EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAGG00000012945 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Gopherus_agassizii
Status: putative
Strand: Plus strand
Length: 330 bases
Position: chrPPEB01002583.1:69098-69427
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAGP00000017405	LSM	PF01423.22	3.4e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAGT00000019854	-	330	-	ENSGAGP00000017405	109 (aa)	-	-

Gene Model

Click here to download ENSGAGG00000012945's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAGG00000012945's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAGG00000012945	-	63	84.058	ENSGAGG00000014132	-	81	76.119
ENSGAGG00000012945	-	61	46.970	ENSGAGG00000020980	LSM6	74	49.153
ENSGAGG00000012945	-	53	89.655	ENSGAGG00000011163	-	100	89.655
ENSGAGG00000012945	-	73	85.000	ENSGAGG00000020974	-	66	87.179
ENSGAGG00000012945	-	75	84.146	ENSGAGG00000022991	-	84	88.889

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAGG00000012945	-	69	94.667	ENSG00000139343	SNRPF	86	93.243	Homo_sapiens
ENSGAGG00000012945	-	68	91.892	ENSAPOG00000003377	snrpf	58	90.541	Acanthochromis_polyacanthus
ENSGAGG00000012945	-	68	94.595	ENSAMEG00000002166	-	87	93.243	Ailuropoda_melanoleuca
ENSGAGG00000012945	-	70	86.842	ENSAMEG00000018718	-	86	85.135	Ailuropoda_melanoleuca
ENSGAGG00000012945	-	67	91.781	ENSACIG00000013216	snrpf	87	90.541	Amphilophus_citrinellus
ENSGAGG00000012945	-	67	91.781	ENSAOCG00000015108	snrpf	87	90.541	Amphiprion_ocellaris
ENSGAGG00000012945	-	67	91.781	ENSAPEG00000022022	snrpf	87	90.541	Amphiprion_percula
ENSGAGG00000012945	-	67	91.781	ENSATEG00000022625	snrpf	80	90.541	Anabas_testudineus
ENSGAGG00000012945	-	68	93.243	ENSACAG00000014073	SNRPF	85	91.892	Anolis_carolinensis
ENSGAGG00000012945	-	69	94.667	ENSANAG00000032845	SNRPF	86	93.243	Aotus_nancymaae
ENSGAGG00000012945	-	80	75.862	ENSANAG00000020297	-	68	86.486	Aotus_nancymaae
ENSGAGG00000012945	-	69	64.000	ENSANAG00000025860	-	82	64.384	Aotus_nancymaae
ENSGAGG00000012945	-	67	91.781	ENSACLG00000016066	snrpf	87	90.541	Astatotilapia_calliptera
ENSGAGG00000012945	-	69	89.333	ENSAMXG00000007421	snrpf	86	87.838	Astyanax_mexicanus
ENSGAGG00000012945	-	74	86.420	ENSBTAG00000050012	-	83	89.552	Bos_taurus
ENSGAGG00000012945	-	69	94.667	ENSBTAG00000016271	SNRPF	86	93.243	Bos_taurus
ENSGAGG00000012945	-	69	68.000	WBGene00004918	snr-5	78	68.182	Caenorhabditis_elegans
ENSGAGG00000012945	-	69	94.667	ENSCJAG00000002705	-	86	93.243	Callithrix_jacchus
ENSGAGG00000012945	-	67	86.301	ENSCAFG00000031151	-	86	89.189	Canis_familiaris
ENSGAGG00000012945	-	87	81.053	ENSCAFG00000006395	-	91	80.189	Canis_familiaris
ENSGAGG00000012945	-	67	89.041	ENSCAFG00020013161	-	70	89.394	Canis_lupus_dingo
ENSGAGG00000012945	-	67	86.301	ENSCAFG00020010823	-	86	89.189	Canis_lupus_dingo
ENSGAGG00000012945	-	69	81.333	ENSTSYG00000030635	-	86	81.081	Carlito_syrichta
ENSGAGG00000012945	-	83	80.435	ENSTSYG00000031636	-	60	90.141	Carlito_syrichta
ENSGAGG00000012945	-	69	88.158	ENSTSYG00000036502	-	86	86.667	Carlito_syrichta
ENSGAGG00000012945	-	68	94.595	ENSCAPG00000007242	SNRPF	87	93.243	Cavia_aperea
ENSGAGG00000012945	-	69	94.667	ENSCPOG00000013898	SNRPF	86	93.243	Cavia_porcellus
ENSGAGG00000012945	-	78	80.460	ENSCCAG00000033627	-	58	85.135	Cebus_capucinus
ENSGAGG00000012945	-	69	94.667	ENSCCAG00000037378	-	86	93.243	Cebus_capucinus
ENSGAGG00000012945	-	67	94.521	ENSCCAG00000017356	-	86	93.243	Cebus_capucinus
ENSGAGG00000012945	-	69	94.667	ENSCLAG00000007200	SNRPF	86	93.243	Chinchilla_lanigera
ENSGAGG00000012945	-	71	94.805	ENSCSAG00000003602	-	72	92.045	Chlorocebus_sabaeus
ENSGAGG00000012945	-	59	95.312	ENSCHOG00000009392	SNRPF	81	98.077	Choloepus_hoffmanni
ENSGAGG00000012945	-	77	84.524	ENSCPBG00000001985	-	86	86.111	Chrysemys_picta_bellii
ENSGAGG00000012945	-	76	91.566	ENSCPBG00000024287	-	58	94.444	Chrysemys_picta_bellii
ENSGAGG00000012945	-	69	89.333	ENSCPBG00000006227	-	86	86.486	Chrysemys_picta_bellii
ENSGAGG00000012945	-	77	82.558	ENSCPBG00000026463	-	86	83.784	Chrysemys_picta_bellii
ENSGAGG00000012945	-	79	82.955	ENSCSAVG00000007498	-	84	89.189	Ciona_savignyi
ENSGAGG00000012945	-	69	86.667	ENSCGRG00001008965	-	57	86.486	Cricetulus_griseus_chok1gshd
ENSGAGG00000012945	-	69	94.667	ENSCGRG00001017100	-	86	93.243	Cricetulus_griseus_chok1gshd
ENSGAGG00000012945	-	72	86.076	ENSCGRG00000018878	-	84	88.060	Cricetulus_griseus_crigri
ENSGAGG00000012945	-	69	94.667	ENSCGRG00000000336	-	86	93.243	Cricetulus_griseus_crigri
ENSGAGG00000012945	-	69	90.667	ENSCSEG00000004748	snrpf	86	89.189	Cynoglossus_semilaevis
ENSGAGG00000012945	-	68	91.892	ENSCVAG00000000397	snrpf	59	90.541	Cyprinodon_variegatus
ENSGAGG00000012945	-	69	89.610	ENSDARG00000105037	snrpf	86	88.158	Danio_rerio
ENSGAGG00000012945	-	71	92.208	ENSDNOG00000048989	-	79	89.773	Dasypus_novemcinctus
ENSGAGG00000012945	-	71	93.506	ENSDNOG00000043775	-	56	90.909	Dasypus_novemcinctus
ENSGAGG00000012945	-	71	79.221	ENSDNOG00000049373	-	77	76.136	Dasypus_novemcinctus
ENSGAGG00000012945	-	54	94.915	ENSDORG00000029740	-	85	91.429	Dipodomys_ordii
ENSGAGG00000012945	-	66	83.333	ENSDORG00000025351	-	83	86.667	Dipodomys_ordii
ENSGAGG00000012945	-	73	74.390	FBgn0000426	SmF	84	74.324	Drosophila_melanogaster
ENSGAGG00000012945	-	69	94.667	ENSETEG00000001558	-	86	93.243	Echinops_telfairi
ENSGAGG00000012945	-	69	77.632	ENSEBUG00000001793	-	73	77.941	Eptatretus_burgeri
ENSGAGG00000012945	-	71	93.506	ENSECAG00000019817	SNRPF	72	90.909	Equus_caballus
ENSGAGG00000012945	-	68	94.595	ENSEEUG00000013509	SNRPF	87	93.243	Erinaceus_europaeus
ENSGAGG00000012945	-	69	89.333	ENSELUG00000003121	RUXF	86	87.838	Esox_lucius
ENSGAGG00000012945	-	77	86.047	ENSELUG00000007737	RUXF	85	86.486	Esox_lucius
ENSGAGG00000012945	-	69	70.667	ENSFCAG00000021942	-	85	71.622	Felis_catus
ENSGAGG00000012945	-	77	73.256	ENSFCAG00000031148	-	79	73.256	Felis_catus
ENSGAGG00000012945	-	69	94.667	ENSFCAG00000029966	-	86	93.243	Felis_catus
ENSGAGG00000012945	-	68	94.595	ENSFALG00000010799	SNRPF	86	93.243	Ficedula_albicollis
ENSGAGG00000012945	-	69	94.667	ENSFDAG00000002831	-	86	93.243	Fukomys_damarensis
ENSGAGG00000012945	-	72	88.462	ENSFHEG00000003240	snrpf	78	86.517	Fundulus_heteroclitus
ENSGAGG00000012945	-	68	91.892	ENSGMOG00000007741	snrpf	87	90.541	Gadus_morhua
ENSGAGG00000012945	-	69	94.667	ENSGALG00000011409	SNRPF	86	93.243	Gallus_gallus
ENSGAGG00000012945	-	67	91.781	ENSGAFG00000016187	snrpf	85	90.541	Gambusia_affinis
ENSGAGG00000012945	-	68	90.541	ENSGACG00000020055	snrpf	87	89.189	Gasterosteus_aculeatus
ENSGAGG00000012945	-	75	75.000	ENSGGOG00000039936	-	79	76.389	Gorilla_gorilla
ENSGAGG00000012945	-	69	94.667	ENSGGOG00000001127	-	87	93.243	Gorilla_gorilla
ENSGAGG00000012945	-	72	69.620	ENSGGOG00000039564	-	79	71.642	Gorilla_gorilla
ENSGAGG00000012945	-	69	94.667	ENSHGLG00000009108	SNRPF	86	93.243	Heterocephalus_glaber_female
ENSGAGG00000012945	-	69	93.333	ENSHGLG00000021172	-	86	91.892	Heterocephalus_glaber_female
ENSGAGG00000012945	-	68	94.595	ENSHGLG00100008103	-	87	93.243	Heterocephalus_glaber_male
ENSGAGG00000012945	-	69	93.333	ENSHGLG00100019596	-	86	91.892	Heterocephalus_glaber_male
ENSGAGG00000012945	-	69	92.000	ENSIPUG00000018994	snrpf	87	90.541	Ictalurus_punctatus
ENSGAGG00000012945	-	69	94.667	ENSSTOG00000010434	-	86	93.243	Ictidomys_tridecemlineatus
ENSGAGG00000012945	-	77	80.952	ENSJJAG00000004558	-	86	83.333	Jaculus_jaculus
ENSGAGG00000012945	-	77	82.143	ENSJJAG00000010502	-	86	83.333	Jaculus_jaculus
ENSGAGG00000012945	-	69	94.667	ENSJJAG00000011272	-	86	93.243	Jaculus_jaculus
ENSGAGG00000012945	-	60	92.308	ENSJJAG00000004828	-	100	92.308	Jaculus_jaculus
ENSGAGG00000012945	-	69	90.667	ENSKMAG00000013566	snrpf	86	90.541	Kryptolebias_marmoratus
ENSGAGG00000012945	-	69	90.667	ENSLBEG00000008800	snrpf	86	89.189	Labrus_bergylta
ENSGAGG00000012945	-	72	89.744	ENSLACG00000002456	-	63	93.243	Latimeria_chalumnae
ENSGAGG00000012945	-	69	89.333	ENSLOCG00000015744	snrpf	86	87.838	Lepisosteus_oculatus
ENSGAGG00000012945	-	68	94.595	ENSLAFG00000017426	SNRPF	86	93.243	Loxodonta_africana
ENSGAGG00000012945	-	67	90.411	ENSMAMG00000016593	snrpf	87	89.189	Mastacembelus_armatus
ENSGAGG00000012945	-	67	91.781	ENSMZEG00005014701	snrpf	87	90.541	Maylandia_zebra
ENSGAGG00000012945	-	87	78.947	ENSMGAG00000011453	-	67	93.243	Meleagris_gallopavo
ENSGAGG00000012945	-	58	96.825	ENSMAUG00000016909	-	100	93.243	Mesocricetus_auratus
ENSGAGG00000012945	-	54	91.525	ENSMAUG00000010289	-	76	91.525	Mesocricetus_auratus
ENSGAGG00000012945	-	69	89.333	ENSMAUG00000008799	-	86	87.838	Mesocricetus_auratus
ENSGAGG00000012945	-	58	96.825	ENSMAUG00000019737	-	100	93.243	Mesocricetus_auratus
ENSGAGG00000012945	-	71	92.208	ENSMICG00000030494	-	70	89.773	Microcebus_murinus
ENSGAGG00000012945	-	69	94.667	ENSMICG00000012153	-	86	93.243	Microcebus_murinus
ENSGAGG00000012945	-	62	79.412	ENSMOCG00000020220	-	92	81.944	Microtus_ochrogaster
ENSGAGG00000012945	-	69	80.000	ENSMOCG00000022166	-	77	81.429	Microtus_ochrogaster
ENSGAGG00000012945	-	69	94.667	ENSMOCG00000020437	Snrpf	86	93.243	Microtus_ochrogaster
ENSGAGG00000012945	-	68	90.541	ENSMMOG00000007127	snrpf	87	89.189	Mola_mola
ENSGAGG00000012945	-	71	94.805	ENSMODG00000008091	SNRPF	77	92.045	Monodelphis_domestica
ENSGAGG00000012945	-	67	91.781	ENSMALG00000012328	snrpf	87	90.541	Monopterus_albus
ENSGAGG00000012945	-	69	94.667	MGP_CAROLIEiJ_G0015735	-	86	93.243	Mus_caroli
ENSGAGG00000012945	-	69	94.667	ENSMUSG00000020018	Snrpf	86	93.243	Mus_musculus
ENSGAGG00000012945	-	69	94.667	MGP_PahariEiJ_G0031350	Snrpf	86	93.243	Mus_pahari
ENSGAGG00000012945	-	69	94.667	MGP_SPRETEiJ_G0016553	Snrpf	86	93.243	Mus_spretus
ENSGAGG00000012945	-	71	92.208	ENSMPUG00000007176	-	66	93.243	Mustela_putorius_furo
ENSGAGG00000012945	-	87	81.053	ENSMLUG00000029201	-	95	80.189	Myotis_lucifugus
ENSGAGG00000012945	-	87	81.053	ENSMLUG00000026149	-	95	80.189	Myotis_lucifugus
ENSGAGG00000012945	-	87	81.053	ENSMLUG00000027932	-	95	80.189	Myotis_lucifugus
ENSGAGG00000012945	-	82	73.626	ENSMLUG00000026269	-	70	75.676	Myotis_lucifugus
ENSGAGG00000012945	-	68	94.595	ENSMLUG00000013577	-	87	93.243	Myotis_lucifugus
ENSGAGG00000012945	-	58	88.889	ENSNGAG00000005851	-	74	88.889	Nannospalax_galili
ENSGAGG00000012945	-	69	94.667	ENSNGAG00000024292	-	86	93.243	Nannospalax_galili
ENSGAGG00000012945	-	81	81.818	ENSNBRG00000011682	snrpf	76	90.541	Neolamprologus_brichardi
ENSGAGG00000012945	-	68	66.216	ENSMEUG00000000671	SNRPF	87	64.865	Notamacropus_eugenii
ENSGAGG00000012945	-	69	94.667	ENSODEG00000010328	-	87	93.243	Octodon_degus
ENSGAGG00000012945	-	69	93.333	ENSOCUG00000010925	SNRPF	65	93.243	Oryctolagus_cuniculus
ENSGAGG00000012945	-	68	89.189	ENSORLG00020008216	snrpf	87	87.838	Oryzias_latipes_hni
ENSGAGG00000012945	-	68	89.189	ENSORLG00015007418	snrpf	87	87.838	Oryzias_latipes_hsok
ENSGAGG00000012945	-	67	90.411	ENSOMEG00000003018	snrpf	87	89.189	Oryzias_melastigma
ENSGAGG00000012945	-	69	93.333	ENSOGAG00000030323	-	86	93.243	Otolemur_garnettii
ENSGAGG00000012945	-	71	93.506	ENSOARG00000011853	-	77	90.909	Ovis_aries
ENSGAGG00000012945	-	75	75.000	ENSPPAG00000037544	-	79	77.778	Pan_paniscus
ENSGAGG00000012945	-	72	70.886	ENSPPAG00000037479	-	80	73.134	Pan_paniscus
ENSGAGG00000012945	-	69	94.667	ENSPPRG00000005875	-	86	93.243	Panthera_pardus
ENSGAGG00000012945	-	75	72.619	ENSPPRG00000007449	-	73	73.611	Panthera_pardus
ENSGAGG00000012945	-	75	73.810	ENSPTIG00000005117	-	86	75.000	Panthera_tigris_altaica
ENSGAGG00000012945	-	69	94.667	ENSPTIG00000007520	SNRPF	86	93.243	Panthera_tigris_altaica
ENSGAGG00000012945	-	72	69.620	ENSPTRG00000047717	-	80	71.642	Pan_troglodytes
ENSGAGG00000012945	-	75	75.000	ENSPTRG00000043814	-	79	77.778	Pan_troglodytes
ENSGAGG00000012945	-	68	91.892	ENSPKIG00000014784	snrpf	81	90.541	Paramormyrops_kingsleyae
ENSGAGG00000012945	-	68	94.595	ENSPSIG00000016462	SNRPF	86	93.243	Pelodiscus_sinensis
ENSGAGG00000012945	-	68	90.541	ENSPMGG00000023548	snrpf	87	89.189	Periophthalmus_magnuspinnatus
ENSGAGG00000012945	-	69	94.667	ENSPEMG00000023326	Snrpf	86	93.243	Peromyscus_maniculatus_bairdii
ENSGAGG00000012945	-	67	91.781	ENSPLAG00000023932	snrpf	87	90.541	Poecilia_latipinna
ENSGAGG00000012945	-	67	91.781	ENSPMEG00000003377	snrpf	87	90.541	Poecilia_mexicana
ENSGAGG00000012945	-	69	92.105	ENSPREG00000022635	snrpf	85	90.541	Poecilia_reticulata
ENSGAGG00000012945	-	69	94.667	ENSPPYG00000004847	-	86	93.243	Pongo_abelii
ENSGAGG00000012945	-	69	94.667	ENSPCOG00000023833	-	86	93.243	Propithecus_coquereli
ENSGAGG00000012945	-	69	94.667	ENSPVAG00000009036	SNRPF	86	93.243	Pteropus_vampyrus
ENSGAGG00000012945	-	67	91.781	ENSPNYG00000021712	snrpf	87	90.541	Pundamilia_nyererei
ENSGAGG00000012945	-	67	90.411	ENSPNAG00000019117	snrpf	87	89.189	Pygocentrus_nattereri
ENSGAGG00000012945	-	69	94.667	ENSRNOG00000005556	Snrpf	86	93.243	Rattus_norvegicus
ENSGAGG00000012945	-	69	92.000	ENSRBIG00000030414	-	86	89.189	Rhinopithecus_bieti
ENSGAGG00000012945	-	69	92.000	ENSRROG00000021975	-	86	89.189	Rhinopithecus_roxellana
ENSGAGG00000012945	-	63	54.286	YPR182W	SMX3	72	53.226	Saccharomyces_cerevisiae
ENSGAGG00000012945	-	69	94.667	ENSSBOG00000012868	-	86	93.243	Saimiri_boliviensis_boliviensis
ENSGAGG00000012945	-	69	94.667	ENSSBOG00000036179	-	86	93.243	Saimiri_boliviensis_boliviensis
ENSGAGG00000012945	-	69	78.205	ENSSBOG00000027638	-	85	81.081	Saimiri_boliviensis_boliviensis
ENSGAGG00000012945	-	69	80.000	ENSSBOG00000032297	-	85	79.730	Saimiri_boliviensis_boliviensis
ENSGAGG00000012945	-	71	93.506	ENSSHAG00000012294	SNRPF	79	90.909	Sarcophilus_harrisii
ENSGAGG00000012945	-	59	92.188	ENSSFOG00015021523	snrpf	79	94.340	Scleropages_formosus
ENSGAGG00000012945	-	69	89.333	ENSSMAG00000005533	snrpf	85	89.189	Scophthalmus_maximus
ENSGAGG00000012945	-	60	92.308	ENSSDUG00000016283	snrpf	63	94.340	Seriola_dumerili
ENSGAGG00000012945	-	73	71.250	ENSSLDG00000003885	-	83	75.000	Seriola_lalandi_dorsalis
ENSGAGG00000012945	-	69	90.667	ENSSLDG00000005119	snrpf	86	90.541	Seriola_lalandi_dorsalis
ENSGAGG00000012945	-	67	94.521	ENSSPUG00000014590	-	87	93.243	Sphenodon_punctatus
ENSGAGG00000012945	-	68	91.892	ENSSPAG00000003283	snrpf	84	90.541	Stegastes_partitus
ENSGAGG00000012945	-	69	94.667	ENSSSCG00000000895	SNRPF	86	93.243	Sus_scrofa
ENSGAGG00000012945	-	53	91.379	ENSTRUG00000014956	snrpf	100	88.406	Takifugu_rubripes
ENSGAGG00000012945	-	69	90.667	ENSTNIG00000012672	snrpf	86	89.189	Tetraodon_nigroviridis
ENSGAGG00000012945	-	69	66.667	ENSTTRG00000006070	SNRPF	86	64.865	Tursiops_truncatus
ENSGAGG00000012945	-	69	94.667	ENSUAMG00000008176	-	86	93.243	Ursus_americanus
ENSGAGG00000012945	-	77	84.706	ENSUAMG00000001101	-	86	83.562	Ursus_americanus
ENSGAGG00000012945	-	69	94.667	ENSUMAG00000003528	-	86	93.243	Ursus_maritimus
ENSGAGG00000012945	-	69	88.000	ENSUMAG00000006177	-	86	84.932	Ursus_maritimus
ENSGAGG00000012945	-	69	94.667	ENSVPAG00000008712	-	86	93.243	Vicugna_pacos
ENSGAGG00000012945	-	72	87.179	ENSVVUG00000023821	-	85	87.879	Vulpes_vulpes
ENSGAGG00000012945	-	68	68.421	ENSXETG00000021630	snrpf	87	67.105	Xenopus_tropicalis
ENSGAGG00000012945	-	69	90.789	ENSXCOG00000013860	snrpf	85	90.541	Xiphophorus_couchianus
ENSGAGG00000012945	-	67	91.781	ENSXMAG00000015448	snrpf	87	90.541	Xiphophorus_maculatus