EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGAGG00000015660 (Gene tree)
Gene ID: -
Gene Symbol: SMARCAL1
Alias: HARP|HHARP
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a like 1
Gene Type: protein_coding
Species: Gopherus_agassizii
Status: putative
Strand: Plus strand
Length: 70436 bases
Position: chrPPEB01001730.1:228069-298504
Accession: 11102
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAGP00000021331	ResIII	PF04851.15	1.7e-07	1	1
ENSGAGP00000021326	ResIII	PF04851.15	1.8e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAGT00000024290	SMARCAL1-201	3700	-	ENSGAGP00000021326	923 (aa)	-	-
ENSGAGT00000024296	SMARCAL1-202	3649	-	ENSGAGP00000021331	906 (aa)	-	-

Gene Model

Click here to download ENSGAGG00000015660's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAGG00000015660's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAGG00000015660	SMARCAL1	99	55.461	ENSG00000138375	SMARCAL1	99	70.625	Homo_sapiens
ENSGAGG00000015660	SMARCAL1	71	67.328	ENSAPOG00000020156	SMARCAL1	72	67.328	Acanthochromis_polyacanthus
ENSGAGG00000015660	SMARCAL1	71	68.230	ENSACIG00000001500	smarcal1	85	68.230	Amphilophus_citrinellus
ENSGAGG00000015660	SMARCAL1	71	67.328	ENSAOCG00000014266	SMARCAL1	73	67.328	Amphiprion_ocellaris
ENSGAGG00000015660	SMARCAL1	71	67.481	ENSAPEG00000015861	SMARCAL1	72	67.481	Amphiprion_percula
ENSGAGG00000015660	SMARCAL1	98	54.116	ENSATEG00000020624	SMARCAL1	92	54.116	Anabas_testudineus
ENSGAGG00000015660	SMARCAL1	99	68.030	ENSAPLG00000009864	SMARCAL1	93	68.030	Anas_platyrhynchos
ENSGAGG00000015660	SMARCAL1	99	64.989	ENSACAG00000004612	SMARCAL1	93	64.989	Anolis_carolinensis
ENSGAGG00000015660	SMARCAL1	71	67.786	ENSACLG00000015990	SMARCAL1	93	55.087	Astatotilapia_calliptera
ENSGAGG00000015660	SMARCAL1	75	76.316	ENSAMXG00000003350	smarcal1	78	76.316	Astyanax_mexicanus
ENSGAGG00000015660	SMARCAL1	99	95.082	ENSCPBG00000013599	SMARCAL1	93	95.082	Chrysemys_picta_bellii
ENSGAGG00000015660	SMARCAL1	69	48.281	ENSCING00000009308	-	100	48.281	Ciona_intestinalis
ENSGAGG00000015660	SMARCAL1	72	64.688	ENSCSEG00000010785	SMARCAL1	74	64.688	Cynoglossus_semilaevis
ENSGAGG00000015660	SMARCAL1	99	53.980	ENSCVAG00000018780	SMARCAL1	93	53.980	Cyprinodon_variegatus
ENSGAGG00000015660	SMARCAL1	58	54.857	ENSEBUG00000011906	SMARCAL1	73	54.857	Eptatretus_burgeri
ENSGAGG00000015660	SMARCAL1	71	64.885	ENSELUG00000010440	-	63	64.885	Esox_lucius
ENSGAGG00000015660	SMARCAL1	99	67.846	ENSFALG00000003981	SMARCAL1	93	67.738	Ficedula_albicollis
ENSGAGG00000015660	SMARCAL1	70	64.715	ENSFHEG00000008380	SMARCAL1	93	53.057	Fundulus_heteroclitus
ENSGAGG00000015660	SMARCAL1	54	64.220	ENSGMOG00000010034	smarcal1	90	63.514	Gadus_morhua
ENSGAGG00000015660	SMARCAL1	99	68.382	ENSGALG00000011475	RPL37A	93	68.382	Gallus_gallus
ENSGAGG00000015660	SMARCAL1	66	68.901	ENSGACG00000006073	SMARCAL1	100	68.901	Gasterosteus_aculeatus
ENSGAGG00000015660	SMARCAL1	71	67.786	ENSHBUG00000002973	smarcal1	93	54.940	Haplochromis_burtoni
ENSGAGG00000015660	SMARCAL1	72	65.309	ENSHCOG00000017921	smarcal1	79	65.309	Hippocampus_comes
ENSGAGG00000015660	SMARCAL1	71	64.915	ENSKMAG00000012023	SMARCAL1	74	64.915	Kryptolebias_marmoratus
ENSGAGG00000015660	SMARCAL1	70	64.715	ENSLBEG00000003493	smarcal1	76	64.715	Labrus_bergylta
ENSGAGG00000015660	SMARCAL1	72	62.369	ENSLBEG00000022915	smarcal1	86	62.974	Labrus_bergylta
ENSGAGG00000015660	SMARCAL1	71	67.123	ENSLACG00000010974	SMARCAL1	93	55.603	Latimeria_chalumnae
ENSGAGG00000015660	SMARCAL1	80	70.427	ENSLOCG00000009637	smarcal1	88	70.427	Lepisosteus_oculatus
ENSGAGG00000015660	SMARCAL1	99	65.663	ENSMAMG00000000828	SMARCAL1	95	65.762	Mastacembelus_armatus
ENSGAGG00000015660	SMARCAL1	71	67.634	ENSMZEG00005007660	SMARCAL1	93	54.978	Maylandia_zebra
ENSGAGG00000015660	SMARCAL1	99	67.780	ENSMGAG00000011658	SMARCAL1	92	67.780	Meleagris_gallopavo
ENSGAGG00000015660	SMARCAL1	73	61.367	ENSMMOG00000003842	smarcal1	83	61.218	Mola_mola
ENSGAGG00000015660	SMARCAL1	99	58.521	ENSMODG00000015544	SMARCAL1	92	58.521	Monodelphis_domestica
ENSGAGG00000015660	SMARCAL1	73	67.523	ENSNBRG00000016273	smarcal1	86	67.523	Neolamprologus_brichardi
ENSGAGG00000015660	SMARCAL1	99	57.680	ENSMEUG00000004395	SMARCAL1	100	57.895	Notamacropus_eugenii
ENSGAGG00000015660	SMARCAL1	71	68.092	ENSONIG00000009036	smarcal1	95	67.488	Oreochromis_niloticus
ENSGAGG00000015660	SMARCAL1	99	64.253	ENSORLG00000016455	SMARCAL1	92	64.253	Oryzias_latipes
ENSGAGG00000015660	SMARCAL1	99	64.733	ENSORLG00020001610	SMARCAL1	92	64.733	Oryzias_latipes_hni
ENSGAGG00000015660	SMARCAL1	85	56.770	ENSORLG00015001865	SMARCAL1	89	56.770	Oryzias_latipes_hsok
ENSGAGG00000015660	SMARCAL1	99	64.580	ENSOMEG00000001845	smarcal1	92	64.580	Oryzias_melastigma
ENSGAGG00000015660	SMARCAL1	74	62.990	ENSPMGG00000019092	SMARCAL1	84	58.594	Periophthalmus_magnuspinnatus
ENSGAGG00000015660	SMARCAL1	99	58.542	ENSPCIG00000022514	SMARCAL1	99	58.542	Phascolarctos_cinereus
ENSGAGG00000015660	SMARCAL1	70	65.951	ENSPFOG00000000560	SMARCAL1	93	54.022	Poecilia_formosa
ENSGAGG00000015660	SMARCAL1	70	65.798	ENSPMEG00000018146	SMARCAL1	93	53.913	Poecilia_mexicana
ENSGAGG00000015660	SMARCAL1	74	82.759	ENSPNAG00000014900	smarcal1	74	82.759	Pygocentrus_nattereri
ENSGAGG00000015660	SMARCAL1	78	66.364	ENSSHAG00000013538	SMARCAL1	79	66.364	Sarcophilus_harrisii
ENSGAGG00000015660	SMARCAL1	72	64.962	ENSSMAG00000010427	SMARCAL1	72	64.962	Scophthalmus_maximus
ENSGAGG00000015660	SMARCAL1	73	64.680	ENSSDUG00000017470	SMARCAL1	72	64.680	Seriola_dumerili
ENSGAGG00000015660	SMARCAL1	73	64.531	ENSSLDG00000007224	SMARCAL1	73	64.531	Seriola_lalandi_dorsalis
ENSGAGG00000015660	SMARCAL1	99	70.664	ENSSPUG00000015369	SMARCAL1	93	70.664	Sphenodon_punctatus
ENSGAGG00000015660	SMARCAL1	71	67.325	ENSSPAG00000003742	smarcal1	84	67.325	Stegastes_partitus
ENSGAGG00000015660	SMARCAL1	74	63.676	ENSSSCG00000035501	SMARCAL1	74	63.081	Sus_scrofa
ENSGAGG00000015660	SMARCAL1	72	77.364	ENSTGUG00000005079	SMARCAL1	94	77.364	Taeniopygia_guttata
ENSGAGG00000015660	SMARCAL1	70	59.196	ENSTRUG00000010701	SMARCAL1	72	59.841	Takifugu_rubripes
ENSGAGG00000015660	SMARCAL1	99	49.242	ENSTTRG00000009001	SMARCAL1	92	49.352	Tursiops_truncatus
ENSGAGG00000015660	SMARCAL1	99	60.991	ENSXETG00000000465	smarcal1	93	60.991	Xenopus_tropicalis