EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAGG00000013639 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Gopherus_agassizii
Status: putative
Strand: Minus strand
Length: 11208 bases
Position: chrPPEB01005791.1:76138-87345
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAGP00000018429	SMN	PF06003.12	5.8e-65	1	2
ENSGAGP00000018429	SMN	PF06003.12	5.8e-65	2	2
ENSGAGP00000018430	SMN	PF06003.12	5.8e-65	1	2
ENSGAGP00000018430	SMN	PF06003.12	5.8e-65	2	2
ENSGAGP00000018432	SMN	PF06003.12	5.8e-65	1	2
ENSGAGP00000018432	SMN	PF06003.12	5.8e-65	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAGT00000021001	-	2176	-	ENSGAGP00000018429	347 (aa)	-	-
ENSGAGT00000021002	-	2176	-	ENSGAGP00000018430	347 (aa)	-	-
ENSGAGT00000021005	-	2176	-	ENSGAGP00000018432	347 (aa)	-	-

Gene Model

Click here to download ENSGAGG00000013639's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAGG00000013639's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAGG00000013639	-	92	38.974	ENSGAGG00000011374	-	98	40.201

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAGG00000013639	-	89	38.503	ENSG00000172062	SMN1	93	36.434	Homo_sapiens
ENSGAGG00000013639	-	89	38.503	ENSG00000205571	SMN2	72	57.576	Homo_sapiens
ENSGAGG00000013639	-	92	36.893	ENSAPOG00000011324	smn1	98	36.199	Acanthochromis_polyacanthus
ENSGAGG00000013639	-	56	48.485	ENSAMEG00000003316	-	89	35.659	Ailuropoda_melanoleuca
ENSGAGG00000013639	-	51	44.595	ENSACIG00000007598	smn1	92	39.640	Amphilophus_citrinellus
ENSGAGG00000013639	-	92	32.836	ENSACIG00000019772	-	99	33.023	Amphilophus_citrinellus
ENSGAGG00000013639	-	92	35.821	ENSAOCG00000024444	smn1	98	35.075	Amphiprion_ocellaris
ENSGAGG00000013639	-	95	35.821	ENSAPEG00000016504	smn1	98	35.075	Amphiprion_percula
ENSGAGG00000013639	-	92	36.620	ENSATEG00000002182	smn1	58	37.056	Anabas_testudineus
ENSGAGG00000013639	-	69	55.556	ENSAPLG00000010912	-	98	55.556	Anas_platyrhynchos
ENSGAGG00000013639	-	90	36.449	ENSANAG00000032133	-	91	38.498	Aotus_nancymaae
ENSGAGG00000013639	-	89	35.821	ENSACLG00000007308	smn1	93	36.598	Astatotilapia_calliptera
ENSGAGG00000013639	-	54	54.545	ENSAMXG00000013884	smn1	97	38.424	Astyanax_mexicanus
ENSGAGG00000013639	-	87	41.593	ENSBTAG00000005743	SMN2	93	37.209	Bos_taurus
ENSGAGG00000013639	-	90	38.542	ENSCJAG00000016290	-	94	37.559	Callithrix_jacchus
ENSGAGG00000013639	-	89	38.931	ENSCAFG00000007812	SMN	95	36.765	Canis_familiaris
ENSGAGG00000013639	-	89	38.931	ENSCAFG00020019229	-	88	36.765	Canis_lupus_dingo
ENSGAGG00000013639	-	91	37.209	ENSCHIG00000015559	-	91	37.209	Capra_hircus
ENSGAGG00000013639	-	95	34.946	ENSTSYG00000012058	-	95	35.789	Carlito_syrichta
ENSGAGG00000013639	-	73	44.304	ENSCAPG00000011021	-	86	50.794	Cavia_aperea
ENSGAGG00000013639	-	59	48.485	ENSCPOG00000036973	-	94	35.437	Cavia_porcellus
ENSGAGG00000013639	-	60	48.485	ENSCPOG00000012328	-	93	36.054	Cavia_porcellus
ENSGAGG00000013639	-	90	38.168	ENSCCAG00000018127	-	94	37.441	Cebus_capucinus
ENSGAGG00000013639	-	92	37.173	ENSCATG00000037002	-	91	36.818	Cercocebus_atys
ENSGAGG00000013639	-	93	37.681	ENSCLAG00000000284	-	94	37.681	Chinchilla_lanigera
ENSGAGG00000013639	-	56	51.515	ENSCSAG00000015688	-	91	39.151	Chlorocebus_sabaeus
ENSGAGG00000013639	-	50	52.459	ENSCHOG00000007346	-	97	41.593	Choloepus_hoffmanni
ENSGAGG00000013639	-	93	38.974	ENSCPBG00000010968	-	95	38.660	Chrysemys_picta_bellii
ENSGAGG00000013639	-	90	38.095	ENSCANG00000038242	-	91	38.571	Colobus_angolensis_palliatus
ENSGAGG00000013639	-	85	38.261	ENSCANG00000033324	-	84	37.168	Colobus_angolensis_palliatus
ENSGAGG00000013639	-	56	48.485	ENSCGRG00001017959	-	95	36.765	Cricetulus_griseus_chok1gshd
ENSGAGG00000013639	-	56	48.485	ENSCGRG00000007698	Smn1	95	36.765	Cricetulus_griseus_crigri
ENSGAGG00000013639	-	60	50.000	ENSCVAG00000007498	smn1	97	32.653	Cyprinodon_variegatus
ENSGAGG00000013639	-	95	37.915	ENSDARG00000018494	smn1	97	32.335	Danio_rerio
ENSGAGG00000013639	-	55	48.387	ENSDNOG00000045949	-	56	48.387	Dasypus_novemcinctus
ENSGAGG00000013639	-	54	57.895	ENSETEG00000001406	-	87	37.736	Echinops_telfairi
ENSGAGG00000013639	-	87	34.351	ENSEBUG00000011902	smn1	96	35.948	Eptatretus_burgeri
ENSGAGG00000013639	-	50	44.262	ENSEASG00005018000	-	87	35.500	Equus_asinus_asinus
ENSGAGG00000013639	-	56	50.000	ENSECAG00000015215	-	93	38.164	Equus_caballus
ENSGAGG00000013639	-	84	41.593	ENSEEUG00000015777	-	97	40.541	Erinaceus_europaeus
ENSGAGG00000013639	-	93	39.394	ENSELUG00000018067	smn1	99	39.394	Esox_lucius
ENSGAGG00000013639	-	92	37.912	ENSFCAG00000028292	SMN	92	35.507	Felis_catus
ENSGAGG00000013639	-	89	42.609	ENSFALG00000012320	-	90	41.837	Ficedula_albicollis
ENSGAGG00000013639	-	93	38.889	ENSFDAG00000017683	-	92	39.500	Fukomys_damarensis
ENSGAGG00000013639	-	93	34.058	ENSFHEG00000018508	smn1	97	34.921	Fundulus_heteroclitus
ENSGAGG00000013639	-	98	33.898	ENSGMOG00000017279	smn1	50	40.449	Gadus_morhua
ENSGAGG00000013639	-	92	39.394	ENSGALG00000002430	SMN	50	55.172	Gallus_gallus
ENSGAGG00000013639	-	95	39.896	ENSGAFG00000009501	smn1	85	50.000	Gambusia_affinis
ENSGAGG00000013639	-	92	39.691	ENSGACG00000010584	smn1	95	37.555	Gasterosteus_aculeatus
ENSGAGG00000013639	-	87	38.168	ENSGGOG00000003872	-	93	37.363	Gorilla_gorilla
ENSGAGG00000013639	-	56	50.000	ENSGGOG00000026704	-	85	37.607	Gorilla_gorilla
ENSGAGG00000013639	-	92	37.624	ENSHBUG00000013987	smn1	97	38.889	Haplochromis_burtoni
ENSGAGG00000013639	-	54	50.847	ENSHGLG00000001018	-	92	39.231	Heterocephalus_glaber_female
ENSGAGG00000013639	-	54	50.847	ENSHGLG00100011252	-	92	39.231	Heterocephalus_glaber_male
ENSGAGG00000013639	-	88	35.821	ENSHCOG00000017136	smn1	65	39.130	Hippocampus_comes
ENSGAGG00000013639	-	96	37.255	ENSIPUG00000012580	smn1	87	31.737	Ictalurus_punctatus
ENSGAGG00000013639	-	57	48.571	ENSSTOG00000012288	-	93	37.629	Ictidomys_tridecemlineatus
ENSGAGG00000013639	-	50	58.491	ENSJJAG00000014853	-	83	38.318	Jaculus_jaculus
ENSGAGG00000013639	-	92	36.408	ENSKMAG00000007239	smn1	97	35.075	Kryptolebias_marmoratus
ENSGAGG00000013639	-	95	36.029	ENSLBEG00000022550	smn1	78	35.685	Labrus_bergylta
ENSGAGG00000013639	-	98	38.922	ENSLACG00000009808	-	52	42.105	Latimeria_chalumnae
ENSGAGG00000013639	-	93	40.000	ENSLOCG00000000801	-	91	38.519	Lepisosteus_oculatus
ENSGAGG00000013639	-	93	36.842	ENSLOCG00000011339	smn1	97	36.842	Lepisosteus_oculatus
ENSGAGG00000013639	-	56	50.746	ENSLAFG00000003425	-	99	31.250	Loxodonta_africana
ENSGAGG00000013639	-	88	40.000	ENSMFAG00000008812	-	91	36.364	Macaca_fascicularis
ENSGAGG00000013639	-	90	38.624	ENSMFAG00000031523	SMN1	91	39.823	Macaca_fascicularis
ENSGAGG00000013639	-	90	38.624	ENSMMUG00000020214	SMN1	91	38.679	Macaca_mulatta
ENSGAGG00000013639	-	59	43.243	ENSMMUG00000030594	-	91	36.364	Macaca_mulatta
ENSGAGG00000013639	-	91	38.144	ENSMNEG00000035094	-	92	38.071	Macaca_nemestrina
ENSGAGG00000013639	-	90	38.624	ENSMLEG00000041902	-	92	38.679	Mandrillus_leucophaeus
ENSGAGG00000013639	-	92	37.799	ENSMAMG00000011034	smn1	77	35.565	Mastacembelus_armatus
ENSGAGG00000013639	-	92	37.129	ENSMZEG00005013634	smn1	97	38.384	Maylandia_zebra
ENSGAGG00000013639	-	57	47.826	ENSMAUG00000010262	Smn1	51	45.333	Mesocricetus_auratus
ENSGAGG00000013639	-	56	51.562	ENSMICG00000034708	-	81	39.474	Microcebus_murinus
ENSGAGG00000013639	-	54	52.632	ENSMOCG00000017833	Smn1	95	36.585	Microtus_ochrogaster
ENSGAGG00000013639	-	91	36.567	ENSMMOG00000005504	smn1	98	36.082	Mola_mola
ENSGAGG00000013639	-	90	40.104	ENSMODG00000001436	-	63	42.342	Monodelphis_domestica
ENSGAGG00000013639	-	95	36.842	ENSMALG00000008025	smn1	98	32.132	Monopterus_albus
ENSGAGG00000013639	-	54	54.386	MGP_CAROLIEiJ_G0018836	Smn1	93	37.984	Mus_caroli
ENSGAGG00000013639	-	54	54.386	ENSMUSG00000021645	Smn1	93	37.209	Mus_musculus
ENSGAGG00000013639	-	54	54.386	MGP_SPRETEiJ_G0019718	Smn1	93	37.209	Mus_spretus
ENSGAGG00000013639	-	56	48.485	ENSMPUG00000014470	-	93	36.434	Mustela_putorius_furo
ENSGAGG00000013639	-	91	36.098	ENSNGAG00000019833	Smn1	96	35.185	Nannospalax_galili
ENSGAGG00000013639	-	92	37.073	ENSNBRG00000023000	smn1	98	38.806	Neolamprologus_brichardi
ENSGAGG00000013639	-	90	38.931	ENSNLEG00000004454	-	93	37.209	Nomascus_leucogenys
ENSGAGG00000013639	-	66	56.364	ENSMEUG00000011393	-	84	56.364	Notamacropus_eugenii
ENSGAGG00000013639	-	83	41.739	ENSOPRG00000002015	-	65	41.228	Ochotona_princeps
ENSGAGG00000013639	-	54	53.333	ENSODEG00000015976	-	94	35.556	Octodon_degus
ENSGAGG00000013639	-	92	36.567	ENSONIG00000011799	smn1	98	37.281	Oreochromis_niloticus
ENSGAGG00000013639	-	91	38.776	ENSOANG00000001626	-	96	38.806	Ornithorhynchus_anatinus
ENSGAGG00000013639	-	90	37.984	ENSOCUG00000017097	-	94	36.029	Oryctolagus_cuniculus
ENSGAGG00000013639	-	94	37.143	ENSOCUG00000026649	-	94	37.681	Oryctolagus_cuniculus
ENSGAGG00000013639	-	68	41.935	ENSORLG00000010552	smn1	70	37.624	Oryzias_latipes
ENSGAGG00000013639	-	92	38.624	ENSORLG00020007936	smn1	97	38.776	Oryzias_latipes_hni
ENSGAGG00000013639	-	71	42.718	ENSORLG00015022425	smn1	70	39.109	Oryzias_latipes_hsok
ENSGAGG00000013639	-	67	41.000	ENSOMEG00000007824	smn1	97	36.567	Oryzias_melastigma
ENSGAGG00000013639	-	59	47.143	ENSOGAG00000031414	-	63	36.585	Otolemur_garnettii
ENSGAGG00000013639	-	90	38.760	ENSOARG00000005425	-	97	38.760	Ovis_aries
ENSGAGG00000013639	-	89	38.503	ENSPPAG00000036640	-	93	36.434	Pan_paniscus
ENSGAGG00000013639	-	92	37.912	ENSPPRG00000005575	-	92	35.507	Panthera_pardus
ENSGAGG00000013639	-	92	37.912	ENSPTIG00000007745	-	92	38.119	Panthera_tigris_altaica
ENSGAGG00000013639	-	89	38.503	ENSPTRG00000016955	-	93	36.434	Pan_troglodytes
ENSGAGG00000013639	-	90	37.755	ENSPANG00000000253	-	90	39.674	Papio_anubis
ENSGAGG00000013639	-	90	38.624	ENSPANG00000013601	-	91	38.679	Papio_anubis
ENSGAGG00000013639	-	97	35.567	ENSPKIG00000011096	smn1	99	35.354	Paramormyrops_kingsleyae
ENSGAGG00000013639	-	87	40.351	ENSPSIG00000014787	-	66	39.801	Pelodiscus_sinensis
ENSGAGG00000013639	-	92	35.354	ENSPMGG00000012285	smn1	97	36.000	Periophthalmus_magnuspinnatus
ENSGAGG00000013639	-	92	34.252	ENSPMAG00000005004	smn1	90	34.363	Petromyzon_marinus
ENSGAGG00000013639	-	90	39.175	ENSPCIG00000025764	-	93	38.579	Phascolarctos_cinereus
ENSGAGG00000013639	-	95	35.610	ENSPFOG00000007786	smn1	97	35.294	Poecilia_formosa
ENSGAGG00000013639	-	95	39.896	ENSPLAG00000012071	smn1	97	35.714	Poecilia_latipinna
ENSGAGG00000013639	-	95	39.378	ENSPMEG00000017085	smn1	97	35.294	Poecilia_mexicana
ENSGAGG00000013639	-	95	40.933	ENSPREG00000005824	smn1	97	36.134	Poecilia_reticulata
ENSGAGG00000013639	-	51	50.000	ENSPPYG00000015533	-	91	40.708	Pongo_abelii
ENSGAGG00000013639	-	85	39.823	ENSPCAG00000004187	-	95	39.823	Procavia_capensis
ENSGAGG00000013639	-	65	39.823	ENSPCOG00000022307	-	75	39.823	Propithecus_coquereli
ENSGAGG00000013639	-	89	38.168	ENSPVAG00000005977	-	92	37.688	Pteropus_vampyrus
ENSGAGG00000013639	-	92	37.073	ENSPNYG00000014148	smn1	98	38.806	Pundamilia_nyererei
ENSGAGG00000013639	-	94	37.383	ENSPNAG00000014007	smn1	86	38.647	Pygocentrus_nattereri
ENSGAGG00000013639	-	90	37.379	ENSRNOG00000018067	Smn1	62	38.462	Rattus_norvegicus
ENSGAGG00000013639	-	94	37.879	ENSRBIG00000036775	-	88	36.434	Rhinopithecus_bieti
ENSGAGG00000013639	-	90	38.095	ENSRBIG00000037052	-	91	39.151	Rhinopithecus_bieti
ENSGAGG00000013639	-	93	37.824	ENSRROG00000031088	-	91	35.659	Rhinopithecus_roxellana
ENSGAGG00000013639	-	90	38.095	ENSRROG00000039399	-	91	39.151	Rhinopithecus_roxellana
ENSGAGG00000013639	-	90	38.021	ENSSBOG00000011665	-	91	37.500	Saimiri_boliviensis_boliviensis
ENSGAGG00000013639	-	54	50.000	ENSSBOG00000020112	-	74	36.667	Saimiri_boliviensis_boliviensis
ENSGAGG00000013639	-	90	39.378	ENSSHAG00000001499	-	89	38.776	Sarcophilus_harrisii
ENSGAGG00000013639	-	97	38.462	ENSSFOG00015015507	smn1	99	36.567	Scleropages_formosus
ENSGAGG00000013639	-	95	37.379	ENSSMAG00000007922	smn1	98	35.821	Scophthalmus_maximus
ENSGAGG00000013639	-	92	36.567	ENSSDUG00000018533	smn1	98	36.567	Seriola_dumerili
ENSGAGG00000013639	-	92	37.313	ENSSLDG00000021135	smn1	98	37.313	Seriola_lalandi_dorsalis
ENSGAGG00000013639	-	91	39.691	ENSSPUG00000000373	-	95	42.347	Sphenodon_punctatus
ENSGAGG00000013639	-	91	39.362	ENSSPAG00000004345	smn1	98	36.567	Stegastes_partitus
ENSGAGG00000013639	-	94	30.667	ENSSSCG00000029127	-	94	31.319	Sus_scrofa
ENSGAGG00000013639	-	56	54.237	ENSSSCG00000016970	-	94	38.916	Sus_scrofa
ENSGAGG00000013639	-	91	39.062	ENSTRUG00000000736	smn	96	36.719	Takifugu_rubripes
ENSGAGG00000013639	-	94	36.567	ENSTNIG00000009892	smn1	98	36.567	Tetraodon_nigroviridis
ENSGAGG00000013639	-	57	47.826	ENSTBEG00000002399	-	87	38.983	Tupaia_belangeri
ENSGAGG00000013639	-	57	44.286	ENSTTRG00000005080	-	93	35.075	Tursiops_truncatus
ENSGAGG00000013639	-	56	48.485	ENSUAMG00000024947	-	66	36.434	Ursus_americanus
ENSGAGG00000013639	-	56	48.485	ENSUMAG00000007842	-	69	36.434	Ursus_maritimus
ENSGAGG00000013639	-	89	38.931	ENSVVUG00000006934	-	95	36.765	Vulpes_vulpes
ENSGAGG00000013639	-	56	54.386	ENSXETG00000018189	smn2	93	37.410	Xenopus_tropicalis
ENSGAGG00000013639	-	82	36.522	ENSXETG00000004912	-	56	36.207	Xenopus_tropicalis
ENSGAGG00000013639	-	95	40.541	ENSXMAG00000001521	smn1	97	35.714	Xiphophorus_maculatus