EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAGG00000013330 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Gopherus_agassizii
Status: putative
Strand: Plus strand
Length: 12201 bases
Position: chrPPEB01002418.1:18536-30736
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAGP00000017982	RRM_1	PF00076.22	1.1e-62	1	4
ENSGAGP00000017982	RRM_1	PF00076.22	1.1e-62	2	4
ENSGAGP00000017982	RRM_1	PF00076.22	1.1e-62	3	4
ENSGAGP00000017982	RRM_1	PF00076.22	1.1e-62	4	4
ENSGAGP00000017985	RRM_1	PF00076.22	1.1e-62	1	4
ENSGAGP00000017985	RRM_1	PF00076.22	1.1e-62	2	4
ENSGAGP00000017985	RRM_1	PF00076.22	1.1e-62	3	4
ENSGAGP00000017985	RRM_1	PF00076.22	1.1e-62	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAGT00000020510	-	3341	-	ENSGAGP00000017982	675 (aa)	-	-
ENSGAGT00000020513	-	3695	-	ENSGAGP00000017985	680 (aa)	-	-

Gene Model

Click here to download ENSGAGG00000013330's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAGG00000013330's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAGG00000013330	-	53	31.667	ENSGAGG00000007529	TIA1	73	31.667

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAGG00000013330	-	56	62.533	ENSAPOG00000023888	ncl	82	56.763	Acanthochromis_polyacanthus
ENSGAGG00000013330	-	76	34.586	ENSAPOG00000014534	-	67	39.695	Acanthochromis_polyacanthus
ENSGAGG00000013330	-	56	61.436	ENSACIG00000013234	ncl	62	61.538	Amphilophus_citrinellus
ENSGAGG00000013330	-	56	62.533	ENSAOCG00000003133	ncl	89	51.372	Amphiprion_ocellaris
ENSGAGG00000013330	-	70	34.630	ENSAOCG00000014792	-	61	38.931	Amphiprion_ocellaris
ENSGAGG00000013330	-	56	62.533	ENSAPEG00000002769	ncl	89	50.920	Amphiprion_percula
ENSGAGG00000013330	-	70	34.436	ENSAPEG00000013612	-	60	38.677	Amphiprion_percula
ENSGAGG00000013330	-	56	62.269	ENSATEG00000013343	ncl	90	48.545	Anabas_testudineus
ENSGAGG00000013330	-	72	40.467	ENSATEG00000019862	-	75	44.744	Anabas_testudineus
ENSGAGG00000013330	-	84	62.479	ENSACAG00000001006	-	82	61.157	Anolis_carolinensis
ENSGAGG00000013330	-	56	59.416	ENSAMXG00000001647	ncl	81	61.438	Astyanax_mexicanus
ENSGAGG00000013330	-	53	48.493	ENSCHIG00000012665	-	64	48.894	Capra_hircus
ENSGAGG00000013330	-	90	91.354	ENSCPBG00000016444	-	91	90.865	Chrysemys_picta_bellii
ENSGAGG00000013330	-	56	60.836	ENSCSEG00000015089	ncl	57	60.938	Cynoglossus_semilaevis
ENSGAGG00000013330	-	55	62.500	ENSCVAG00000012600	ncl	54	62.632	Cyprinodon_variegatus
ENSGAGG00000013330	-	56	62.467	ENSDARG00000002710	ncl	80	65.595	Danio_rerio
ENSGAGG00000013330	-	68	47.357	ENSDNOG00000031611	-	81	47.516	Dasypus_novemcinctus
ENSGAGG00000013330	-	64	50.114	ENSDNOG00000040257	-	71	50.000	Dasypus_novemcinctus
ENSGAGG00000013330	-	57	47.179	ENSELUG00000022826	-	81	47.917	Esox_lucius
ENSGAGG00000013330	-	56	60.892	ENSELUG00000006033	ncl	89	51.097	Esox_lucius
ENSGAGG00000013330	-	57	76.425	ENSFALG00000007592	-	91	64.577	Ficedula_albicollis
ENSGAGG00000013330	-	56	60.052	ENSFHEG00000018000	ncl	73	60.417	Fundulus_heteroclitus
ENSGAGG00000013330	-	57	57.732	ENSGMOG00000001341	ncl	60	56.693	Gadus_morhua
ENSGAGG00000013330	-	57	78.442	ENSGALG00000032930	NCL	92	68.711	Gallus_gallus
ENSGAGG00000013330	-	56	62.533	ENSGAFG00000015375	ncl	50	62.632	Gambusia_affinis
ENSGAGG00000013330	-	64	56.208	ENSGACG00000008970	ncl	64	56.278	Gasterosteus_aculeatus
ENSGAGG00000013330	-	56	62.005	ENSHBUG00000006869	ncl	89	50.920	Haplochromis_burtoni
ENSGAGG00000013330	-	56	62.467	ENSHCOG00000010234	ncl	60	59.410	Hippocampus_comes
ENSGAGG00000013330	-	56	61.214	ENSKMAG00000008111	ncl	90	49.242	Kryptolebias_marmoratus
ENSGAGG00000013330	-	54	40.260	ENSLBEG00000014278	-	82	40.701	Labrus_bergylta
ENSGAGG00000013330	-	55	60.743	ENSLBEG00000019073	ncl	55	60.847	Labrus_bergylta
ENSGAGG00000013330	-	56	40.355	ENSLBEG00000007915	-	64	40.789	Labrus_bergylta
ENSGAGG00000013330	-	57	66.240	ENSLACG00000009328	ncl	91	52.496	Latimeria_chalumnae
ENSGAGG00000013330	-	61	50.119	ENSLACG00000022167	-	80	51.421	Latimeria_chalumnae
ENSGAGG00000013330	-	54	63.187	ENSLOCG00000004828	ncl	75	52.773	Lepisosteus_oculatus
ENSGAGG00000013330	-	65	35.931	ENSMAMG00000003479	-	65	38.649	Mastacembelus_armatus
ENSGAGG00000013330	-	55	62.599	ENSMAMG00000002086	ncl	77	47.590	Mastacembelus_armatus
ENSGAGG00000013330	-	56	61.478	ENSMZEG00005017438	ncl	89	49.847	Maylandia_zebra
ENSGAGG00000013330	-	61	76.289	ENSMGAG00000008147	-	99	78.571	Meleagris_gallopavo
ENSGAGG00000013330	-	56	67.692	ENSMODG00000002470	-	91	58.780	Monodelphis_domestica
ENSGAGG00000013330	-	56	56.806	ENSMALG00000014827	ncl	59	57.488	Monopterus_albus
ENSGAGG00000013330	-	63	56.322	ENSMPUG00000001663	-	66	49.686	Mustela_putorius_furo
ENSGAGG00000013330	-	56	37.467	ENSONIG00000010631	-	96	37.600	Oreochromis_niloticus
ENSGAGG00000013330	-	56	62.005	ENSONIG00000012508	ncl	89	48.795	Oreochromis_niloticus
ENSGAGG00000013330	-	59	31.542	ENSORLG00000004645	-	85	31.941	Oryzias_latipes
ENSGAGG00000013330	-	53	61.389	ENSORLG00000007055	ncl	62	54.526	Oryzias_latipes
ENSGAGG00000013330	-	54	61.081	ENSORLG00020017943	ncl	58	57.143	Oryzias_latipes_hni
ENSGAGG00000013330	-	57	33.002	ENSORLG00020003497	-	73	33.862	Oryzias_latipes_hni
ENSGAGG00000013330	-	56	33.586	ENSORLG00015006613	-	75	34.127	Oryzias_latipes_hsok
ENSGAGG00000013330	-	56	60.686	ENSOMEG00000020786	ncl	57	59.080	Oryzias_melastigma
ENSGAGG00000013330	-	56	32.821	ENSOMEG00000015864	-	79	33.423	Oryzias_melastigma
ENSGAGG00000013330	-	77	63.089	ENSPKIG00000002604	ncl	53	63.255	Paramormyrops_kingsleyae
ENSGAGG00000013330	-	90	76.702	ENSPSIG00000002361	-	92	76.435	Pelodiscus_sinensis
ENSGAGG00000013330	-	56	60.471	ENSPMGG00000004709	ncl	79	64.013	Periophthalmus_magnuspinnatus
ENSGAGG00000013330	-	65	39.545	ENSPMAG00000003855	ncl	70	37.566	Petromyzon_marinus
ENSGAGG00000013330	-	56	62.797	ENSPFOG00000024205	ncl	51	63.158	Poecilia_formosa
ENSGAGG00000013330	-	56	62.797	ENSPLAG00000024026	ncl	51	63.158	Poecilia_latipinna
ENSGAGG00000013330	-	56	62.797	ENSPMEG00000006000	ncl	51	63.158	Poecilia_mexicana
ENSGAGG00000013330	-	56	61.478	ENSPNYG00000020494	ncl	89	50.077	Pundamilia_nyererei
ENSGAGG00000013330	-	56	62.042	ENSPNAG00000006192	ncl	72	53.927	Pygocentrus_nattereri
ENSGAGG00000013330	-	58	63.636	ENSSHAG00000007489	-	100	53.442	Sarcophilus_harrisii
ENSGAGG00000013330	-	61	60.621	ENSSHAG00000002702	-	69	61.062	Sarcophilus_harrisii
ENSGAGG00000013330	-	52	41.290	ENSSFOG00015013153	-	80	41.290	Scleropages_formosus
ENSGAGG00000013330	-	56	65.274	ENSSFOG00015008583	ncl	94	53.555	Scleropages_formosus
ENSGAGG00000013330	-	57	40.000	ENSSMAG00000007582	-	62	40.253	Scophthalmus_maximus
ENSGAGG00000013330	-	56	59.845	ENSSMAG00000021241	ncl	53	60.313	Scophthalmus_maximus
ENSGAGG00000013330	-	59	40.380	ENSSDUG00000010922	-	71	40.898	Seriola_dumerili
ENSGAGG00000013330	-	56	63.298	ENSSDUG00000006128	ncl	85	63.660	Seriola_dumerili
ENSGAGG00000013330	-	59	39.336	ENSSLDG00000015784	-	65	40.253	Seriola_lalandi_dorsalis
ENSGAGG00000013330	-	56	62.005	ENSSLDG00000002012	ncl	65	56.907	Seriola_lalandi_dorsalis
ENSGAGG00000013330	-	90	68.088	ENSSPUG00000008244	-	91	68.038	Sphenodon_punctatus
ENSGAGG00000013330	-	61	40.426	ENSSPAG00000001859	-	61	40.310	Stegastes_partitus
ENSGAGG00000013330	-	64	69.556	ENSTGUG00000009782	-	90	65.862	Taeniopygia_guttata
ENSGAGG00000013330	-	54	60.109	ENSTRUG00000008185	ncl	63	57.241	Takifugu_rubripes
ENSGAGG00000013330	-	56	64.508	ENSXETG00000009517	ncl	54	66.057	Xenopus_tropicalis
ENSGAGG00000013330	-	57	36.111	ENSXCOG00000007369	-	86	37.027	Xiphophorus_couchianus
ENSGAGG00000013330	-	56	45.342	ENSXCOG00000003524	ncl	85	50.213	Xiphophorus_couchianus