EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGAGG00000016131 (Gene tree)
Gene ID: -
Gene Symbol: SMG5
Alias: EST1B|KIAA1089|LPTS-RP1|LPTSRP1|RP11-54H19.7|SMG-5
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Gopherus_agassizii
Status: putative
Strand: Plus strand
Length: 44685 bases
Position: chrPPEB01000938.1:285636-330320
Accession: 24644
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAGP00000021984	EST1	PF10374.9	9.4e-25	1	1
ENSGAGP00000021988	EST1	PF10374.9	9.4e-25	1	1
ENSGAGP00000021984	EST1_DNA_bind	PF10373.9	2.7e-39	1	2
ENSGAGP00000021984	EST1_DNA_bind	PF10373.9	2.7e-39	2	2
ENSGAGP00000021988	EST1_DNA_bind	PF10373.9	2.7e-39	1	2
ENSGAGP00000021988	EST1_DNA_bind	PF10373.9	2.7e-39	2	2
ENSGAGP00000021984	PIN_4	PF13638.6	3.5e-06	1	1
ENSGAGP00000021988	PIN_4	PF13638.6	3.5e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAGT00000025048	SMG5-201	3238	-	ENSGAGP00000021984	1052 (aa)	-	-
ENSGAGT00000025052	SMG5-202	3238	-	ENSGAGP00000021988	1052 (aa)	-	-

Gene Model

Click here to download ENSGAGG00000016131's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAGG00000016131's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAGG00000016131	SMG5	100	79.487	ENSG00000198952	SMG5	100	79.772	Homo_sapiens
ENSGAGG00000016131	SMG5	99	65.870	ENSAPOG00000019690	smg5	99	66.095	Acanthochromis_polyacanthus
ENSGAGG00000016131	SMG5	98	76.602	ENSAMEG00000014458	SMG5	100	76.893	Ailuropoda_melanoleuca
ENSGAGG00000016131	SMG5	99	65.733	ENSACIG00000001353	smg5	99	66.446	Amphilophus_citrinellus
ENSGAGG00000016131	SMG5	99	63.498	ENSAOCG00000019483	smg5	99	63.693	Amphiprion_ocellaris
ENSGAGG00000016131	SMG5	99	64.672	ENSAPEG00000022949	smg5	99	65.687	Amphiprion_percula
ENSGAGG00000016131	SMG5	99	64.306	ENSATEG00000005348	smg5	99	65.941	Anabas_testudineus
ENSGAGG00000016131	SMG5	98	91.042	ENSAPLG00000010263	SMG5	100	91.042	Anas_platyrhynchos
ENSGAGG00000016131	SMG5	100	79.392	ENSANAG00000032899	SMG5	100	79.487	Aotus_nancymaae
ENSGAGG00000016131	SMG5	99	65.108	ENSACLG00000009311	smg5	100	66.164	Astatotilapia_calliptera
ENSGAGG00000016131	SMG5	99	43.359	ENSBTAG00000021747	-	99	43.359	Bos_taurus
ENSGAGG00000016131	SMG5	100	78.843	ENSBTAG00000009435	SMG5	100	78.748	Bos_taurus
ENSGAGG00000016131	SMG5	100	79.772	ENSCJAG00000005684	SMG5	100	79.962	Callithrix_jacchus
ENSGAGG00000016131	SMG5	100	78.273	ENSCAFG00000016839	SMG5	100	78.748	Canis_familiaris
ENSGAGG00000016131	SMG5	100	78.273	ENSCAFG00020006061	SMG5	100	78.748	Canis_lupus_dingo
ENSGAGG00000016131	SMG5	100	79.012	ENSCHIG00000007709	SMG5	100	78.843	Capra_hircus
ENSGAGG00000016131	SMG5	99	43.893	ENSCHIG00000006323	-	99	43.893	Capra_hircus
ENSGAGG00000016131	SMG5	100	79.202	ENSTSYG00000004099	SMG5	100	79.412	Carlito_syrichta
ENSGAGG00000016131	SMG5	95	59.579	ENSCAPG00000003631	SMG5	100	60.160	Cavia_aperea
ENSGAGG00000016131	SMG5	100	78.897	ENSCPOG00000015696	SMG5	100	79.431	Cavia_porcellus
ENSGAGG00000016131	SMG5	100	79.392	ENSCCAG00000027409	SMG5	100	79.487	Cebus_capucinus
ENSGAGG00000016131	SMG5	100	79.297	ENSCATG00000030539	SMG5	100	79.487	Cercocebus_atys
ENSGAGG00000016131	SMG5	100	78.992	ENSCLAG00000003983	SMG5	100	79.621	Chinchilla_lanigera
ENSGAGG00000016131	SMG5	100	79.297	ENSCSAG00000002120	SMG5	100	79.487	Chlorocebus_sabaeus
ENSGAGG00000016131	SMG5	53	84.838	ENSCHOG00000008741	-	57	84.838	Choloepus_hoffmanni
ENSGAGG00000016131	SMG5	94	98.376	ENSCPBG00000025848	SMG5	100	98.376	Chrysemys_picta_bellii
ENSGAGG00000016131	SMG5	100	75.594	ENSCANG00000029208	SMG5	100	75.783	Colobus_angolensis_palliatus
ENSGAGG00000016131	SMG5	100	78.802	ENSCGRG00001006336	Smg5	100	78.578	Cricetulus_griseus_chok1gshd
ENSGAGG00000016131	SMG5	98	78.773	ENSCGRG00000005111	Smg5	100	78.523	Cricetulus_griseus_crigri
ENSGAGG00000016131	SMG5	99	63.973	ENSCSEG00000014220	smg5	99	64.326	Cynoglossus_semilaevis
ENSGAGG00000016131	SMG5	99	59.906	ENSCVAG00000000529	smg5	99	60.377	Cyprinodon_variegatus
ENSGAGG00000016131	SMG5	100	75.214	ENSDNOG00000000051	SMG5	100	75.878	Dasypus_novemcinctus
ENSGAGG00000016131	SMG5	93	35.066	ENSDNOG00000039862	-	100	35.168	Dasypus_novemcinctus
ENSGAGG00000016131	SMG5	100	78.673	ENSDORG00000010382	Smg5	100	78.863	Dipodomys_ordii
ENSGAGG00000016131	SMG5	88	36.765	FBgn0019890	Smg5	61	36.765	Drosophila_melanogaster
ENSGAGG00000016131	SMG5	83	90.291	ENSETEG00000010336	SMG5	91	90.291	Echinops_telfairi
ENSGAGG00000016131	SMG5	100	79.392	ENSEASG00005019122	SMG5	100	79.696	Equus_asinus_asinus
ENSGAGG00000016131	SMG5	100	79.297	ENSECAG00000001389	SMG5	100	79.487	Equus_caballus
ENSGAGG00000016131	SMG5	69	95.389	ENSEEUG00000012690	SMG5	75	95.389	Erinaceus_europaeus
ENSGAGG00000016131	SMG5	99	66.382	ENSELUG00000012585	smg5	99	66.572	Esox_lucius
ENSGAGG00000016131	SMG5	100	77.799	ENSFCAG00000011783	SMG5	100	78.368	Felis_catus
ENSGAGG00000016131	SMG5	60	86.572	ENSFALG00000001166	-	100	89.643	Ficedula_albicollis
ENSGAGG00000016131	SMG5	98	77.745	ENSFDAG00000017388	SMG5	100	77.745	Fukomys_damarensis
ENSGAGG00000016131	SMG5	94	61.858	ENSFHEG00000013939	smg5	98	61.957	Fundulus_heteroclitus
ENSGAGG00000016131	SMG5	99	62.467	ENSGMOG00000007310	smg5	99	63.556	Gadus_morhua
ENSGAGG00000016131	SMG5	100	86.027	ENSGALG00000029918	-	100	86.027	Gallus_gallus
ENSGAGG00000016131	SMG5	72	75.947	ENSGAFG00000021691	smg5	99	58.639	Gambusia_affinis
ENSGAGG00000016131	SMG5	99	62.148	ENSGACG00000013142	smg5	99	63.387	Gasterosteus_aculeatus
ENSGAGG00000016131	SMG5	100	79.487	ENSGGOG00000010932	SMG5	100	79.677	Gorilla_gorilla
ENSGAGG00000016131	SMG5	99	65.453	ENSHBUG00000008654	smg5	100	66.478	Haplochromis_burtoni
ENSGAGG00000016131	SMG5	100	77.441	ENSHGLG00000019152	SMG5	100	77.462	Heterocephalus_glaber_female
ENSGAGG00000016131	SMG5	90	78.059	ENSHGLG00100015948	SMG5	99	78.082	Heterocephalus_glaber_male
ENSGAGG00000016131	SMG5	93	61.787	ENSHCOG00000010229	smg5	97	61.217	Hippocampus_comes
ENSGAGG00000016131	SMG5	99	63.546	ENSIPUG00000006624	Smg5	99	64.600	Ictalurus_punctatus
ENSGAGG00000016131	SMG5	100	79.677	ENSSTOG00000001780	SMG5	100	79.487	Ictidomys_tridecemlineatus
ENSGAGG00000016131	SMG5	100	78.558	ENSJJAG00000022763	Smg5	100	78.368	Jaculus_jaculus
ENSGAGG00000016131	SMG5	99	65.359	ENSLBEG00000002145	smg5	99	64.546	Labrus_bergylta
ENSGAGG00000016131	SMG5	100	68.685	ENSLACG00000010521	SMG5	100	68.774	Latimeria_chalumnae
ENSGAGG00000016131	SMG5	99	78.660	ENSLAFG00000006241	SMG5	99	78.756	Loxodonta_africana
ENSGAGG00000016131	SMG5	100	79.297	ENSMFAG00000045357	SMG5	100	79.487	Macaca_fascicularis
ENSGAGG00000016131	SMG5	100	79.297	ENSMMUG00000000090	SMG5	100	79.487	Macaca_mulatta
ENSGAGG00000016131	SMG5	100	79.202	ENSMNEG00000044425	SMG5	100	79.392	Macaca_nemestrina
ENSGAGG00000016131	SMG5	100	73.415	ENSMLEG00000041192	SMG5	100	73.605	Mandrillus_leucophaeus
ENSGAGG00000016131	SMG5	99	62.862	ENSMAMG00000010683	smg5	100	63.025	Mastacembelus_armatus
ENSGAGG00000016131	SMG5	64	58.866	ENSMZEG00005016543	smg5	100	60.058	Maylandia_zebra
ENSGAGG00000016131	SMG5	99	63.163	ENSMZEG00005015815	smg5	100	63.790	Maylandia_zebra
ENSGAGG00000016131	SMG5	100	78.137	ENSMAUG00000010381	Smg5	100	78.137	Mesocricetus_auratus
ENSGAGG00000016131	SMG5	100	79.487	ENSMICG00000002257	SMG5	100	80.057	Microcebus_murinus
ENSGAGG00000016131	SMG5	100	77.788	ENSMOCG00000016590	Smg5	100	77.514	Microtus_ochrogaster
ENSGAGG00000016131	SMG5	99	61.181	ENSMMOG00000017199	smg5	99	61.717	Mola_mola
ENSGAGG00000016131	SMG5	78	37.653	ENSMODG00000004735	-	94	37.653	Monodelphis_domestica
ENSGAGG00000016131	SMG5	78	37.528	ENSMODG00000004532	-	90	37.528	Monodelphis_domestica
ENSGAGG00000016131	SMG5	97	34.006	ENSMODG00000004511	-	99	34.041	Monodelphis_domestica
ENSGAGG00000016131	SMG5	88	80.865	ENSMODG00000016901	SMG5	98	81.210	Monodelphis_domestica
ENSGAGG00000016131	SMG5	76	38.035	ENSMODG00000010675	-	91	38.035	Monodelphis_domestica
ENSGAGG00000016131	SMG5	99	61.796	ENSMALG00000010375	smg5	99	62.060	Monopterus_albus
ENSGAGG00000016131	SMG5	100	78.327	MGP_CAROLIEiJ_G0025163	Smg5	100	96.648	Mus_caroli
ENSGAGG00000016131	SMG5	100	78.612	ENSMUSG00000001415	Smg5	99	96.648	Mus_musculus
ENSGAGG00000016131	SMG5	100	78.538	MGP_PahariEiJ_G0026606	Smg5	100	96.648	Mus_pahari
ENSGAGG00000016131	SMG5	100	78.422	MGP_SPRETEiJ_G0026104	Smg5	100	96.648	Mus_spretus
ENSGAGG00000016131	SMG5	94	76.369	ENSMPUG00000004546	SMG5	100	75.963	Mustela_putorius_furo
ENSGAGG00000016131	SMG5	100	78.294	ENSMLUG00000008518	SMG5	100	78.578	Myotis_lucifugus
ENSGAGG00000016131	SMG5	100	78.748	ENSNGAG00000020706	Smg5	100	79.032	Nannospalax_galili
ENSGAGG00000016131	SMG5	84	56.049	ENSNGAG00000012101	-	98	43.353	Nannospalax_galili
ENSGAGG00000016131	SMG5	97	62.536	ENSNBRG00000004332	smg5	98	62.439	Neolamprologus_brichardi
ENSGAGG00000016131	SMG5	100	79.167	ENSNLEG00000012439	SMG5	100	79.356	Nomascus_leucogenys
ENSGAGG00000016131	SMG5	100	79.791	ENSMEUG00000012834	SMG5	100	80.095	Notamacropus_eugenii
ENSGAGG00000016131	SMG5	100	77.778	ENSOPRG00000009152	SMG5	100	78.273	Ochotona_princeps
ENSGAGG00000016131	SMG5	100	78.992	ENSODEG00000012237	SMG5	100	79.278	Octodon_degus
ENSGAGG00000016131	SMG5	99	62.566	ENSONIG00000008632	smg5	99	64.141	Oreochromis_niloticus
ENSGAGG00000016131	SMG5	90	38.866	ENSOCUG00000023338	-	99	39.135	Oryctolagus_cuniculus
ENSGAGG00000016131	SMG5	98	78.891	ENSOCUG00000012886	SMG5	100	79.183	Oryctolagus_cuniculus
ENSGAGG00000016131	SMG5	99	61.744	ENSORLG00000016239	smg5	99	64.585	Oryzias_latipes
ENSGAGG00000016131	SMG5	99	64.373	ENSORLG00020013127	smg5	99	66.258	Oryzias_latipes_hni
ENSGAGG00000016131	SMG5	99	64.286	ENSORLG00015019014	smg5	99	66.165	Oryzias_latipes_hsok
ENSGAGG00000016131	SMG5	82	60.870	ENSOMEG00000021330	smg5	92	62.766	Oryzias_melastigma
ENSGAGG00000016131	SMG5	100	78.538	ENSOGAG00000004966	SMG5	100	78.632	Otolemur_garnettii
ENSGAGG00000016131	SMG5	99	43.916	ENSOARG00000011963	-	99	43.425	Ovis_aries
ENSGAGG00000016131	SMG5	100	78.843	ENSOARG00000005778	SMG5	100	78.748	Ovis_aries
ENSGAGG00000016131	SMG5	100	79.297	ENSPPAG00000011996	SMG5	100	79.487	Pan_paniscus
ENSGAGG00000016131	SMG5	98	77.454	ENSPPRG00000011901	SMG5	100	78.037	Panthera_pardus
ENSGAGG00000016131	SMG5	97	72.718	ENSPTIG00000007892	SMG5	98	73.307	Panthera_tigris_altaica
ENSGAGG00000016131	SMG5	100	79.297	ENSPTRG00000049282	-	100	79.487	Pan_troglodytes
ENSGAGG00000016131	SMG5	100	79.297	ENSPTRG00000023925	SMG5	100	79.487	Pan_troglodytes
ENSGAGG00000016131	SMG5	100	79.297	ENSPANG00000011201	SMG5	100	79.487	Papio_anubis
ENSGAGG00000016131	SMG5	99	66.349	ENSPKIG00000009402	smg5	99	66.730	Paramormyrops_kingsleyae
ENSGAGG00000016131	SMG5	98	96.981	ENSPSIG00000015198	SMG5	100	94.563	Pelodiscus_sinensis
ENSGAGG00000016131	SMG5	99	61.483	ENSPMGG00000010465	smg5	99	61.922	Periophthalmus_magnuspinnatus
ENSGAGG00000016131	SMG5	100	78.253	ENSPEMG00000001819	Smg5	100	78.199	Peromyscus_maniculatus_bairdii
ENSGAGG00000016131	SMG5	98	48.351	ENSPMAG00000000410	smg5	99	49.624	Petromyzon_marinus
ENSGAGG00000016131	SMG5	100	80.645	ENSPCIG00000018938	SMG5	100	80.777	Phascolarctos_cinereus
ENSGAGG00000016131	SMG5	99	65.817	ENSPMEG00000014105	smg5	99	66.258	Poecilia_mexicana
ENSGAGG00000016131	SMG5	100	79.582	ENSPPYG00000000723	SMG5	100	79.772	Pongo_abelii
ENSGAGG00000016131	SMG5	76	86.188	ENSPCAG00000008412	SMG5	81	86.188	Procavia_capensis
ENSGAGG00000016131	SMG5	100	79.962	ENSPCOG00000004741	SMG5	100	80.437	Propithecus_coquereli
ENSGAGG00000016131	SMG5	100	71.035	ENSPVAG00000016748	SMG5	100	71.130	Pteropus_vampyrus
ENSGAGG00000016131	SMG5	99	61.942	ENSPNYG00000013397	smg5	99	63.740	Pundamilia_nyererei
ENSGAGG00000016131	SMG5	99	63.006	ENSPNAG00000028363	smg5	99	64.176	Pygocentrus_nattereri
ENSGAGG00000016131	SMG5	100	78.232	ENSRNOG00000019590	Smg5	100	78.199	Rattus_norvegicus
ENSGAGG00000016131	SMG5	100	79.012	ENSRBIG00000027428	SMG5	100	79.202	Rhinopithecus_bieti
ENSGAGG00000016131	SMG5	100	78.917	ENSRROG00000030035	SMG5	100	79.107	Rhinopithecus_roxellana
ENSGAGG00000016131	SMG5	100	79.392	ENSSBOG00000033339	SMG5	100	79.867	Saimiri_boliviensis_boliviensis
ENSGAGG00000016131	SMG5	75	43.909	ENSSHAG00000009572	-	81	43.909	Sarcophilus_harrisii
ENSGAGG00000016131	SMG5	78	37.018	ENSSHAG00000000561	-	98	36.524	Sarcophilus_harrisii
ENSGAGG00000016131	SMG5	55	38.725	ENSSHAG00000000935	-	84	38.725	Sarcophilus_harrisii
ENSGAGG00000016131	SMG5	98	80.193	ENSSHAG00000014163	SMG5	100	80.309	Sarcophilus_harrisii
ENSGAGG00000016131	SMG5	99	66.825	ENSSFOG00015024175	smg5	99	66.261	Scleropages_formosus
ENSGAGG00000016131	SMG5	99	61.972	ENSSMAG00000013059	smg5	99	63.869	Scophthalmus_maximus
ENSGAGG00000016131	SMG5	99	62.072	ENSSDUG00000007122	smg5	99	63.652	Seriola_dumerili
ENSGAGG00000016131	SMG5	99	62.467	ENSSLDG00000011418	smg5	99	64.053	Seriola_lalandi_dorsalis
ENSGAGG00000016131	SMG5	91	68.134	ENSSARG00000012484	SMG5	100	68.134	Sorex_araneus
ENSGAGG00000016131	SMG5	94	89.372	ENSSPUG00000002260	SMG5	100	89.777	Sphenodon_punctatus
ENSGAGG00000016131	SMG5	99	65.023	ENSSPAG00000014266	smg5	99	65.047	Stegastes_partitus
ENSGAGG00000016131	SMG5	100	79.487	ENSSSCG00000006490	-	100	79.602	Sus_scrofa
ENSGAGG00000016131	SMG5	99	61.759	ENSSSCG00000039308	-	99	62.428	Sus_scrofa
ENSGAGG00000016131	SMG5	100	88.805	ENSTGUG00000003748	-	100	88.899	Taeniopygia_guttata
ENSGAGG00000016131	SMG5	99	64.144	ENSTRUG00000012580	smg5	99	64.773	Takifugu_rubripes
ENSGAGG00000016131	SMG5	99	65.750	ENSTNIG00000010303	smg5	99	65.747	Tetraodon_nigroviridis
ENSGAGG00000016131	SMG5	56	97.044	ENSTBEG00000002777	SMG5	59	97.044	Tupaia_belangeri
ENSGAGG00000016131	SMG5	100	74.739	ENSTTRG00000001401	SMG5	100	74.573	Tursiops_truncatus
ENSGAGG00000016131	SMG5	100	77.419	ENSUAMG00000013721	SMG5	100	77.704	Ursus_americanus
ENSGAGG00000016131	SMG5	98	73.547	ENSUMAG00000018041	SMG5	99	72.815	Ursus_maritimus
ENSGAGG00000016131	SMG5	98	70.497	ENSVPAG00000009446	SMG5	99	70.691	Vicugna_pacos
ENSGAGG00000016131	SMG5	100	78.368	ENSVVUG00000005887	SMG5	100	78.463	Vulpes_vulpes
ENSGAGG00000016131	SMG5	77	68.659	ENSXETG00000033791	SMG5	99	68.293	Xenopus_tropicalis
ENSGAGG00000016131	SMG5	57	78.998	ENSXCOG00000004379	smg5	95	71.429	Xiphophorus_couchianus
ENSGAGG00000016131	SMG5	99	64.467	ENSXMAG00000013499	smg5	99	65.728	Xiphophorus_maculatus