EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAGG00000016069 (Gene tree)
Gene ID: -
Gene Symbol: SNRNP200
Alias: ASCC3L1|BRR2|HELIC2|KIAA0788|RP33|U5-200KD
Full Name: small nuclear ribonucleoprotein U5 subunit 200
Gene Type: protein_coding
Species: Gopherus_agassizii
Status: putative
Strand: Minus strand
Length: 38453 bases
Position: chrPPEB01006530.1:13623-52075
Accession: 30859
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAGP00000026444	ResIII	PF04851.15	1.3e-25	1	2
ENSGAGP00000026444	ResIII	PF04851.15	1.3e-25	2	2
ENSGAGP00000026120	ResIII	PF04851.15	1.8e-25	1	2
ENSGAGP00000026120	ResIII	PF04851.15	1.8e-25	2	2
ENSGAGP00000026117	ResIII	PF04851.15	1.8e-25	1	2
ENSGAGP00000026117	ResIII	PF04851.15	1.8e-25	2	2
ENSGAGP00000026356	ResIII	PF04851.15	7.8e-24	1	2
ENSGAGP00000026356	ResIII	PF04851.15	7.8e-24	2	2
ENSGAGP00000026286	ResIII	PF04851.15	8.4e-24	1	2
ENSGAGP00000026286	ResIII	PF04851.15	8.4e-24	2	2
ENSGAGP00000026118	ResIII	PF04851.15	2.5e-16	1	1
ENSGAGP00000026124	ResIII	PF04851.15	9.9e-11	1	1
ENSGAGP00000026444	DEAD	PF00270.29	2.6e-52	1	2
ENSGAGP00000026444	DEAD	PF00270.29	2.6e-52	2	2
ENSGAGP00000026117	DEAD	PF00270.29	4.3e-52	1	2
ENSGAGP00000026117	DEAD	PF00270.29	4.3e-52	2	2
ENSGAGP00000026120	DEAD	PF00270.29	4.6e-52	1	2
ENSGAGP00000026120	DEAD	PF00270.29	4.6e-52	2	2
ENSGAGP00000026356	DEAD	PF00270.29	2.7e-49	1	2
ENSGAGP00000026356	DEAD	PF00270.29	2.7e-49	2	2
ENSGAGP00000026286	DEAD	PF00270.29	3.1e-49	1	2
ENSGAGP00000026286	DEAD	PF00270.29	3.1e-49	2	2
ENSGAGP00000026118	DEAD	PF00270.29	3.1e-36	1	2
ENSGAGP00000026118	DEAD	PF00270.29	3.1e-36	2	2
ENSGAGP00000026124	DEAD	PF00270.29	1.7e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAGT00000029967	SNRNP200-206	4587	-	ENSGAGP00000026356	1528 (aa)	-	-
ENSGAGT00000030003	SNRNP200-207	1374	-	ENSGAGP00000026391	457 (aa)	-	-
ENSGAGT00000030058	SNRNP200-208	5367	-	ENSGAGP00000026444	1788 (aa)	-	-
ENSGAGT00000029885	SNRNP200-205	4725	-	ENSGAGP00000026286	1574 (aa)	-	-
ENSGAGT00000029707	SNRNP200-203	6000	-	ENSGAGP00000026120	1999 (aa)	-	-
ENSGAGT00000029711	SNRNP200-204	1827	-	ENSGAGP00000026124	608 (aa)	-	-
ENSGAGT00000029705	SNRNP200-202	6009	-	ENSGAGP00000026118	2002 (aa)	-	-
ENSGAGT00000029704	SNRNP200-201	6171	-	ENSGAGP00000026117	2056 (aa)	-	-

Gene Model

Click here to download ENSGAGG00000016069's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAGG00000016069's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAGG00000016069	SNRNP200	93	48.224	ENSGAGG00000020794	ASCC3	84	48.811

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAGG00000016069	SNRNP200	99	97.686	ENSG00000144028	SNRNP200	99	97.862	Homo_sapiens
ENSGAGG00000016069	SNRNP200	97	98.387	ENSAPOG00000010223	snrnp200	95	90.848	Acanthochromis_polyacanthus
ENSGAGG00000016069	SNRNP200	99	97.738	ENSAMEG00000008996	SNRNP200	95	97.738	Ailuropoda_melanoleuca
ENSGAGG00000016069	SNRNP200	97	90.336	ENSACIG00000001764	snrnp200	91	93.594	Amphilophus_citrinellus
ENSGAGG00000016069	SNRNP200	97	98.387	ENSAOCG00000024593	snrnp200	95	92.972	Amphiprion_ocellaris
ENSGAGG00000016069	SNRNP200	97	90.278	ENSAPEG00000012554	snrnp200	92	94.306	Amphiprion_percula
ENSGAGG00000016069	SNRNP200	97	98.387	ENSATEG00000022522	snrnp200	95	92.771	Anabas_testudineus
ENSGAGG00000016069	SNRNP200	98	98.303	ENSAPLG00000004313	SNRNP200	95	98.303	Anas_platyrhynchos
ENSGAGG00000016069	SNRNP200	98	97.577	ENSACAG00000000434	SNRNP200	94	97.577	Anolis_carolinensis
ENSGAGG00000016069	SNRNP200	100	97.222	ENSANAG00000036625	SNRNP200	100	97.791	Aotus_nancymaae
ENSGAGG00000016069	SNRNP200	97	98.387	ENSACLG00000011188	snrnp200	95	92.570	Astatotilapia_calliptera
ENSGAGG00000016069	SNRNP200	99	90.093	ENSAMXG00000005684	snrnp200	95	91.767	Astyanax_mexicanus
ENSGAGG00000016069	SNRNP200	99	97.275	ENSBTAG00000000848	SNRNP200	95	97.275	Bos_taurus
ENSGAGG00000016069	SNRNP200	99	97.686	ENSCJAG00000007514	SNRNP200	95	97.686	Callithrix_jacchus
ENSGAGG00000016069	SNRNP200	99	96.875	ENSCAFG00020019979	SNRNP200	100	97.841	Canis_lupus_dingo
ENSGAGG00000016069	SNRNP200	99	97.481	ENSCHIG00000020611	SNRNP200	95	97.481	Capra_hircus
ENSGAGG00000016069	SNRNP200	99	97.738	ENSTSYG00000010467	SNRNP200	95	97.738	Carlito_syrichta
ENSGAGG00000016069	SNRNP200	98	97.231	ENSCAPG00000017234	SNRNP200	95	97.791	Cavia_aperea
ENSGAGG00000016069	SNRNP200	99	97.481	ENSCPOG00000006776	SNRNP200	95	97.481	Cavia_porcellus
ENSGAGG00000016069	SNRNP200	99	97.686	ENSCCAG00000033962	SNRNP200	95	97.686	Cebus_capucinus
ENSGAGG00000016069	SNRNP200	99	97.686	ENSCATG00000015790	SNRNP200	95	97.686	Cercocebus_atys
ENSGAGG00000016069	SNRNP200	99	97.481	ENSCLAG00000004116	SNRNP200	95	97.992	Chinchilla_lanigera
ENSGAGG00000016069	SNRNP200	99	97.635	ENSCSAG00000017369	SNRNP200	95	97.635	Chlorocebus_sabaeus
ENSGAGG00000016069	SNRNP200	78	97.206	ENSCHOG00000012981	-	57	97.206	Choloepus_hoffmanni
ENSGAGG00000016069	SNRNP200	100	100.000	ENSCPBG00000022571	SNRNP200	99	100.000	Chrysemys_picta_bellii
ENSGAGG00000016069	SNRNP200	99	78.571	ENSCING00000005082	-	95	79.879	Ciona_intestinalis
ENSGAGG00000016069	SNRNP200	100	97.222	ENSCANG00000033932	SNRNP200	100	97.791	Colobus_angolensis_palliatus
ENSGAGG00000016069	SNRNP200	99	97.584	ENSCGRG00001022610	Snrnp200	95	97.584	Cricetulus_griseus_chok1gshd
ENSGAGG00000016069	SNRNP200	99	96.971	ENSCGRG00000016472	Snrnp200	95	96.971	Cricetulus_griseus_crigri
ENSGAGG00000016069	SNRNP200	92	96.774	ENSCSEG00000016399	snrnp200	95	89.666	Cynoglossus_semilaevis
ENSGAGG00000016069	SNRNP200	98	96.774	ENSCVAG00000017631	snrnp200	95	92.369	Cyprinodon_variegatus
ENSGAGG00000016069	SNRNP200	99	90.283	ENSDARG00000077536	snrnp200	95	92.771	Danio_rerio
ENSGAGG00000016069	SNRNP200	99	96.144	ENSDNOG00000011227	SNRNP200	95	97.390	Dasypus_novemcinctus
ENSGAGG00000016069	SNRNP200	100	97.222	ENSDORG00000005861	Snrnp200	100	93.886	Dipodomys_ordii
ENSGAGG00000016069	SNRNP200	99	74.341	FBgn0263599	l(3)72Ab	95	78.728	Drosophila_melanogaster
ENSGAGG00000016069	SNRNP200	96	97.222	ENSETEG00000000162	SNRNP200	70	97.835	Echinops_telfairi
ENSGAGG00000016069	SNRNP200	94	75.144	ENSEBUG00000016524	snrnp200	95	81.076	Eptatretus_burgeri
ENSGAGG00000016069	SNRNP200	99	96.725	ENSEASG00005001884	SNRNP200	95	97.992	Equus_asinus_asinus
ENSGAGG00000016069	SNRNP200	99	97.738	ENSECAG00000019675	SNRNP200	95	97.750	Equus_caballus
ENSGAGG00000016069	SNRNP200	95	100.000	ENSEEUG00000012178	SNRNP200	93	100.000	Erinaceus_europaeus
ENSGAGG00000016069	SNRNP200	99	90.764	ENSELUG00000018948	snrnp200	95	93.976	Esox_lucius
ENSGAGG00000016069	SNRNP200	99	97.789	ENSFCAG00000010699	SNRNP200	95	97.789	Felis_catus
ENSGAGG00000016069	SNRNP200	93	95.171	ENSFALG00000001368	-	92	94.980	Ficedula_albicollis
ENSGAGG00000016069	SNRNP200	99	97.429	ENSFDAG00000004683	SNRNP200	95	97.429	Fukomys_damarensis
ENSGAGG00000016069	SNRNP200	98	96.774	ENSFHEG00000003786	snrnp200	95	91.365	Fundulus_heteroclitus
ENSGAGG00000016069	SNRNP200	99	89.682	ENSGMOG00000004881	snrnp200	95	92.800	Gadus_morhua
ENSGAGG00000016069	SNRNP200	98	96.774	ENSGAFG00000010807	snrnp200	95	91.968	Gambusia_affinis
ENSGAGG00000016069	SNRNP200	99	90.246	ENSGACG00000011474	snrnp200	95	91.600	Gasterosteus_aculeatus
ENSGAGG00000016069	SNRNP200	99	97.686	ENSGGOG00000005174	SNRNP200	95	97.917	Gorilla_gorilla
ENSGAGG00000016069	SNRNP200	97	87.889	ENSHBUG00000011322	snrnp200	92	90.244	Haplochromis_burtoni
ENSGAGG00000016069	SNRNP200	99	97.532	ENSHGLG00000006654	SNRNP200	95	97.532	Heterocephalus_glaber_female
ENSGAGG00000016069	SNRNP200	99	97.532	ENSHGLG00100018594	SNRNP200	95	97.532	Heterocephalus_glaber_male
ENSGAGG00000016069	SNRNP200	57	80.980	ENSIPUG00000007770	-	89	80.938	Ictalurus_punctatus
ENSGAGG00000016069	SNRNP200	99	97.686	ENSSTOG00000016351	SNRNP200	95	97.686	Ictidomys_tridecemlineatus
ENSGAGG00000016069	SNRNP200	99	97.532	ENSJJAG00000023659	Snrnp200	95	97.791	Jaculus_jaculus
ENSGAGG00000016069	SNRNP200	98	98.387	ENSKMAG00000003665	snrnp200	95	91.968	Kryptolebias_marmoratus
ENSGAGG00000016069	SNRNP200	98	96.774	ENSLBEG00000021585	snrnp200	95	90.488	Labrus_bergylta
ENSGAGG00000016069	SNRNP200	97	88.617	ENSLACG00000000226	SNRNP200	99	95.213	Latimeria_chalumnae
ENSGAGG00000016069	SNRNP200	99	91.928	ENSLOCG00000015198	snrnp200	95	93.173	Lepisosteus_oculatus
ENSGAGG00000016069	SNRNP200	99	97.429	ENSLAFG00000015626	SNRNP200	95	97.992	Loxodonta_africana
ENSGAGG00000016069	SNRNP200	99	97.635	ENSMFAG00000040174	SNRNP200	99	97.661	Macaca_fascicularis
ENSGAGG00000016069	SNRNP200	99	97.635	ENSMMUG00000023261	SNRNP200	95	97.635	Macaca_mulatta
ENSGAGG00000016069	SNRNP200	99	97.584	ENSMNEG00000032398	SNRNP200	95	97.584	Macaca_nemestrina
ENSGAGG00000016069	SNRNP200	99	97.686	ENSMLEG00000019083	SNRNP200	99	97.661	Mandrillus_leucophaeus
ENSGAGG00000016069	SNRNP200	98	98.387	ENSMAMG00000007851	snrnp200	95	91.968	Mastacembelus_armatus
ENSGAGG00000016069	SNRNP200	97	87.889	ENSMZEG00005010787	snrnp200	92	90.244	Maylandia_zebra
ENSGAGG00000016069	SNRNP200	98	96.970	ENSMGAG00000001831	SNRNP200	94	97.943	Meleagris_gallopavo
ENSGAGG00000016069	SNRNP200	99	97.635	ENSMAUG00000011825	Snrnp200	95	97.635	Mesocricetus_auratus
ENSGAGG00000016069	SNRNP200	99	97.738	ENSMICG00000004710	SNRNP200	98	97.465	Microcebus_murinus
ENSGAGG00000016069	SNRNP200	100	94.444	ENSMOCG00000011814	Snrnp200	95	97.590	Microtus_ochrogaster
ENSGAGG00000016069	SNRNP200	97	98.387	ENSMMOG00000014167	snrnp200	95	88.689	Mola_mola
ENSGAGG00000016069	SNRNP200	99	97.686	ENSMODG00000008475	SNRNP200	95	97.686	Monodelphis_domestica
ENSGAGG00000016069	SNRNP200	97	98.387	ENSMALG00000001973	snrnp200	95	92.771	Monopterus_albus
ENSGAGG00000016069	SNRNP200	99	97.481	MGP_CAROLIEiJ_G0024250	Snrnp200	95	97.481	Mus_caroli
ENSGAGG00000016069	SNRNP200	99	97.532	ENSMUSG00000003660	Snrnp200	95	97.532	Mus_musculus
ENSGAGG00000016069	SNRNP200	99	97.584	MGP_PahariEiJ_G0025695	Snrnp200	95	97.584	Mus_pahari
ENSGAGG00000016069	SNRNP200	99	97.532	MGP_SPRETEiJ_G0025170	Snrnp200	100	97.238	Mus_spretus
ENSGAGG00000016069	SNRNP200	99	97.789	ENSMPUG00000008949	SNRNP200	95	97.789	Mustela_putorius_furo
ENSGAGG00000016069	SNRNP200	99	93.830	ENSMLUG00000027511	-	95	93.830	Myotis_lucifugus
ENSGAGG00000016069	SNRNP200	99	97.225	ENSMLUG00000010493	SNRNP200	95	97.225	Myotis_lucifugus
ENSGAGG00000016069	SNRNP200	99	97.686	ENSNGAG00000021993	Snrnp200	95	97.686	Nannospalax_galili
ENSGAGG00000016069	SNRNP200	99	89.235	ENSNBRG00000017960	snrnp200	99	93.594	Neolamprologus_brichardi
ENSGAGG00000016069	SNRNP200	96	96.320	ENSNLEG00000000025	SNRNP200	95	97.787	Nomascus_leucogenys
ENSGAGG00000016069	SNRNP200	98	100.000	ENSMEUG00000010532	SNRNP200	73	100.000	Notamacropus_eugenii
ENSGAGG00000016069	SNRNP200	98	95.312	ENSOPRG00000015464	SNRNP200	91	97.791	Ochotona_princeps
ENSGAGG00000016069	SNRNP200	99	97.532	ENSODEG00000008366	SNRNP200	95	97.992	Octodon_degus
ENSGAGG00000016069	SNRNP200	97	98.387	ENSONIG00000010714	snrnp200	95	92.169	Oreochromis_niloticus
ENSGAGG00000016069	SNRNP200	99	97.532	ENSOCUG00000009864	SNRNP200	95	97.532	Oryctolagus_cuniculus
ENSGAGG00000016069	SNRNP200	99	90.488	ENSORLG00000012286	snrnp200	95	90.488	Oryzias_latipes
ENSGAGG00000016069	SNRNP200	99	90.591	ENSORLG00020004648	snrnp200	95	90.591	Oryzias_latipes_hni
ENSGAGG00000016069	SNRNP200	99	90.540	ENSORLG00015019114	snrnp200	99	90.540	Oryzias_latipes_hsok
ENSGAGG00000016069	SNRNP200	97	92.857	ENSOMEG00000011834	snrnp200	95	90.643	Oryzias_melastigma
ENSGAGG00000016069	SNRNP200	99	97.738	ENSOGAG00000006879	SNRNP200	95	97.738	Otolemur_garnettii
ENSGAGG00000016069	SNRNP200	99	96.351	ENSOARG00000013949	SNRNP200	95	96.351	Ovis_aries
ENSGAGG00000016069	SNRNP200	99	97.686	ENSPPAG00000041559	SNRNP200	95	97.686	Pan_paniscus
ENSGAGG00000016069	SNRNP200	99	97.789	ENSPPRG00000004435	SNRNP200	95	97.789	Panthera_pardus
ENSGAGG00000016069	SNRNP200	99	97.326	ENSPTIG00000006380	SNRNP200	95	97.326	Panthera_tigris_altaica
ENSGAGG00000016069	SNRNP200	99	97.686	ENSPTRG00000012230	SNRNP200	95	97.686	Pan_troglodytes
ENSGAGG00000016069	SNRNP200	99	97.686	ENSPANG00000006017	SNRNP200	95	97.686	Papio_anubis
ENSGAGG00000016069	SNRNP200	99	90.848	ENSPKIG00000014762	snrnp200	95	93.574	Paramormyrops_kingsleyae
ENSGAGG00000016069	SNRNP200	99	98.252	ENSPSIG00000008580	SNRNP200	95	98.252	Pelodiscus_sinensis
ENSGAGG00000016069	SNRNP200	96	96.781	ENSPEMG00000020700	-	86	96.781	Peromyscus_maniculatus_bairdii
ENSGAGG00000016069	SNRNP200	99	97.789	ENSPCIG00000023050	SNRNP200	95	97.789	Phascolarctos_cinereus
ENSGAGG00000016069	SNRNP200	98	96.774	ENSPFOG00000015110	snrnp200	95	92.169	Poecilia_formosa
ENSGAGG00000016069	SNRNP200	96	90.655	ENSPLAG00000006711	snrnp200	91	92.704	Poecilia_latipinna
ENSGAGG00000016069	SNRNP200	96	90.595	ENSPMEG00000021166	snrnp200	91	92.704	Poecilia_mexicana
ENSGAGG00000016069	SNRNP200	98	95.161	ENSPREG00000008875	snrnp200	95	92.169	Poecilia_reticulata
ENSGAGG00000016069	SNRNP200	99	97.686	ENSPPYG00000012068	SNRNP200	95	97.686	Pongo_abelii
ENSGAGG00000016069	SNRNP200	95	100.000	ENSPCAG00000008536	SNRNP200	83	100.000	Procavia_capensis
ENSGAGG00000016069	SNRNP200	99	97.686	ENSPCOG00000024608	SNRNP200	95	97.686	Propithecus_coquereli
ENSGAGG00000016069	SNRNP200	97	95.918	ENSPVAG00000005860	SNRNP200	88	97.087	Pteropus_vampyrus
ENSGAGG00000016069	SNRNP200	97	98.387	ENSPNYG00000017476	snrnp200	95	90.675	Pundamilia_nyererei
ENSGAGG00000016069	SNRNP200	99	87.533	ENSPNAG00000010998	snrnp200	95	92.369	Pygocentrus_nattereri
ENSGAGG00000016069	SNRNP200	99	97.635	ENSRNOG00000012157	Snrnp200	95	97.635	Rattus_norvegicus
ENSGAGG00000016069	SNRNP200	99	97.686	ENSRBIG00000044690	-	95	97.686	Rhinopithecus_bieti
ENSGAGG00000016069	SNRNP200	99	97.686	ENSRROG00000037952	-	95	97.686	Rhinopithecus_roxellana
ENSGAGG00000016069	SNRNP200	99	97.686	ENSSBOG00000035471	SNRNP200	97	97.640	Saimiri_boliviensis_boliviensis
ENSGAGG00000016069	SNRNP200	98	96.855	ENSSHAG00000000758	SNRNP200	94	97.789	Sarcophilus_harrisii
ENSGAGG00000016069	SNRNP200	95	96.552	ENSSFOG00015018826	snrnp200	95	93.373	Scleropages_formosus
ENSGAGG00000016069	SNRNP200	97	96.774	ENSSMAG00000005463	snrnp200	95	92.169	Scophthalmus_maximus
ENSGAGG00000016069	SNRNP200	97	98.387	ENSSDUG00000021410	snrnp200	95	92.771	Seriola_dumerili
ENSGAGG00000016069	SNRNP200	97	98.387	ENSSLDG00000010884	snrnp200	95	92.369	Seriola_lalandi_dorsalis
ENSGAGG00000016069	SNRNP200	94	96.703	ENSSARG00000010728	SNRNP200	91	96.703	Sorex_araneus
ENSGAGG00000016069	SNRNP200	99	98.046	ENSSPUG00000003726	-	95	98.046	Sphenodon_punctatus
ENSGAGG00000016069	SNRNP200	97	98.387	ENSSPAG00000001842	snrnp200	95	92.972	Stegastes_partitus
ENSGAGG00000016069	SNRNP200	99	97.584	ENSSSCG00000008127	SNRNP200	95	97.584	Sus_scrofa
ENSGAGG00000016069	SNRNP200	98	87.139	ENSTGUG00000014475	-	94	87.139	Taeniopygia_guttata
ENSGAGG00000016069	SNRNP200	97	96.774	ENSTRUG00000001307	snrnp200	95	92.570	Takifugu_rubripes
ENSGAGG00000016069	SNRNP200	98	98.387	ENSTNIG00000004320	snrnp200	100	82.505	Tetraodon_nigroviridis
ENSGAGG00000016069	SNRNP200	82	100.000	ENSTBEG00000003329	-	61	100.000	Tupaia_belangeri
ENSGAGG00000016069	SNRNP200	99	97.635	ENSTTRG00000004983	SNRNP200	96	97.635	Tursiops_truncatus
ENSGAGG00000016069	SNRNP200	94	85.233	ENSUAMG00000008395	-	95	88.723	Ursus_americanus
ENSGAGG00000016069	SNRNP200	99	97.789	ENSUMAG00000012385	SNRNP200	95	97.789	Ursus_maritimus
ENSGAGG00000016069	SNRNP200	96	97.143	ENSVPAG00000006434	SNRNP200	65	100.000	Vicugna_pacos
ENSGAGG00000016069	SNRNP200	99	97.728	ENSVVUG00000026247	SNRNP200	95	97.728	Vulpes_vulpes
ENSGAGG00000016069	SNRNP200	96	100.000	ENSXETG00000001243	snrnp200	95	95.010	Xenopus_tropicalis
ENSGAGG00000016069	SNRNP200	98	90.252	ENSXMAG00000002058	snrnp200	91	93.950	Xiphophorus_maculatus