4	81	45.182	Ictalurus_punctatus
ENSGAGG00000012102	TARBP1	86	65.379	ENSSTOG00000032291	TARBP1	96	65.602	Ictidomys_tridecemlineatus
ENSGAGG00000012102	TARBP1	98	60.999	ENSJJAG00000017840	Tarbp1	99	62.692	Jaculus_jaculus
ENSGAGG00000012102	TARBP1	88	44.281	ENSKMAG00000017546	si:dkey-85a20.4	82	47.401	Kryptolebias_marmoratus
ENSGAGG00000012102	TARBP1	78	51.135	ENSLBEG00000012132	si:dkey-85a20.4	84	47.653	Labrus_bergylta
ENSGAGG00000012102	TARBP1	99	52.731	ENSLACG00000004337	TARBP1	84	58.631	Latimeria_chalumnae
ENSGAGG00000012102	TARBP1	89	52.568	ENSLOCG00000016214	si:dkey-85a20.4	83	52.766	Lepisosteus_oculatus
ENSGAGG00000012102	TARBP1	95	71.429	ENSLAFG00000011394	TARBP1	91	72.044	Loxodonta_africana
ENSGAGG00000012102	TARBP1	100	65.475	ENSMFAG00000041068	TARBP1	99	65.389	Macaca_fascicularis
ENSGAGG00000012102	TARBP1	98	69.431	ENSMMUG00000021703	TARBP1	99	64.936	Macaca_mulatta
ENSGAGG00000012102	TARBP1	98	71.328	ENSMNEG00000045002	TARBP1	99	66.667	Macaca_nemestrina
ENSGAGG00000012102	TARBP1	87	72.868	ENSMLEG00000044182	TARBP1	99	72.868	Mandrillus_leucophaeus
ENSGAGG00000012102	TARBP1	89	46.366	ENSMAMG00000021760	si:dkey-85a20.4	84	46.792	Mastacembelus_armatus
ENSGAGG00000012102	TARBP1	89	47.155	ENSMZEG00005005751	si:dkey-85a20.4	83	47.605	Maylandia_zebra
ENSGAGG00000012102	TARBP1	99	62.125	ENSMAUG00000020968	Tarbp1	99	61.935	Mesocricetus_auratus
ENSGAGG00000012102	TARBP1	99	59.828	ENSMICG00000015280	TARBP1	99	59.704	Microcebus_murinus
ENSGAGG00000012102	TARBP1	99	62.524	ENSMOCG00000004128	Tarbp1	99	62.186	Microtus_ochrogaster
ENSGAGG00000012102	TARBP1	99	41.284	ENSMMOG00000007795	si:dkey-85a20.4	83	45.138	Mola_mola
ENSGAGG00000012102	TARBP1	99	72.507	ENSMODG00000008504	TARBP1	91	73.338	Monodelphis_domestica
ENSGAGG00000012102	TARBP1	88	46.187	ENSMALG00000002916	si:dkey-85a20.4	84	46.395	Monopterus_albus
ENSGAGG00000012102	TARBP1	99	62.313	MGP_CAROLIEiJ_G0031729	Tarbp1	99	62.123	Mus_caroli
ENSGAGG00000012102	TARBP1	99	62.125	ENSMUSG00000090290	Tarbp1	99	62.084	Mus_musculus
ENSGAGG00000012102	TARBP1	99	62.383	MGP_PahariEiJ_G0023326	Tarbp1	99	62.132	Mus_pahari
ENSGAGG00000012102	TARBP1	99	62.250	MGP_SPRETEiJ_G0032846	Tarbp1	99	62.210	Mus_spretus
ENSGAGG00000012102	TARBP1	80	70.305	ENSMPUG00000002802	TARBP1	99	70.305	Mustela_putorius_furo
ENSGAGG00000012102	TARBP1	87	65.189	ENSMLUG00000002414	TARBP1	99	65.189	Myotis_lucifugus
ENSGAGG00000012102	TARBP1	97	71.680	ENSNLEG00000002518	TARBP1	99	66.911	Nomascus_leucogenys
ENSGAGG00000012102	TARBP1	67	78.602	ENSMEUG00000011370	-	67	78.602	Notamacropus_eugenii
ENSGAGG00000012102	TARBP1	73	75.208	ENSOPRG00000013822	TARBP1	70	75.208	Ochotona_princeps
ENSGAGG00000012102	TARBP1	99	64.464	ENSODEG00000005238	TARBP1	99	64.099	Octodon_degus
ENSGAGG00000012102	TARBP1	89	46.877	ENSONIG00000009789	si:dkey-85a20.4	97	47.350	Oreochromis_niloticus
ENSGAGG00000012102	TARBP1	97	69.746	ENSOCUG00000017418	TARBP1	92	71.010	Oryctolagus_cuniculus
ENSGAGG00000012102	TARBP1	89	45.628	ENSORLG00000010529	si:dkey-85a20.4	83	45.926	Oryzias_latipes
ENSGAGG00000012102	TARBP1	89	45.589	ENSORLG00020019264	si:dkey-85a20.4	83	45.815	Oryzias_latipes_hni
ENSGAGG00000012102	TARBP1	89	45.448	ENSORLG00015003276	si:dkey-85a20.4	83	45.671	Oryzias_latipes_hsok
ENSGAGG00000012102	TARBP1	99	64.005	ENSOGAG00000002379	TARBP1	92	69.203	Otolemur_garnettii
ENSGAGG00000012102	TARBP1	91	69.979	ENSOARG00000003434	TARBP1	99	66.433	Ovis_aries
ENSGAGG00000012102	TARBP1	88	72.807	ENSPPAG00000028097	TARBP1	99	72.807	Pan_paniscus
ENSGAGG00000012102	TARBP1	99	64.317	ENSPPRG00000013561	TARBP1	98	71.429	Panthera_pardus
ENSGAGG00000012102	TARBP1	86	71.174	ENSPTIG00000009281	TARBP1	99	71.174	Panthera_tigris_altaica
ENSGAGG00000012102	TARBP1	97	71.609	ENSPTRG00000002124	TARBP1	99	66.707	Pan_troglodytes
ENSGAGG00000012102	TARBP1	98	71.469	ENSPANG00000021933	TARBP1	99	66.972	Papio_anubis
ENSGAGG00000012102	TARBP1	89	47.368	ENSPKIG00000016716	si:dkey-85a20.4	82	48.127	Paramormyrops_kingsleyae
ENSGAGG00000012102	TARBP1	83	89.682	ENSPSIG00000010699	TARBP1	100	89.682	Pelodiscus_sinensis
ENSGAGG00000012102	TARBP1	99	63.357	ENSPEMG00000006888	Tarbp1	99	63.020	Peromyscus_maniculatus_bairdii
ENSGAGG00000012102	TARBP1	91	86.893	ENSPCIG00000029710	TARBP1	99	86.893	Phascolarctos_cinereus
ENSGAGG00000012102	TARBP1	89	46.105	ENSPFOG00000013020	si:dkey-85a20.4	97	46.242	Poecilia_formosa
ENSGAGG00000012102	TARBP1	89	46.181	ENSPLAG00000006044	si:dkey-85a20.4	84	46.423	Poecilia_latipinna
ENSGAGG00000012102	TARBP1	89	46.143	ENSPMEG00000017857	si:dkey-85a20.4	84	46.385	Poecilia_mexicana
ENSGAGG00000012102	TARBP1	89	45.992	ENSPREG00000022753	si:dkey-85a20.4	84	46.303	Poecilia_reticulata
ENSGAGG00000012102	TARBP1	89	71.886	ENSPPYG00000000102	TARBP1	99	71.886	Pongo_abelii
ENSGAGG00000012102	TARBP1	86	87.500	ENSPCAG00000004808	TARBP1	85	87.500	Procavia_capensis
ENSGAGG00000012102	TARBP1	99	64.417	ENSPCOG00000005666	TARBP1	92	69.276	Propithecus_coquereli
ENSGAGG00000012102	TARBP1	97	56.942	ENSPVAG00000014798	TARBP1	99	54.540	Pteropus_vampyrus
ENSGAGG00000012102	TARBP1	89	46.127	ENSPNYG00000019135	si:dkey-85a20.4	83	46.555	Pundamilia_nyererei
ENSGAGG00000012102	TARBP1	99	60.100	ENSRNOG00000053574	Tarbp1	99	59.875	Rattus_norvegicus
ENSGAGG00000012102	TARBP1	93	65.962	ENSRBIG00000043362	TARBP1	99	62.348	Rhinopithecus_bieti
ENSGAGG00000012102	TARBP1	100	68.458	ENSRROG00000029527	TARBP1	99	68.381	Rhinopithecus_roxellana
ENSGAGG00000012102	TARBP1	87	72.459	ENSSBOG00000034503	TARBP1	97	72.459	Saimiri_boliviensis_boliviensis
ENSGAGG00000012102	TARBP1	87	73.216	ENSSHAG00000000013	TARBP1	100	73.216	Sarcophilus_harrisii
ENSGAGG00000012102	TARBP1	87	46.486	ENSSFOG00015002660	si:dkey-85a20.4	98	46.843	Scleropages_formosus
ENSGAGG00000012102	TARBP1	87	47.873	ENSSMAG00000007081	si:dkey-85a20.4	82	47.945	Scophthalmus_maximus
ENSGAGG00000012102	TARBP1	89	45.409	ENSSDUG00000023566	si:dkey-85a20.4	83	45.764	Seriola_dumerili
ENSGAGG00000012102	TARBP1	89	46.947	ENSSLDG00000020200	si:dkey-85a20.4	84	47.592	Seriola_lalandi_dorsalis
ENSGAGG00000012102	TARBP1	87	79.535	ENSSARG00000012207	TARBP1	84	79.535	Sorex_araneus
ENSGAGG00000012102	TARBP1	100	72.862	ENSSPUG00000015364	TARBP1	99	81.031	Sphenodon_punctatus
ENSGAGG00000012102	TARBP1	89	46.456	ENSSPAG00000007213	si:dkey-85a20.4	83	46.686	Stegastes_partitus
ENSGAGG00000012102	TARBP1	96	70.311	ENSSSCG00000010160	TARBP1	92	73.596	Sus_scrofa
ENSGAGG00000012102	TARBP1	84	77.965	ENSTGUG00000010214	TARBP1	100	77.965	Taeniopygia_guttata
ENSGAGG00000012102	TARBP1	94	41.625	ENSTNIG00000016586	si:dkey-85a20.4	99	45.903	Tetraodon_nigroviridis
ENSGAGG00000012102	TARBP1	92	67.654	ENSTTRG00000008707	TARBP1	88	72.727	Tursiops_truncatus
ENSGAGG00000012102	TARBP1	85	70.451	ENSUMAG00000006730	TARBP1	99	70.451	Ursus_maritimus
ENSGAGG00000012102	TARBP1	72	86.458	ENSVPAG00000007665	TARBP1	74	86.458	Vicugna_pacos
ENSGAGG00000012102	TARBP1	90	68.951	ENSVVUG00000007460	TARBP1	99	69.258	Vulpes_vulpes
ENSGAGG00000012102	TARBP1	87	58.473	ENSXETG00000016224	tarbp1	99	58.473	Xenopus_tropicalis
ENSGAGG00000012102	TARBP1	81	51.018	ENSXCOG00000011779	si:dkey-85a20.4	91	50.815	Xiphophorus_couchianus
ENSGAGG00000012102	TARBP1	65	65.957	ENSXMAG00000009600	si:dkey-85a20.4	94	65.957	Xiphophorus_maculatus