EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAGG00000012440 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Gopherus_agassizii
Status: putative
Strand: Minus strand
Length: 5691 bases
Position: chrPPEB01012940.1:6401-12091
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAGP00000016633	Fox-1_C	PF12414.8	1.2e-34	1	1
ENSGAGP00000016633	RRM_1	PF00076.22	1.5e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAGT00000018988	-	1851	-	ENSGAGP00000016633	276 (aa)	-	-

Gene Model

Click here to download ENSGAGG00000012440's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAGG00000012440's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAGG00000012440	-	87	63.100	ENSGAGG00000023681	RBFOX1	78	58.108
ENSGAGG00000012440	-	94	64.773	ENSGAGG00000020025	RBFOX3	79	64.400
ENSGAGG00000012440	-	87	61.922	ENSGAGG00000025884	RBFOX2	74	61.210

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAGG00000012440	-	79	72.294	ENSAPOG00000016304	rbfox1l	71	63.177	Acanthochromis_polyacanthus
ENSGAGG00000012440	-	84	66.387	ENSACIG00000006441	rbfox1l	62	63.158	Amphilophus_citrinellus
ENSGAGG00000012440	-	84	70.082	ENSAOCG00000020938	rbfox1l	83	61.888	Amphiprion_ocellaris
ENSGAGG00000012440	-	84	73.469	ENSAPEG00000008232	rbfox1l	74	65.052	Amphiprion_percula
ENSGAGG00000012440	-	84	71.784	ENSATEG00000022649	rbfox1l	65	67.206	Anabas_testudineus
ENSGAGG00000012440	-	92	85.328	ENSACAG00000011931	-	97	85.328	Anolis_carolinensis
ENSGAGG00000012440	-	84	72.016	ENSACLG00000021394	rbfox1l	65	68.254	Astatotilapia_calliptera
ENSGAGG00000012440	-	84	74.897	ENSAMXG00000010470	rbfox1l	69	68.045	Astyanax_mexicanus
ENSGAGG00000012440	-	92	97.244	ENSCPBG00000010944	-	71	97.244	Chrysemys_picta_bellii
ENSGAGG00000012440	-	86	74.390	ENSCSEG00000018898	rbfox1l	64	73.061	Cynoglossus_semilaevis
ENSGAGG00000012440	-	87	72.047	ENSCVAG00000007986	rbfox1l	65	69.565	Cyprinodon_variegatus
ENSGAGG00000012440	-	86	69.636	ENSDARG00000021184	rbfox1l	65	69.323	Danio_rerio
ENSGAGG00000012440	-	84	68.110	ENSELUG00000015077	rbfox1l	69	65.779	Esox_lucius
ENSGAGG00000012440	-	61	80.488	ENSFHEG00000016557	rbfox1l	54	80.488	Fundulus_heteroclitus
ENSGAGG00000012440	-	84	74.390	ENSGMOG00000005040	rbfox1l	68	69.582	Gadus_morhua
ENSGAGG00000012440	-	87	72.441	ENSGAFG00000013211	rbfox1l	69	69.960	Gambusia_affinis
ENSGAGG00000012440	-	86	71.200	ENSGACG00000010757	rbfox1l	64	68.675	Gasterosteus_aculeatus
ENSGAGG00000012440	-	84	72.016	ENSHBUG00000013406	rbfox1l	65	68.254	Haplochromis_burtoni
ENSGAGG00000012440	-	84	73.361	ENSHCOG00000020771	rbfox1l	70	68.846	Hippocampus_comes
ENSGAGG00000012440	-	84	74.486	ENSIPUG00000000065	rbfox1l	71	71.146	Ictalurus_punctatus
ENSGAGG00000012440	-	84	73.171	ENSKMAG00000005146	rbfox1l	64	70.400	Kryptolebias_marmoratus
ENSGAGG00000012440	-	86	70.800	ENSLBEG00000017089	rbfox1l	64	70.683	Labrus_bergylta
ENSGAGG00000012440	-	84	71.020	ENSMAMG00000019480	rbfox1l	71	65.942	Mastacembelus_armatus
ENSGAGG00000012440	-	84	72.016	ENSMZEG00005016374	rbfox1l	65	68.254	Maylandia_zebra
ENSGAGG00000012440	-	86	71.721	ENSMMOG00000016530	rbfox1l	64	69.959	Mola_mola
ENSGAGG00000012440	-	86	72.358	ENSMALG00000009384	rbfox1l	66	72.245	Monopterus_albus
ENSGAGG00000012440	-	84	72.385	ENSNBRG00000003346	rbfox1l	65	68.548	Neolamprologus_brichardi
ENSGAGG00000012440	-	84	72.016	ENSONIG00000012754	rbfox1l	65	68.254	Oreochromis_niloticus
ENSGAGG00000012440	-	84	74.286	ENSORLG00000011269	rbfox1l	66	71.654	Oryzias_latipes
ENSGAGG00000012440	-	84	72.245	ENSORLG00020000162	rbfox1l	68	71.260	Oryzias_latipes_hni
ENSGAGG00000012440	-	84	72.653	ENSORLG00015013464	rbfox1l	66	71.654	Oryzias_latipes_hsok
ENSGAGG00000012440	-	84	71.837	ENSOMEG00000010584	rbfox1l	66	70.866	Oryzias_melastigma
ENSGAGG00000012440	-	86	73.387	ENSPKIG00000012029	rbfox1l	65	70.916	Paramormyrops_kingsleyae
ENSGAGG00000012440	-	84	68.333	ENSPMGG00000012082	rbfox1l	70	63.433	Periophthalmus_magnuspinnatus
ENSGAGG00000012440	-	87	71.765	ENSPFOG00000009338	rbfox1l	66	69.291	Poecilia_formosa
ENSGAGG00000012440	-	83	64.583	ENSPLAG00000012816	rbfox1l	73	61.925	Poecilia_latipinna
ENSGAGG00000012440	-	87	68.110	ENSPMEG00000017597	rbfox1l	64	65.737	Poecilia_mexicana
ENSGAGG00000012440	-	90	66.667	ENSPREG00000007940	rbfox1l	66	64.341	Poecilia_reticulata
ENSGAGG00000012440	-	84	72.016	ENSPNYG00000002098	rbfox1l	65	68.254	Pundamilia_nyererei
ENSGAGG00000012440	-	83	75.934	ENSPNAG00000001620	rbfox1l	69	68.045	Pygocentrus_nattereri
ENSGAGG00000012440	-	84	74.380	ENSSFOG00015000675	rbfox1l	66	72.358	Scleropages_formosus
ENSGAGG00000012440	-	86	72.400	ENSSMAG00000013090	rbfox1l	66	70.683	Scophthalmus_maximus
ENSGAGG00000012440	-	84	69.512	ENSSDUG00000008705	rbfox1l	65	66.667	Seriola_dumerili
ENSGAGG00000012440	-	84	68.699	ENSSLDG00000022256	rbfox1l	66	65.882	Seriola_lalandi_dorsalis
ENSGAGG00000012440	-	84	73.469	ENSSPAG00000016620	rbfox1l	66	70.079	Stegastes_partitus
ENSGAGG00000012440	-	80	70.742	ENSTRUG00000015905	rbfox1l	62	69.869	Takifugu_rubripes
ENSGAGG00000012440	-	86	67.803	ENSTNIG00000008088	rbfox1l	99	67.300	Tetraodon_nigroviridis
ENSGAGG00000012440	-	87	72.047	ENSXMAG00000023471	rbfox1l	65	69.565	Xiphophorus_maculatus