EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGAGG00000012595 (Gene tree)
Gene ID: -
Gene Symbol: RIF1
Alias: FLJ10599|FLJ12870
Full Name: replication timing regulatory factor 1
Gene Type: protein_coding
Species: Gopherus_agassizii
Status: putative
Strand: Plus strand
Length: 58321 bases
Position: chrPPEB01000290.1:3557-61877
Accession: 23207
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAGP00000017053	Rif1_N	PF12231.8	2.2e-79	1	1
ENSGAGP00000017043	Rif1_N	PF12231.8	2.2e-79	1	1
ENSGAGP00000016972	Rif1_N	PF12231.8	1.9e-71	1	1
ENSGAGP00000017164	Rif1_N	PF12231.8	6.4e-71	1	1
ENSGAGP00000017151	Rif1_N	PF12231.8	6.6e-71	1	1
ENSGAGP00000017169	Rif1_N	PF12231.8	6.7e-71	1	1
ENSGAGP00000017155	Rif1_N	PF12231.8	7.2e-71	1	1
ENSGAGP00000017148	Rif1_N	PF12231.8	8.2e-71	1	1
ENSGAGP00000017145	Rif1_N	PF12231.8	8.4e-71	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAGT00000019568	RIF1-204	7098	-	ENSGAGP00000017145	2365 (aa)	-	-
ENSGAGT00000019461	RIF1-203	6405	-	ENSGAGP00000017053	2083 (aa)	-	-
ENSGAGT00000019589	RIF1-208	6504	-	ENSGAGP00000017164	2167 (aa)	-	-
ENSGAGT00000019451	RIF1-202	6405	-	ENSGAGP00000017043	2083 (aa)	-	-
ENSGAGT00000019370	RIF1-201	6684	-	ENSGAGP00000016972	2227 (aa)	-	-
ENSGAGT00000019571	RIF1-205	7020	-	ENSGAGP00000017148	2339 (aa)	-	-
ENSGAGT00000019574	RIF1-206	6630	-	ENSGAGP00000017151	2209 (aa)	-	-
ENSGAGT00000019594	RIF1-209	6459	-	ENSGAGP00000017169	2152 (aa)	-	-
ENSGAGT00000019579	RIF1-207	6588	-	ENSGAGP00000017155	2195 (aa)	-	-

Gene Model

Click here to download ENSGAGG00000012595's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAGG00000012595's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAGG00000012595	RIF1	97	72.372	ENSG00000080345	RIF1	97	71.220	Homo_sapiens
ENSGAGG00000012595	RIF1	77	47.606	ENSAPOG00000011073	rif1	66	50.485	Acanthochromis_polyacanthus
ENSGAGG00000012595	RIF1	99	67.200	ENSAMEG00000008461	RIF1	89	72.289	Ailuropoda_melanoleuca
ENSGAGG00000012595	RIF1	71	48.603	ENSACIG00000017765	rif1	74	51.327	Amphilophus_citrinellus
ENSGAGG00000012595	RIF1	73	47.965	ENSAOCG00000017231	rif1	65	50.727	Amphiprion_ocellaris
ENSGAGG00000012595	RIF1	76	54.949	ENSAPEG00000013228	rif1	65	55.006	Amphiprion_percula
ENSGAGG00000012595	RIF1	85	43.916	ENSATEG00000022887	rif1	70	50.859	Anabas_testudineus
ENSGAGG00000012595	RIF1	98	81.593	ENSAPLG00000007092	RIF1	92	81.593	Anas_platyrhynchos
ENSGAGG00000012595	RIF1	99	68.328	ENSACAG00000003714	RIF1	94	68.328	Anolis_carolinensis
ENSGAGG00000012595	RIF1	92	73.574	ENSANAG00000024840	RIF1	88	72.455	Aotus_nancymaae
ENSGAGG00000012595	RIF1	90	50.781	ENSAMXG00000010910	rif1	88	50.446	Astyanax_mexicanus
ENSGAGG00000012595	RIF1	81	73.604	ENSBTAG00000021020	RIF1	82	73.604	Bos_taurus
ENSGAGG00000012595	RIF1	93	73.156	ENSCJAG00000003138	RIF1	85	72.059	Callithrix_jacchus
ENSGAGG00000012595	RIF1	98	72.072	ENSCAFG00000005670	RIF1	82	70.871	Canis_familiaris
ENSGAGG00000012595	RIF1	93	72.072	ENSCAFG00020016401	RIF1	86	70.958	Canis_lupus_dingo
ENSGAGG00000012595	RIF1	96	63.198	ENSCHIG00000020327	RIF1	86	69.851	Capra_hircus
ENSGAGG00000012595	RIF1	97	72.205	ENSTSYG00000008861	RIF1	88	71.084	Carlito_syrichta
ENSGAGG00000012595	RIF1	87	62.640	ENSCAPG00000008957	RIF1	89	62.849	Cavia_aperea
ENSGAGG00000012595	RIF1	98	68.436	ENSCPOG00000037898	RIF1	89	67.318	Cavia_porcellus
ENSGAGG00000012595	RIF1	93	74.251	ENSCCAG00000024760	RIF1	85	73.054	Cebus_capucinus
ENSGAGG00000012595	RIF1	93	72.673	ENSCATG00000033353	RIF1	88	71.557	Cercocebus_atys
ENSGAGG00000012595	RIF1	93	70.517	ENSCLAG00000001517	RIF1	85	70.181	Chinchilla_lanigera
ENSGAGG00000012595	RIF1	97	72.973	ENSCSAG00000016089	RIF1	88	71.856	Chlorocebus_sabaeus
ENSGAGG00000012595	RIF1	92	73.193	ENSCHOG00000007187	RIF1	84	71.988	Choloepus_hoffmanni
ENSGAGG00000012595	RIF1	100	94.892	ENSCPBG00000025885	RIF1	100	94.892	Chrysemys_picta_bellii
ENSGAGG00000012595	RIF1	92	80.357	ENSCANG00000028962	RIF1	87	78.571	Colobus_angolensis_palliatus
ENSGAGG00000012595	RIF1	95	66.006	ENSCGRG00001024589	Rif1	90	65.722	Cricetulus_griseus_chok1gshd
ENSGAGG00000012595	RIF1	94	66.006	ENSCGRG00000010713	Rif1	89	65.722	Cricetulus_griseus_crigri
ENSGAGG00000012595	RIF1	66	54.982	ENSCSEG00000003945	rif1	65	54.982	Cynoglossus_semilaevis
ENSGAGG00000012595	RIF1	69	47.458	ENSCVAG00000022479	rif1	67	48.276	Cyprinodon_variegatus
ENSGAGG00000012595	RIF1	71	50.648	ENSDARG00000062650	rif1	65	52.075	Danio_rerio
ENSGAGG00000012595	RIF1	93	73.438	ENSDNOG00000011194	RIF1	85	72.188	Dasypus_novemcinctus
ENSGAGG00000012595	RIF1	85	58.984	ENSETEG00000012421	RIF1	71	68.627	Echinops_telfairi
ENSGAGG00000012595	RIF1	90	81.395	ENSEASG00005023434	RIF1	85	81.395	Equus_asinus_asinus
ENSGAGG00000012595	RIF1	96	71.557	ENSECAG00000012679	RIF1	87	72.659	Equus_caballus
ENSGAGG00000012595	RIF1	68	51.420	ENSELUG00000006826	rif1	51	60.000	Esox_lucius
ENSGAGG00000012595	RIF1	97	72.372	ENSFCAG00000029742	RIF1	88	71.772	Felis_catus
ENSGAGG00000012595	RIF1	87	68.033	ENSFALG00000013874	RIF1	99	67.760	Ficedula_albicollis
ENSGAGG00000012595	RIF1	97	69.318	ENSFDAG00000006538	RIF1	89	68.466	Fukomys_damarensis
ENSGAGG00000012595	RIF1	84	46.027	ENSFHEG00000013721	rif1	80	43.742	Fundulus_heteroclitus
ENSGAGG00000012595	RIF1	60	49.469	ENSGMOG00000003517	rif1	85	49.434	Gadus_morhua
ENSGAGG00000012595	RIF1	94	80.480	ENSGALG00000012484	RIF1	97	80.480	Gallus_gallus
ENSGAGG00000012595	RIF1	72	53.717	ENSGAFG00000017196	rif1	70	52.805	Gambusia_affinis
ENSGAGG00000012595	RIF1	64	56.327	ENSGACG00000008579	rif1	65	55.691	Gasterosteus_aculeatus
ENSGAGG00000012595	RIF1	85	72.156	ENSGGOG00000040178	RIF1	83	70.958	Gorilla_gorilla
ENSGAGG00000012595	RIF1	74	49.388	ENSHBUG00000007125	rif1	66	53.184	Haplochromis_burtoni
ENSGAGG00000012595	RIF1	90	74.112	ENSHGLG00100009807	RIF1	88	71.144	Heterocephalus_glaber_male
ENSGAGG00000012595	RIF1	68	49.720	ENSHCOG00000015943	rif1	60	49.560	Hippocampus_comes
ENSGAGG00000012595	RIF1	71	54.016	ENSIPUG00000021703	rif1	65	54.034	Ictalurus_punctatus
ENSGAGG00000012595	RIF1	97	71.772	ENSSTOG00000020712	RIF1	89	71.257	Ictidomys_tridecemlineatus
ENSGAGG00000012595	RIF1	92	70.948	ENSJJAG00000023000	Rif1	86	69.725	Jaculus_jaculus
ENSGAGG00000012595	RIF1	84	44.346	ENSKMAG00000002852	rif1	70	50.121	Kryptolebias_marmoratus
ENSGAGG00000012595	RIF1	61	60.000	ENSLBEG00000023196	rif1	59	52.045	Labrus_bergylta
ENSGAGG00000012595	RIF1	96	63.231	ENSLACG00000005425	RIF1	92	63.231	Latimeria_chalumnae
ENSGAGG00000012595	RIF1	98	52.235	ENSLOCG00000002657	rif1	99	51.187	Lepisosteus_oculatus
ENSGAGG00000012595	RIF1	94	74.320	ENSLAFG00000009796	RIF1	87	74.320	Loxodonta_africana
ENSGAGG00000012595	RIF1	97	72.973	ENSMFAG00000032233	RIF1	88	71.856	Macaca_fascicularis
ENSGAGG00000012595	RIF1	97	72.973	ENSMMUG00000008611	RIF1	88	71.856	Macaca_mulatta
ENSGAGG00000012595	RIF1	98	72.973	ENSMNEG00000031616	RIF1	89	71.856	Macaca_nemestrina
ENSGAGG00000012595	RIF1	97	72.673	ENSMLEG00000042945	RIF1	88	71.557	Mandrillus_leucophaeus
ENSGAGG00000012595	RIF1	69	50.909	ENSMAMG00000001745	rif1	64	51.704	Mastacembelus_armatus
ENSGAGG00000012595	RIF1	72	51.987	ENSMZEG00005020920	rif1	72	52.365	Maylandia_zebra
ENSGAGG00000012595	RIF1	96	80.785	ENSMGAG00000012732	RIF1	91	80.785	Meleagris_gallopavo
ENSGAGG00000012595	RIF1	95	73.407	ENSMAUG00000013158	Rif1	90	73.407	Mesocricetus_auratus
ENSGAGG00000012595	RIF1	98	73.574	ENSMICG00000046127	RIF1	89	72.455	Microcebus_murinus
ENSGAGG00000012595	RIF1	95	68.373	ENSMOCG00000009381	Rif1	88	67.169	Microtus_ochrogaster
ENSGAGG00000012595	RIF1	64	55.172	ENSMMOG00000006519	rif1	64	55.172	Mola_mola
ENSGAGG00000012595	RIF1	96	71.642	ENSMODG00000003703	RIF1	90	71.642	Monodelphis_domestica
ENSGAGG00000012595	RIF1	72	48.333	ENSMALG00000016759	rif1	74	49.764	Monopterus_albus
ENSGAGG00000012595	RIF1	97	67.941	MGP_CAROLIEiJ_G0023555	Rif1	90	66.765	Mus_caroli
ENSGAGG00000012595	RIF1	99	68.622	ENSMUSG00000036202	Rif1	89	67.449	Mus_musculus
ENSGAGG00000012595	RIF1	91	68.882	MGP_PahariEiJ_G0025006	Rif1	90	67.674	Mus_pahari
ENSGAGG00000012595	RIF1	99	68.529	MGP_SPRETEiJ_G0024476	Rif1	90	67.353	Mus_spretus
ENSGAGG00000012595	RIF1	97	72.754	ENSMPUG00000000371	RIF1	88	72.156	Mustela_putorius_furo
ENSGAGG00000012595	RIF1	88	70.571	ENSMLUG00000003376	RIF1	88	69.461	Myotis_lucifugus
ENSGAGG00000012595	RIF1	100	68.451	ENSNGAG00000009268	Rif1	92	67.887	Nannospalax_galili
ENSGAGG00000012595	RIF1	70	51.090	ENSNBRG00000014257	rif1	73	51.011	Neolamprologus_brichardi
ENSGAGG00000012595	RIF1	94	69.492	ENSNLEG00000010955	RIF1	88	63.964	Nomascus_leucogenys
ENSGAGG00000012595	RIF1	86	75.111	ENSMEUG00000007601	-	85	75.111	Notamacropus_eugenii
ENSGAGG00000012595	RIF1	96	72.205	ENSODEG00000003950	RIF1	89	70.997	Octodon_degus
ENSGAGG00000012595	RIF1	70	51.903	ENSONIG00000013657	rif1	68	51.787	Oreochromis_niloticus
ENSGAGG00000012595	RIF1	84	75.182	ENSOANG00000006078	-	72	75.586	Ornithorhynchus_anatinus
ENSGAGG00000012595	RIF1	93	71.171	ENSOCUG00000017435	RIF1	85	70.571	Oryctolagus_cuniculus
ENSGAGG00000012595	RIF1	71	46.657	ENSORLG00020001302	rif1	68	47.994	Oryzias_latipes_hni
ENSGAGG00000012595	RIF1	70	47.713	ENSORLG00015000009	rif1	68	49.197	Oryzias_latipes_hsok
ENSGAGG00000012595	RIF1	68	50.739	ENSOMEG00000021513	rif1	69	50.485	Oryzias_melastigma
ENSGAGG00000012595	RIF1	97	72.508	ENSOGAG00000006141	RIF1	89	71.386	Otolemur_garnettii
ENSGAGG00000012595	RIF1	96	63.198	ENSOARG00000008930	RIF1	86	69.851	Ovis_aries
ENSGAGG00000012595	RIF1	97	72.372	ENSPPAG00000023754	RIF1	88	71.257	Pan_paniscus
ENSGAGG00000012595	RIF1	97	72.372	ENSPPRG00000003618	RIF1	88	71.772	Panthera_pardus
ENSGAGG00000012595	RIF1	95	72.372	ENSPTIG00000020652	RIF1	86	71.772	Panthera_tigris_altaica
ENSGAGG00000012595	RIF1	97	72.372	ENSPTRG00000012534	RIF1	88	71.257	Pan_troglodytes
ENSGAGG00000012595	RIF1	97	72.973	ENSPANG00000008525	RIF1	88	71.856	Papio_anubis
ENSGAGG00000012595	RIF1	78	54.925	ENSPKIG00000004267	rif1	90	50.530	Paramormyrops_kingsleyae
ENSGAGG00000012595	RIF1	79	45.833	ENSPMGG00000016141	rif1	80	46.748	Periophthalmus_magnuspinnatus
ENSGAGG00000012595	RIF1	92	68.976	ENSPEMG00000000446	Rif1	85	67.771	Peromyscus_maniculatus_bairdii
ENSGAGG00000012595	RIF1	99	73.112	ENSPCIG00000009185	RIF1	91	72.810	Phascolarctos_cinereus
ENSGAGG00000012595	RIF1	72	49.633	ENSPFOG00000017804	rif1	81	46.631	Poecilia_formosa
ENSGAGG00000012595	RIF1	66	50.168	ENSPFOG00000000554	-	79	46.617	Poecilia_formosa
ENSGAGG00000012595	RIF1	76	49.703	ENSPLAG00000017945	rif1	80	45.895	Poecilia_latipinna
ENSGAGG00000012595	RIF1	62	48.135	ENSPMEG00000006897	-	65	51.606	Poecilia_mexicana
ENSGAGG00000012595	RIF1	68	62.766	ENSPREG00000018052	rif1	72	52.684	Poecilia_reticulata
ENSGAGG00000012595	RIF1	97	72.673	ENSPPYG00000012846	RIF1	88	71.557	Pongo_abelii
ENSGAGG00000012595	RIF1	71	78.947	ENSPCAG00000009032	RIF1	62	78.947	Procavia_capensis
ENSGAGG00000012595	RIF1	98	73.574	ENSPCOG00000027888	RIF1	85	72.455	Propithecus_coquereli
ENSGAGG00000012595	RIF1	85	73.077	ENSPVAG00000014276	RIF1	80	71.538	Pteropus_vampyrus
ENSGAGG00000012595	RIF1	75	50.535	ENSPNYG00000012940	rif1	70	51.140	Pundamilia_nyererei
ENSGAGG00000012595	RIF1	71	52.994	ENSPNAG00000016685	rif1	64	54.538	Pygocentrus_nattereri
ENSGAGG00000012595	RIF1	99	68.035	ENSRNOG00000054901	Rif1	91	66.862	Rattus_norvegicus
ENSGAGG00000012595	RIF1	97	73.574	ENSRBIG00000003704	RIF1	88	72.455	Rhinopithecus_bieti
ENSGAGG00000012595	RIF1	97	73.273	ENSRROG00000028206	RIF1	88	72.156	Rhinopithecus_roxellana
ENSGAGG00000012595	RIF1	89	74.251	ENSSBOG00000029530	RIF1	85	73.054	Saimiri_boliviensis_boliviensis
ENSGAGG00000012595	RIF1	96	73.874	ENSSHAG00000018552	RIF1	91	73.874	Sarcophilus_harrisii
ENSGAGG00000012595	RIF1	71	50.782	ENSSFOG00015021539	rif1	99	43.256	Scleropages_formosus
ENSGAGG00000012595	RIF1	62	60.000	ENSSMAG00000011704	rif1	60	51.913	Scophthalmus_maximus
ENSGAGG00000012595	RIF1	67	52.479	ENSSDUG00000015632	rif1	67	52.736	Seriola_dumerili
ENSGAGG00000012595	RIF1	67	51.744	ENSSLDG00000019531	rif1	65	51.231	Seriola_lalandi_dorsalis
ENSGAGG00000012595	RIF1	98	78.320	ENSSPUG00000003062	RIF1	99	78.049	Sphenodon_punctatus
ENSGAGG00000012595	RIF1	57	59.635	ENSSPAG00000018359	rif1	76	59.635	Stegastes_partitus
ENSGAGG00000012595	RIF1	97	69.299	ENSSSCG00000016395	RIF1	90	68.421	Sus_scrofa
ENSGAGG00000012595	RIF1	53	76.529	ENSTGUG00000016761	RIF1	100	77.093	Taeniopygia_guttata
ENSGAGG00000012595	RIF1	75	50.683	ENSTRUG00000015808	rif1	73	49.646	Takifugu_rubripes
ENSGAGG00000012595	RIF1	71	47.686	ENSTNIG00000011538	rif1	69	48.857	Tetraodon_nigroviridis
ENSGAGG00000012595	RIF1	78	68.966	ENSTBEG00000016082	RIF1	71	68.519	Tupaia_belangeri
ENSGAGG00000012595	RIF1	98	72.973	ENSTTRG00000011190	RIF1	89	71.856	Tursiops_truncatus
ENSGAGG00000012595	RIF1	90	66.844	ENSUAMG00000026385	RIF1	87	66.313	Ursus_americanus
ENSGAGG00000012595	RIF1	100	66.578	ENSUMAG00000000337	RIF1	78	67.797	Ursus_maritimus
ENSGAGG00000012595	RIF1	98	70.871	ENSVPAG00000002162	RIF1	88	69.670	Vicugna_pacos
ENSGAGG00000012595	RIF1	98	72.156	ENSVVUG00000011293	RIF1	89	70.958	Vulpes_vulpes
ENSGAGG00000012595	RIF1	99	62.432	ENSXETG00000004530	rif1	89	62.228	Xenopus_tropicalis
ENSGAGG00000012595	RIF1	76	47.759	ENSXMAG00000000506	rif1	66	51.109	Xiphophorus_maculatus