EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSGAGG00000013289 (Gene tree)
Gene ID
-
Gene Symbol
PUF60
Alias
FIR|RoBPI|SIAHBP1
Full Name
poly(U) binding splicing factor 60
Gene Type
protein_coding
Species
Gopherus_agassizii
Status
putative
Strand
Minus strand
Length
48417 bases
Position
chrPPEB01007271.1:16716-65132
Accession
17042
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSGAGP00000017916RRM_1PF00076.221.4e-4312
ENSGAGP00000017916RRM_1PF00076.221.4e-4322
ENSGAGP00000017915RRM_1PF00076.221.6e-4312
ENSGAGP00000017915RRM_1PF00076.221.6e-4322
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSGAGT00000020436PUF60-2011990-ENSGAGP00000017915568 (aa)--
ENSGAGT00000020437PUF60-2021939-ENSGAGP00000017916551 (aa)--
Gene Model
Click here to download ENSGAGG00000013289's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSGAGG00000013289's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSGAGG00000013289PUF605836.000ENSGAGG00000011849U2AF28337.255
ENSGAGG00000013289PUF607433.735ENSGAGG00000017672-5033.784
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSGAGG00000013289PUF609397.727ENSG00000179950PUF6010098.256Homo_sapiens
ENSGAGG00000013289PUF609384.774ENSAPOG00000001713puf60b9885.496Acanthochromis_polyacanthus
ENSGAGG00000013289PUF609296.360ENSAMEG00000006406PUF609396.154Ailuropoda_melanoleuca
ENSGAGG00000013289PUF609185.221ENSACIG00000021705puf60b10085.029Amphilophus_citrinellus
ENSGAGG00000013289PUF609177.351ENSACIG00000003263-9977.586Amphilophus_citrinellus
ENSGAGG00000013289PUF609281.369ENSAOCG00000015558-9782.308Amphiprion_ocellaris
ENSGAGG00000013289PUF609384.774ENSAOCG00000005395puf60b10085.988Amphiprion_ocellaris
ENSGAGG00000013289PUF609175.595ENSAPEG00000001836-9976.031Amphiprion_percula
ENSGAGG00000013289PUF609282.353ENSAPEG00000011923puf60b9882.643Amphiprion_percula
ENSGAGG00000013289PUF609285.199ENSATEG00000001730puf60b9885.333Anabas_testudineus
ENSGAGG00000013289PUF609281.061ENSATEG00000006303-9882.184Anabas_testudineus
ENSGAGG00000013289PUF609299.042ENSAPLG00000010150PUF6010099.042Anas_platyrhynchos
ENSGAGG00000013289PUF609395.725ENSACAG00000001645PUF609995.725Anolis_carolinensis
ENSGAGG00000013289PUF609695.580ENSANAG00000018626PUF6010098.256Aotus_nancymaae
ENSGAGG00000013289PUF609185.221ENSACLG00000004462puf60b10085.029Astatotilapia_calliptera
ENSGAGG00000013289PUF609284.673ENSAMXG00000036570puf60a9785.127Astyanax_mexicanus
ENSGAGG00000013289PUF609177.009ENSAMXG00000041030puf60b10074.532Astyanax_mexicanus
ENSGAGG00000013289PUF609397.917ENSBTAG00000037493PUF609998.276Bos_taurus
ENSGAGG00000013289PUF607252.650WBGene00004389rnp-68353.497Caenorhabditis_elegans
ENSGAGG00000013289PUF609397.917ENSCJAG00000021485PUF609997.917Callithrix_jacchus
ENSGAGG00000013289PUF609298.416ENSCAFG00000001400PUF609398.416Canis_familiaris
ENSGAGG00000013289PUF609398.106ENSCAFG00020018754PUF609998.106Canis_lupus_dingo
ENSGAGG00000013289PUF609298.276ENSCHIG00000001618PUF608798.269Capra_hircus
ENSGAGG00000013289PUF609398.295ENSTSYG00000011912PUF6010098.643Carlito_syrichta
ENSGAGG00000013289PUF609292.966ENSCPOG00000014613PUF609492.748Cavia_porcellus
ENSGAGG00000013289PUF609397.727ENSCCAG00000007744PUF609997.727Cebus_capucinus
ENSGAGG00000013289PUF609397.727ENSCATG00000035405PUF609997.727Cercocebus_atys
ENSGAGG00000013289PUF609298.659ENSCLAG00000009154PUF609398.659Chinchilla_lanigera
ENSGAGG00000013289PUF609198.256ENSCSAG00000008878PUF6010098.256Chlorocebus_sabaeus
ENSGAGG00000013289PUF6093100.000ENSCPBG00000005595PUF60100100.000Chrysemys_picta_bellii
ENSGAGG00000013289PUF605763.043ENSCING00000002156-8763.043Ciona_intestinalis
ENSGAGG00000013289PUF609349.259ENSCING00000008436-9849.146Ciona_intestinalis
ENSGAGG00000013289PUF608955.556ENSCSAVG00000001385-10054.701Ciona_savignyi
ENSGAGG00000013289PUF608850.615ENSCSAVG00000004765-9750.308Ciona_savignyi
ENSGAGG00000013289PUF607497.783ENSCANG00000041843PUF6010098.082Colobus_angolensis_palliatus
ENSGAGG00000013289PUF609298.084ENSCGRG00001017442Puf609398.084Cricetulus_griseus_chok1gshd
ENSGAGG00000013289PUF609298.084ENSCGRG00000003717Puf609298.269Cricetulus_griseus_crigri
ENSGAGG00000013289PUF609771.767ENSCSEG00000014845-8977.470Cynoglossus_semilaevis
ENSGAGG00000013289PUF609285.769ENSCSEG00000019887puf60b9285.905Cynoglossus_semilaevis
ENSGAGG00000013289PUF608380.169ENSCVAG00000001560-9880.169Cyprinodon_variegatus
ENSGAGG00000013289PUF609184.261ENSCVAG00000009386puf60b10085.221Cyprinodon_variegatus
ENSGAGG00000013289PUF609179.135ENSDARG00000001241puf60b9995.238Danio_rerio
ENSGAGG00000013289PUF609186.932ENSDARG00000032175puf60a9993.617Danio_rerio
ENSGAGG00000013289PUF608983.432ENSDNOG00000043278PUF609083.432Dasypus_novemcinctus
ENSGAGG00000013289PUF609298.467ENSDORG00000004585Puf609498.462Dipodomys_ordii
ENSGAGG00000013289PUF608851.418FBgn0028577hfp9951.927Drosophila_melanogaster
ENSGAGG00000013289PUF609562.081ENSEBUG00000014291puf60b8466.490Eptatretus_burgeri
ENSGAGG00000013289PUF608873.045ENSEBUG00000005470-8872.428Eptatretus_burgeri
ENSGAGG00000013289PUF609398.106ENSEASG00005009695PUF609998.106Equus_asinus_asinus
ENSGAGG00000013289PUF609298.473ENSECAG00000024681PUF609898.473Equus_caballus
ENSGAGG00000013289PUF609186.588ENSELUG00000018443-9986.391Esox_lucius
ENSGAGG00000013289PUF609383.083ENSELUG00000006507puf60b9981.136Esox_lucius
ENSGAGG00000013289PUF609397.727ENSFCAG00000001045PUF6010098.256Felis_catus
ENSGAGG00000013289PUF609285.851ENSFALG00000001136PUF609886.923Ficedula_albicollis
ENSGAGG00000013289PUF609298.659ENSFDAG00000017177PUF609398.659Fukomys_damarensis
ENSGAGG00000013289PUF609383.647ENSFHEG00000020046puf60b10085.605Fundulus_heteroclitus
ENSGAGG00000013289PUF608779.719ENSFHEG00000021687PUF6010080.777Fundulus_heteroclitus
ENSGAGG00000013289PUF609271.992ENSGMOG00000006392puf60b9971.132Gadus_morhua
ENSGAGG00000013289PUF606198.256ENSGALG00000039901PUF609498.256Gallus_gallus
ENSGAGG00000013289PUF609383.396ENSGAFG00000021040puf60b10085.605Gambusia_affinis
ENSGAGG00000013289PUF609179.242ENSGAFG00000004334-9979.184Gambusia_affinis
ENSGAGG00000013289PUF609373.596ENSGACG00000004717puf60b9873.714Gasterosteus_aculeatus
ENSGAGG00000013289PUF609369.697ENSGACG00000001484-10070.349Gasterosteus_aculeatus
ENSGAGG00000013289PUF609397.727ENSGGOG00000004646PUF609997.727Gorilla_gorilla
ENSGAGG00000013289PUF609182.341ENSHBUG00000009634-10082.341Haplochromis_burtoni
ENSGAGG00000013289PUF609384.369ENSHBUG00000015118puf60b10085.029Haplochromis_burtoni
ENSGAGG00000013289PUF609298.659ENSHGLG00000006111PUF609398.659Heterocephalus_glaber_female
ENSGAGG00000013289PUF609298.659ENSHGLG00100012362PUF609398.659Heterocephalus_glaber_male
ENSGAGG00000013289PUF608966.472ENSHCOG00000000378-9965.038Hippocampus_comes
ENSGAGG00000013289PUF609181.181ENSHCOG00000015541puf60b10081.734Hippocampus_comes
ENSGAGG00000013289PUF609178.692ENSIPUG00000004660puf60b9978.759Ictalurus_punctatus
ENSGAGG00000013289PUF609282.031ENSIPUG00000002453puf60a9982.798Ictalurus_punctatus
ENSGAGG00000013289PUF609298.659ENSSTOG00000025037PUF609398.654Ictidomys_tridecemlineatus
ENSGAGG00000013289PUF609298.276ENSJJAG00000001076Puf609398.276Jaculus_jaculus
ENSGAGG00000013289PUF609177.883ENSKMAG00000010106-10075.373Kryptolebias_marmoratus
ENSGAGG00000013289PUF609184.645ENSKMAG00000016745puf60b10085.605Kryptolebias_marmoratus
ENSGAGG00000013289PUF609284.416ENSLBEG00000012505puf60b10084.416Labrus_bergylta
ENSGAGG00000013289PUF606691.257ENSLACG00000005456PUF6010091.257Latimeria_chalumnae
ENSGAGG00000013289PUF609390.056ENSLOCG00000010106puf60b9891.396Lepisosteus_oculatus
ENSGAGG00000013289PUF609297.318ENSLAFG00000022929PUF609497.318Loxodonta_africana
ENSGAGG00000013289PUF609397.727ENSMFAG00000043373PUF609997.727Macaca_fascicularis
ENSGAGG00000013289PUF609397.727ENSMMUG00000013558PUF609997.727Macaca_mulatta
ENSGAGG00000013289PUF609397.727ENSMNEG00000031099PUF609997.727Macaca_nemestrina
ENSGAGG00000013289PUF609198.256ENSMLEG00000040009PUF6010098.256Mandrillus_leucophaeus
ENSGAGG00000013289PUF609285.227ENSMAMG00000010394puf60b10083.925Mastacembelus_armatus
ENSGAGG00000013289PUF609282.642ENSMAMG00000019476-9883.301Mastacembelus_armatus
ENSGAGG00000013289PUF609185.221ENSMZEG00005018515puf60b10085.029Maylandia_zebra
ENSGAGG00000013289PUF609281.132ENSMZEG00005019425-9882.342Maylandia_zebra
ENSGAGG00000013289PUF609299.042ENSMGAG00000013070PUF609899.042Meleagris_gallopavo
ENSGAGG00000013289PUF606498.361ENSMAUG00000014267-9098.361Mesocricetus_auratus
ENSGAGG00000013289PUF608782.573ENSMAUG00000018549-9582.573Mesocricetus_auratus
ENSGAGG00000013289PUF609398.106ENSMICG00000012226PUF609998.106Microcebus_murinus
ENSGAGG00000013289PUF609298.084ENSMOCG00000018780Puf609398.084Microtus_ochrogaster
ENSGAGG00000013289PUF609185.988ENSMMOG00000004217puf60b10085.605Mola_mola
ENSGAGG00000013289PUF609275.296ENSMMOG00000018059-9976.941Mola_mola
ENSGAGG00000013289PUF609794.579ENSMODG00000009161PUF609498.608Monodelphis_domestica
ENSGAGG00000013289PUF609278.178ENSMALG00000006797puf60b9877.905Monopterus_albus
ENSGAGG00000013289PUF609280.377ENSMALG00000000200-9880.153Monopterus_albus
ENSGAGG00000013289PUF609298.276MGP_CAROLIEiJ_G0019910Puf609398.276Mus_caroli
ENSGAGG00000013289PUF609298.276ENSMUSG00000002524Puf609398.276Mus_musculus
ENSGAGG00000013289PUF609298.276MGP_PahariEiJ_G0019920Puf609398.276Mus_pahari
ENSGAGG00000013289PUF609298.276MGP_SPRETEiJ_G0020812Puf609398.276Mus_spretus
ENSGAGG00000013289PUF609298.276ENSMPUG00000008137PUF609298.269Mustela_putorius_furo
ENSGAGG00000013289PUF609393.738ENSMLUG00000013032-9894.433Myotis_lucifugus
ENSGAGG00000013289PUF609297.701ENSMLUG00000000238-9397.701Myotis_lucifugus
ENSGAGG00000013289PUF609298.276ENSNGAG00000000712Puf6010098.450Nannospalax_galili
ENSGAGG00000013289PUF609281.474ENSNBRG00000017223-9882.692Neolamprologus_brichardi
ENSGAGG00000013289PUF607780.795ENSNBRG00000013047puf60b9783.529Neolamprologus_brichardi
ENSGAGG00000013289PUF609397.652ENSNLEG00000002156PUF609997.652Nomascus_leucogenys
ENSGAGG00000013289PUF606899.317ENSOPRG00000002147PUF607599.317Ochotona_princeps
ENSGAGG00000013289PUF608973.570ENSODEG00000015513-9671.954Octodon_degus
ENSGAGG00000013289PUF6067100.000ENSODEG00000014024-90100.000Octodon_degus
ENSGAGG00000013289PUF609381.356ENSONIG00000014030-9782.534Oreochromis_niloticus
ENSGAGG00000013289PUF609284.630ENSONIG00000006247puf60b9884.571Oreochromis_niloticus
ENSGAGG00000013289PUF609078.210ENSOANG00000006962PUF609878.782Ornithorhynchus_anatinus
ENSGAGG00000013289PUF609178.598ENSORLG00000028655-9978.137Oryzias_latipes
ENSGAGG00000013289PUF609384.774ENSORLG00000012279puf60b10085.029Oryzias_latipes
ENSGAGG00000013289PUF609278.049ENSORLG00020018144-9878.286Oryzias_latipes_hni
ENSGAGG00000013289PUF609384.774ENSORLG00020007333puf6010085.029Oryzias_latipes_hni
ENSGAGG00000013289PUF609178.748ENSORLG00015016833-9878.286Oryzias_latipes_hsok
ENSGAGG00000013289PUF609383.895ENSORLG00015007718puf60b10084.895Oryzias_latipes_hsok
ENSGAGG00000013289PUF609279.886ENSOMEG00000022185-9879.962Oryzias_melastigma
ENSGAGG00000013289PUF609382.320ENSOMEG00000001643puf60b9983.434Oryzias_melastigma
ENSGAGG00000013289PUF609298.659ENSOGAG00000006259PUF609398.654Otolemur_garnettii
ENSGAGG00000013289PUF609295.785ENSOARG00000016235PUF609895.785Ovis_aries
ENSGAGG00000013289PUF609397.727ENSPPAG00000029933PUF609997.727Pan_paniscus
ENSGAGG00000013289PUF609397.727ENSPPRG00000003257PUF6010098.256Panthera_pardus
ENSGAGG00000013289PUF609297.822ENSPTIG00000009795PUF609995.785Panthera_tigris_altaica
ENSGAGG00000013289PUF609397.338ENSPTRG00000043963-9997.338Pan_troglodytes
ENSGAGG00000013289PUF609397.538ENSPTRG00000020670PUF609997.538Pan_troglodytes
ENSGAGG00000013289PUF609397.727ENSPANG00000021936PUF609997.727Papio_anubis
ENSGAGG00000013289PUF609584.688ENSPKIG00000004295puf60a9992.353Paramormyrops_kingsleyae
ENSGAGG00000013289PUF609188.654ENSPKIG00000012204puf60b10088.462Paramormyrops_kingsleyae
ENSGAGG00000013289PUF609299.234ENSPSIG00000004679PUF609999.234Pelodiscus_sinensis
ENSGAGG00000013289PUF609183.969ENSPMGG00000013444puf60b9984.351Periophthalmus_magnuspinnatus
ENSGAGG00000013289PUF609298.084ENSPEMG00000008820Puf609398.084Peromyscus_maniculatus_bairdii
ENSGAGG00000013289PUF609595.764ENSPCIG00000020270PUF609998.282Phascolarctos_cinereus
ENSGAGG00000013289PUF609279.507ENSPFOG00000011118-9781.081Poecilia_formosa
ENSGAGG00000013289PUF609383.396ENSPFOG00000019217puf60b9984.646Poecilia_formosa
ENSGAGG00000013289PUF609184.645ENSPLAG00000010754puf60b10085.605Poecilia_latipinna
ENSGAGG00000013289PUF609279.507ENSPLAG00000017025-9080.695Poecilia_latipinna
ENSGAGG00000013289PUF609383.396ENSPMEG00000000838puf60b10085.605Poecilia_mexicana
ENSGAGG00000013289PUF609279.696ENSPMEG00000009767-9081.274Poecilia_mexicana
ENSGAGG00000013289PUF609380.952ENSPREG00000005440puf60b10083.333Poecilia_reticulata
ENSGAGG00000013289PUF607396.403ENSPPYG00000018951-9596.403Pongo_abelii
ENSGAGG00000013289PUF607398.561ENSPCAG00000014837PUF6010098.561Procavia_capensis
ENSGAGG00000013289PUF609398.106ENSPCOG00000027981PUF609998.282Propithecus_coquereli
ENSGAGG00000013289PUF609199.367ENSPVAG00000016167PUF608199.367Pteropus_vampyrus
ENSGAGG00000013289PUF609281.132ENSPNYG00000004273-9882.342Pundamilia_nyererei
ENSGAGG00000013289PUF609185.221ENSPNYG00000002556puf60b10085.029Pundamilia_nyererei
ENSGAGG00000013289PUF609179.921ENSPNAG00000019415puf60b9077.120Pygocentrus_nattereri
ENSGAGG00000013289PUF609285.214ENSPNAG00000019909puf60a9985.323Pygocentrus_nattereri
ENSGAGG00000013289PUF609298.276ENSRNOG00000009960Puf609398.276Rattus_norvegicus
ENSGAGG00000013289PUF609397.727ENSRBIG00000035274PUF609997.727Rhinopithecus_bieti
ENSGAGG00000013289PUF609397.727ENSRROG00000029360PUF609997.897Rhinopithecus_roxellana
ENSGAGG00000013289PUF609594.610ENSSBOG00000027089PUF6010095.857Saimiri_boliviensis_boliviensis
ENSGAGG00000013289PUF608893.400ENSSHAG00000006668PUF609097.650Sarcophilus_harrisii
ENSGAGG00000013289PUF609281.982ENSSFOG00015019371puf60a9887.928Scleropages_formosus
ENSGAGG00000013289PUF609182.857ENSSFOG00015019619puf60b9986.437Scleropages_formosus
ENSGAGG00000013289PUF606891.319ENSSMAG00000016381puf60b7392.883Scophthalmus_maximus
ENSGAGG00000013289PUF609280.645ENSSDUG00000007048-9780.695Seriola_dumerili
ENSGAGG00000013289PUF609283.302ENSSDUG00000009935puf60b9984.242Seriola_dumerili
ENSGAGG00000013289PUF609180.989ENSSLDG00000007366-9980.266Seriola_lalandi_dorsalis
ENSGAGG00000013289PUF609185.687ENSSLDG00000024011puf60b10083.551Seriola_lalandi_dorsalis
ENSGAGG00000013289PUF606185.549ENSSPUG00000013518PUF609486.053Sphenodon_punctatus
ENSGAGG00000013289PUF609182.061ENSSPAG00000020285-10082.634Stegastes_partitus
ENSGAGG00000013289PUF609382.234ENSSPAG00000012144puf60b10083.738Stegastes_partitus
ENSGAGG00000013289PUF609397.456ENSSSCG00000038800PUF609997.456Sus_scrofa
ENSGAGG00000013289PUF609295.402ENSTGUG00000012797-9995.385Taeniopygia_guttata
ENSGAGG00000013289PUF609179.760ENSTRUG00000008843-10080.361Takifugu_rubripes
ENSGAGG00000013289PUF609284.820ENSTRUG00000005420puf60b10083.178Takifugu_rubripes
ENSGAGG00000013289PUF609277.969ENSTNIG00000003069-9978.613Tetraodon_nigroviridis
ENSGAGG00000013289PUF609284.630ENSTNIG00000013675puf60b9984.762Tetraodon_nigroviridis
ENSGAGG00000013289PUF605695.946ENSTBEG00000002751-9995.946Tupaia_belangeri
ENSGAGG00000013289PUF607079.769ENSTBEG00000001899-10080.925Tupaia_belangeri
ENSGAGG00000013289PUF609197.868ENSTTRG00000017088PUF6010097.868Tursiops_truncatus
ENSGAGG00000013289PUF609398.106ENSUAMG00000024917PUF609998.106Ursus_americanus
ENSGAGG00000013289PUF609293.295ENSUMAG00000000272PUF609393.077Ursus_maritimus
ENSGAGG00000013289PUF609298.467ENSVVUG00000022527PUF6010098.643Vulpes_vulpes
ENSGAGG00000013289PUF609394.129ENSXETG00000012469puf609995.427Xenopus_tropicalis
ENSGAGG00000013289PUF609184.127ENSXCOG00000012355puf60b10085.119Xiphophorus_couchianus
ENSGAGG00000013289PUF609280.079ENSXMAG00000010507-9880.639Xiphophorus_maculatus
ENSGAGG00000013289PUF609383.396ENSXMAG00000001862puf60b10085.605Xiphophorus_maculatus

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