EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAGG00000013164 (Gene tree)
Gene ID: -
Gene Symbol: CHD3
Alias: Mi-2a|Mi2-ALPHA|ZFH
Full Name: chromodomain helicase DNA binding protein 3
Gene Type: protein_coding
Species: Gopherus_agassizii
Status: putative
Strand: Plus strand
Length: 22745 bases
Position: chrPPEB01013005.1:645-23389
Accession: 1918
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAGP00000020970	ResIII	PF04851.15	2.2e-08	1	1
ENSGAGP00000020378	ResIII	PF04851.15	2.3e-08	1	1
ENSGAGP00000021416	ResIII	PF04851.15	2.3e-08	1	1
ENSGAGP00000021278	ResIII	PF04851.15	2.3e-08	1	1
ENSGAGP00000021408	ResIII	PF04851.15	2.3e-08	1	1
ENSGAGP00000021212	ResIII	PF04851.15	2.3e-08	1	1
ENSGAGP00000021517	ResIII	PF04851.15	2.5e-08	1	1
ENSGAGP00000019368	ResIII	PF04851.15	2.5e-08	1	1
ENSGAGP00000021435	ResIII	PF04851.15	3.9e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAGT00000023886	CHD3-203	4152	-	ENSGAGP00000020970	1383 (aa)	-	-
ENSGAGT00000024505	CHD3-209	4233	-	ENSGAGP00000021517	1411 (aa)	-	-
ENSGAGT00000024158	CHD3-204	4482	-	ENSGAGP00000021212	1494 (aa)	-	-
ENSGAGT00000024382	CHD3-206	4497	-	ENSGAGP00000021408	1499 (aa)	-	-
ENSGAGT00000024392	CHD3-207	4437	-	ENSGAGP00000021416	1479 (aa)	-	-
ENSGAGT00000024417	CHD3-208	4431	-	ENSGAGP00000021435	1476 (aa)	-	-
ENSGAGT00000023219	CHD3-202	4203	-	ENSGAGP00000020378	1401 (aa)	-	-
ENSGAGT00000022062	CHD3-201	4206	-	ENSGAGP00000019368	1402 (aa)	-	-
ENSGAGT00000024230	CHD3-205	4467	-	ENSGAGP00000021278	1488 (aa)	-	-

Gene Model

Click here to download ENSGAGG00000013164's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAGG00000013164's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAGG00000013164	CHD3	92	81.132	ENSGAGG00000001416	-	69	81.132
ENSGAGG00000013164	CHD3	54	42.199	ENSGAGG00000013176	-	85	42.159
ENSGAGG00000013164	CHD3	93	83.333	ENSGAGG00000001590	CHD5	82	77.976

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAGG00000013164	CHD3	98	87.101	ENSG00000170004	CHD3	76	95.833	Homo_sapiens
ENSGAGG00000013164	CHD3	99	76.281	ENSAPOG00000005614	chd3	85	76.847	Acanthochromis_polyacanthus
ENSGAGG00000013164	CHD3	69	95.341	ENSAMEG00000003025	-	82	88.104	Ailuropoda_melanoleuca
ENSGAGG00000013164	CHD3	99	76.454	ENSACIG00000019671	chd3	86	83.268	Amphilophus_citrinellus
ENSGAGG00000013164	CHD3	99	76.766	ENSAOCG00000023784	chd3	86	78.700	Amphiprion_ocellaris
ENSGAGG00000013164	CHD3	97	77.752	ENSAPEG00000006341	chd3	67	82.492	Amphiprion_percula
ENSGAGG00000013164	CHD3	99	76.475	ENSATEG00000000848	chd3	88	74.423	Anabas_testudineus
ENSGAGG00000013164	CHD3	98	86.039	ENSACAG00000004276	CHD3	72	86.581	Anolis_carolinensis
ENSGAGG00000013164	CHD3	98	86.409	ENSANAG00000034323	CHD3	79	85.667	Aotus_nancymaae
ENSGAGG00000013164	CHD3	96	76.557	ENSACLG00000009222	chd3	81	79.876	Astatotilapia_calliptera
ENSGAGG00000013164	CHD3	97	86.499	ENSBTAG00000014377	CHD3	75	86.364	Bos_taurus
ENSGAGG00000013164	CHD3	98	87.101	ENSCJAG00000014766	CHD3	74	87.101	Callithrix_jacchus
ENSGAGG00000013164	CHD3	98	86.202	ENSCAFG00000016859	CHD3	75	85.294	Canis_familiaris
ENSGAGG00000013164	CHD3	98	86.753	ENSCAFG00020007422	CHD3	82	85.294	Canis_lupus_dingo
ENSGAGG00000013164	CHD3	98	86.181	ENSCHIG00000016737	CHD3	76	85.533	Capra_hircus
ENSGAGG00000013164	CHD3	98	87.033	ENSTSYG00000035658	CHD3	81	82.956	Carlito_syrichta
ENSGAGG00000013164	CHD3	98	82.632	ENSCAPG00000014864	CHD3	74	82.298	Cavia_aperea
ENSGAGG00000013164	CHD3	98	86.257	ENSCPOG00000022653	CHD3	75	85.695	Cavia_porcellus
ENSGAGG00000013164	CHD3	98	87.169	ENSCCAG00000034792	CHD3	75	85.733	Cebus_capucinus
ENSGAGG00000013164	CHD3	98	87.101	ENSCATG00000041717	CHD3	74	87.101	Cercocebus_atys
ENSGAGG00000013164	CHD3	98	87.084	ENSCLAG00000010523	CHD3	76	86.948	Chinchilla_lanigera
ENSGAGG00000013164	CHD3	99	86.189	ENSCSAG00000011122	CHD3	75	86.527	Chlorocebus_sabaeus
ENSGAGG00000013164	CHD3	97	96.687	ENSCPBG00000011966	CHD3	87	96.687	Chrysemys_picta_bellii
ENSGAGG00000013164	CHD3	98	87.101	ENSCANG00000037641	CHD3	81	82.272	Colobus_angolensis_palliatus
ENSGAGG00000013164	CHD3	98	86.830	ENSCGRG00001011306	Chd3	76	86.490	Cricetulus_griseus_chok1gshd
ENSGAGG00000013164	CHD3	98	83.209	ENSCGRG00000007878	Chd3	81	82.665	Cricetulus_griseus_crigri
ENSGAGG00000013164	CHD3	90	88.679	ENSCSEG00000004489	chd3	74	88.679	Cynoglossus_semilaevis
ENSGAGG00000013164	CHD3	96	77.872	ENSCVAG00000007293	chd3	80	75.368	Cyprinodon_variegatus
ENSGAGG00000013164	CHD3	97	79.674	ENSDARG00000021405	chd3	81	76.860	Danio_rerio
ENSGAGG00000013164	CHD3	88	87.785	ENSDNOG00000047846	CHD3	60	94.798	Dasypus_novemcinctus
ENSGAGG00000013164	CHD3	98	86.626	ENSDORG00000010713	Chd3	76	86.626	Dipodomys_ordii
ENSGAGG00000013164	CHD3	98	81.944	ENSETEG00000017733	CHD3	78	80.749	Echinops_telfairi
ENSGAGG00000013164	CHD3	81	77.778	ENSEBUG00000008310	chd3	86	69.497	Eptatretus_burgeri
ENSGAGG00000013164	CHD3	98	86.409	ENSEASG00005019360	CHD3	82	85.762	Equus_asinus_asinus
ENSGAGG00000013164	CHD3	98	85.762	ENSECAG00000010051	CHD3	82	85.762	Equus_caballus
ENSGAGG00000013164	CHD3	98	79.151	ENSEEUG00000015205	CHD3	76	78.916	Erinaceus_europaeus
ENSGAGG00000013164	CHD3	99	71.693	ENSELUG00000019499	chd3	85	87.179	Esox_lucius
ENSGAGG00000013164	CHD3	98	86.277	ENSFCAG00000009629	CHD3	73	85.571	Felis_catus
ENSGAGG00000013164	CHD3	98	86.257	ENSFDAG00000008220	CHD3	75	85.552	Fukomys_damarensis
ENSGAGG00000013164	CHD3	92	78.362	ENSGMOG00000013599	chd3	70	80.691	Gadus_morhua
ENSGAGG00000013164	CHD3	69	77.329	ENSGAFG00000004055	chd3	82	81.723	Gambusia_affinis
ENSGAGG00000013164	CHD3	97	74.716	ENSGACG00000019275	chd3	78	74.079	Gasterosteus_aculeatus
ENSGAGG00000013164	CHD3	98	86.965	ENSGGOG00000013496	CHD3	81	82.075	Gorilla_gorilla
ENSGAGG00000013164	CHD3	98	86.965	ENSHGLG00000012017	CHD3	75	85.695	Heterocephalus_glaber_female
ENSGAGG00000013164	CHD3	79	95.980	ENSHGLG00100013902	CHD3	68	95.980	Heterocephalus_glaber_male
ENSGAGG00000013164	CHD3	97	76.395	ENSHCOG00000010170	chd3	71	79.318	Hippocampus_comes
ENSGAGG00000013164	CHD3	99	77.016	ENSIPUG00000003271	chd3	83	76.536	Ictalurus_punctatus
ENSGAGG00000013164	CHD3	98	87.152	ENSSTOG00000025907	CHD3	76	87.152	Ictidomys_tridecemlineatus
ENSGAGG00000013164	CHD3	98	86.626	ENSJJAG00000017633	Chd3	76	86.490	Jaculus_jaculus
ENSGAGG00000013164	CHD3	88	86.047	ENSKMAG00000019292	chd3	76	76.812	Kryptolebias_marmoratus
ENSGAGG00000013164	CHD3	99	73.149	ENSLBEG00000028485	chd3	76	72.030	Labrus_bergylta
ENSGAGG00000013164	CHD3	97	78.003	ENSLACG00000008031	CHD3	77	76.402	Latimeria_chalumnae
ENSGAGG00000013164	CHD3	97	84.729	ENSLOCG00000013965	chd3	70	84.615	Lepisosteus_oculatus
ENSGAGG00000013164	CHD3	89	93.821	ENSLAFG00000000572	CHD3	75	87.110	Loxodonta_africana
ENSGAGG00000013164	CHD3	98	87.033	ENSMFAG00000020113	CHD3	81	83.467	Macaca_fascicularis
ENSGAGG00000013164	CHD3	99	84.274	ENSMMUG00000022221	CHD3	75	84.806	Macaca_mulatta
ENSGAGG00000013164	CHD3	98	87.101	ENSMNEG00000001728	CHD3	81	85.000	Macaca_nemestrina
ENSGAGG00000013164	CHD3	98	87.101	ENSMLEG00000032249	CHD3	74	87.101	Mandrillus_leucophaeus
ENSGAGG00000013164	CHD3	91	83.715	ENSMAMG00000000564	chd3	83	82.812	Mastacembelus_armatus
ENSGAGG00000013164	CHD3	98	86.490	ENSMAUG00000013873	Chd3	82	82.157	Mesocricetus_auratus
ENSGAGG00000013164	CHD3	98	86.917	ENSMICG00000008741	CHD3	73	86.039	Microcebus_murinus
ENSGAGG00000013164	CHD3	98	86.897	ENSMOCG00000004848	Chd3	76	86.558	Microtus_ochrogaster
ENSGAGG00000013164	CHD3	95	84.483	ENSMMOG00000012699	chd3	73	88.889	Mola_mola
ENSGAGG00000013164	CHD3	97	87.560	ENSMODG00000007509	CHD3	80	87.638	Monodelphis_domestica
ENSGAGG00000013164	CHD3	98	86.753	MGP_CAROLIEiJ_G0016564	Chd3	77	86.481	Mus_caroli
ENSGAGG00000013164	CHD3	98	86.694	ENSMUSG00000018474	Chd3	77	86.490	Mus_musculus
ENSGAGG00000013164	CHD3	98	87.101	MGP_PahariEiJ_G0017695	Chd3	77	86.762	Mus_pahari
ENSGAGG00000013164	CHD3	98	86.762	MGP_SPRETEiJ_G0017400	Chd3	77	86.558	Mus_spretus
ENSGAGG00000013164	CHD3	97	87.109	ENSMPUG00000008861	CHD3	87	85.590	Mustela_putorius_furo
ENSGAGG00000013164	CHD3	98	85.791	ENSMLUG00000014643	-	75	85.657	Myotis_lucifugus
ENSGAGG00000013164	CHD3	98	86.105	ENSNGAG00000000773	Chd3	74	85.829	Nannospalax_galili
ENSGAGG00000013164	CHD3	95	81.545	ENSNBRG00000000636	chd3	82	79.709	Neolamprologus_brichardi
ENSGAGG00000013164	CHD3	95	90.000	ENSNLEG00000009770	CHD3	76	83.910	Nomascus_leucogenys
ENSGAGG00000013164	CHD3	86	81.330	ENSMEUG00000005852	CHD3	63	84.599	Notamacropus_eugenii
ENSGAGG00000013164	CHD3	94	90.288	ENSOPRG00000011069	CHD3	80	84.980	Ochotona_princeps
ENSGAGG00000013164	CHD3	94	90.954	ENSODEG00000017785	CHD3	75	85.762	Octodon_degus
ENSGAGG00000013164	CHD3	93	82.043	ENSONIG00000009292	chd3	77	76.944	Oreochromis_niloticus
ENSGAGG00000013164	CHD3	98	85.075	ENSOCUG00000029299	CHD3	76	84.309	Oryctolagus_cuniculus
ENSGAGG00000013164	CHD3	96	73.888	ENSORLG00000007107	chd3	83	74.228	Oryzias_latipes
ENSGAGG00000013164	CHD3	63	80.534	ENSORLG00020008387	chd3	82	79.027	Oryzias_latipes_hni
ENSGAGG00000013164	CHD3	97	79.141	ENSOMEG00000013691	chd3	86	79.308	Oryzias_melastigma
ENSGAGG00000013164	CHD3	99	85.704	ENSOGAG00000003216	CHD3	76	85.333	Otolemur_garnettii
ENSGAGG00000013164	CHD3	98	86.291	ENSOARG00000017855	CHD3	75	86.536	Ovis_aries
ENSGAGG00000013164	CHD3	98	84.693	ENSPPAG00000032886	CHD3	81	81.878	Pan_paniscus
ENSGAGG00000013164	CHD3	98	87.024	ENSPPRG00000000626	CHD3	74	86.897	Panthera_pardus
ENSGAGG00000013164	CHD3	98	87.101	ENSPTRG00000008714	CHD3	81	82.272	Pan_troglodytes
ENSGAGG00000013164	CHD3	99	86.005	ENSPANG00000023938	CHD3	81	83.533	Papio_anubis
ENSGAGG00000013164	CHD3	95	86.327	ENSPKIG00000006305	chd3	73	86.327	Paramormyrops_kingsleyae
ENSGAGG00000013164	CHD3	74	94.429	ENSPSIG00000010177	CHD3	98	96.157	Pelodiscus_sinensis
ENSGAGG00000013164	CHD3	98	85.747	ENSPEMG00000014262	Chd3	75	85.077	Peromyscus_maniculatus_bairdii
ENSGAGG00000013164	CHD3	99	86.160	ENSPCIG00000005442	CHD3	81	87.491	Phascolarctos_cinereus
ENSGAGG00000013164	CHD3	95	81.433	ENSPFOG00000012464	chd3	66	82.339	Poecilia_formosa
ENSGAGG00000013164	CHD3	99	72.876	ENSPLAG00000002887	chd3	80	78.223	Poecilia_latipinna
ENSGAGG00000013164	CHD3	60	82.118	ENSPMEG00000016725	chd3	76	82.273	Poecilia_mexicana
ENSGAGG00000013164	CHD3	99	76.349	ENSPREG00000011044	chd3	75	78.318	Poecilia_reticulata
ENSGAGG00000013164	CHD3	98	82.308	ENSPPYG00000007940	CHD3	76	82.207	Pongo_abelii
ENSGAGG00000013164	CHD3	89	94.767	ENSPCAG00000004350	CHD3	64	94.767	Procavia_capensis
ENSGAGG00000013164	CHD3	98	87.373	ENSPCOG00000020952	CHD3	75	86.106	Propithecus_coquereli
ENSGAGG00000013164	CHD3	80	88.930	ENSPVAG00000016344	CHD3	63	89.925	Pteropus_vampyrus
ENSGAGG00000013164	CHD3	94	82.774	ENSPNAG00000020393	chd3	80	83.645	Pygocentrus_nattereri
ENSGAGG00000013164	CHD3	94	90.947	ENSRNOG00000009722	Chd3	81	85.438	Rattus_norvegicus
ENSGAGG00000013164	CHD3	97	85.462	ENSRBIG00000033562	CHD3	82	83.410	Rhinopithecus_bieti
ENSGAGG00000013164	CHD3	98	87.101	ENSRROG00000029554	CHD3	82	83.519	Rhinopithecus_roxellana
ENSGAGG00000013164	CHD3	98	87.169	ENSSBOG00000020719	CHD3	81	85.000	Saimiri_boliviensis_boliviensis
ENSGAGG00000013164	CHD3	98	86.608	ENSSHAG00000014412	CHD3	76	86.472	Sarcophilus_harrisii
ENSGAGG00000013164	CHD3	90	87.017	ENSSFOG00015023123	chd3	82	73.439	Scleropages_formosus
ENSGAGG00000013164	CHD3	95	84.483	ENSSMAG00000006451	chd3	86	78.468	Scophthalmus_maximus
ENSGAGG00000013164	CHD3	59	83.174	ENSSDUG00000005792	chd3	78	83.413	Seriola_dumerili
ENSGAGG00000013164	CHD3	98	76.952	ENSSPAG00000013694	chd3	86	82.353	Stegastes_partitus
ENSGAGG00000013164	CHD3	97	88.000	ENSSSCG00000021363	CHD3	86	86.499	Sus_scrofa
ENSGAGG00000013164	CHD3	91	78.298	ENSTRUG00000014990	chd3	77	80.808	Takifugu_rubripes
ENSGAGG00000013164	CHD3	99	76.308	ENSTNIG00000012998	chd3	77	76.522	Tetraodon_nigroviridis
ENSGAGG00000013164	CHD3	74	96.651	ENSTBEG00000011454	-	62	96.651	Tupaia_belangeri
ENSGAGG00000013164	CHD3	95	89.748	ENSTTRG00000010295	CHD3	73	86.105	Tursiops_truncatus
ENSGAGG00000013164	CHD3	98	84.621	ENSUAMG00000005475	CHD3	82	84.421	Ursus_americanus
ENSGAGG00000013164	CHD3	63	96.904	ENSVPAG00000010794	-	53	96.904	Vicugna_pacos
ENSGAGG00000013164	CHD3	98	86.753	ENSVVUG00000028011	CHD3	78	85.294	Vulpes_vulpes
ENSGAGG00000013164	CHD3	97	75.906	ENSXETG00000012991	chd3	74	75.839	Xenopus_tropicalis
ENSGAGG00000013164	CHD3	64	82.957	ENSXCOG00000000809	chd3	79	83.390	Xiphophorus_couchianus
ENSGAGG00000013164	CHD3	99	75.977	ENSXMAG00000016035	chd3	88	83.150	Xiphophorus_maculatus