EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAGG00000016508 (Gene tree)
Gene ID: -
Gene Symbol: A1CF
Alias: ACF|ACF64|ACF65|APOBEC1CF|ASP
Full Name: APOBEC1 complementation factor
Gene Type: protein_coding
Species: Gopherus_agassizii
Status: putative
Strand: Plus strand
Length: 33441 bases
Position: chrPPEB01010012.1:1542-34982
Accession: 24086
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAGP00000022510	DND1_DSRM	PF14709.7	7.6e-25	1	1
ENSGAGP00000022510	RRM_1	PF00076.22	7.3e-41	1	3
ENSGAGP00000022510	RRM_1	PF00076.22	7.3e-41	2	3
ENSGAGP00000022510	RRM_1	PF00076.22	7.3e-41	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAGT00000025641	A1CF-201	1731	-	ENSGAGP00000022510	576 (aa)	-	-

Gene Model

Click here to download ENSGAGG00000016508's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAGG00000016508's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAGG00000016508	A1CF	85	71.731	ENSGAGG00000002019	RBM46	73	71.731
ENSGAGG00000016508	A1CF	72	59.102	ENSGAGG00000020051	RBM47	67	59.102

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAGG00000016508	A1CF	98	87.831	ENSG00000148584	A1CF	94	88.434	Homo_sapiens
ENSGAGG00000016508	A1CF	98	72.222	ENSAPOG00000008259	a1cf	96	72.569	Acanthochromis_polyacanthus
ENSGAGG00000016508	A1CF	97	87.321	ENSAMEG00000000523	A1CF	94	87.857	Ailuropoda_melanoleuca
ENSGAGG00000016508	A1CF	97	74.784	ENSACIG00000008632	a1cf	94	76.166	Amphilophus_citrinellus
ENSGAGG00000016508	A1CF	98	72.774	ENSAOCG00000023744	a1cf	91	81.707	Amphiprion_ocellaris
ENSGAGG00000016508	A1CF	98	73.973	ENSAPEG00000009537	a1cf	96	75.171	Amphiprion_percula
ENSGAGG00000016508	A1CF	98	75.212	ENSATEG00000013720	a1cf	96	76.740	Anabas_testudineus
ENSGAGG00000016508	A1CF	97	92.998	ENSAPLG00000002964	A1CF	94	92.998	Anas_platyrhynchos
ENSGAGG00000016508	A1CF	97	87.433	ENSACAG00000015269	A1CF	94	87.433	Anolis_carolinensis
ENSGAGG00000016508	A1CF	98	88.380	ENSANAG00000019974	A1CF	94	88.360	Aotus_nancymaae
ENSGAGG00000016508	A1CF	98	72.806	ENSACLG00000017428	a1cf	96	74.871	Astatotilapia_calliptera
ENSGAGG00000016508	A1CF	92	77.206	ENSAMXG00000018180	a1cf	93	77.206	Astyanax_mexicanus
ENSGAGG00000016508	A1CF	97	86.856	ENSBTAG00000021195	A1CF	94	88.521	Bos_taurus
ENSGAGG00000016508	A1CF	97	88.455	ENSCJAG00000005045	A1CF	94	88.434	Callithrix_jacchus
ENSGAGG00000016508	A1CF	97	88.372	ENSCAFG00000015581	A1CF	94	88.909	Canis_familiaris
ENSGAGG00000016508	A1CF	98	87.633	ENSCAFG00020026421	A1CF	98	90.541	Canis_lupus_dingo
ENSGAGG00000016508	A1CF	97	88.099	ENSCHIG00000020411	A1CF	94	88.099	Capra_hircus
ENSGAGG00000016508	A1CF	98	87.434	ENSTSYG00000001755	A1CF	100	86.964	Carlito_syrichta
ENSGAGG00000016508	A1CF	88	92.500	ENSCAPG00000017386	A1CF	90	91.020	Cavia_aperea
ENSGAGG00000016508	A1CF	97	87.722	ENSCPOG00000009807	A1CF	94	87.900	Cavia_porcellus
ENSGAGG00000016508	A1CF	98	88.339	ENSCCAG00000018168	A1CF	94	88.770	Cebus_capucinus
ENSGAGG00000016508	A1CF	98	86.140	ENSCATG00000043715	A1CF	94	87.925	Cercocebus_atys
ENSGAGG00000016508	A1CF	97	87.589	ENSCLAG00000010424	A1CF	94	87.589	Chinchilla_lanigera
ENSGAGG00000016508	A1CF	97	89.107	ENSCSAG00000007032	A1CF	94	89.643	Chlorocebus_sabaeus
ENSGAGG00000016508	A1CF	98	85.439	ENSCHOG00000009089	A1CF	95	85.965	Choloepus_hoffmanni
ENSGAGG00000016508	A1CF	97	99.102	ENSCPBG00000026464	A1CF	94	99.102	Chrysemys_picta_bellii
ENSGAGG00000016508	A1CF	97	88.750	ENSCANG00000038032	A1CF	94	89.286	Colobus_angolensis_palliatus
ENSGAGG00000016508	A1CF	97	86.679	ENSCGRG00001017413	A1cf	94	86.856	Cricetulus_griseus_chok1gshd
ENSGAGG00000016508	A1CF	97	86.501	ENSCGRG00000017332	A1cf	94	86.501	Cricetulus_griseus_crigri
ENSGAGG00000016508	A1CF	98	76.298	ENSCSEG00000002361	a1cf	96	77.855	Cynoglossus_semilaevis
ENSGAGG00000016508	A1CF	98	73.175	ENSCVAG00000010520	a1cf	96	75.042	Cyprinodon_variegatus
ENSGAGG00000016508	A1CF	97	77.856	ENSDARG00000002968	a1cf	95	79.262	Danio_rerio
ENSGAGG00000016508	A1CF	97	87.389	ENSDNOG00000002829	A1CF	94	87.567	Dasypus_novemcinctus
ENSGAGG00000016508	A1CF	79	94.922	ENSETEG00000012527	A1CF	78	94.922	Echinops_telfairi
ENSGAGG00000016508	A1CF	98	87.587	ENSEASG00005012924	A1CF	98	87.762	Equus_asinus_asinus
ENSGAGG00000016508	A1CF	97	87.788	ENSECAG00000010424	A1CF	94	87.965	Equus_caballus
ENSGAGG00000016508	A1CF	80	76.445	ENSEEUG00000000013	A1CF	100	76.445	Erinaceus_europaeus
ENSGAGG00000016508	A1CF	98	79.335	ENSELUG00000003159	a1cf	96	79.335	Esox_lucius
ENSGAGG00000016508	A1CF	97	86.702	ENSFCAG00000011179	A1CF	94	87.057	Felis_catus
ENSGAGG00000016508	A1CF	97	90.305	ENSFALG00000013183	A1CF	94	90.305	Ficedula_albicollis
ENSGAGG00000016508	A1CF	97	85.613	ENSFDAG00000019371	A1CF	94	85.790	Fukomys_damarensis
ENSGAGG00000016508	A1CF	89	72.897	ENSFHEG00000019652	a1cf	90	74.953	Fundulus_heteroclitus
ENSGAGG00000016508	A1CF	98	71.084	ENSGMOG00000018943	a1cf	96	71.084	Gadus_morhua
ENSGAGG00000016508	A1CF	100	90.815	ENSGALG00000003765	A1CF	99	90.815	Gallus_gallus
ENSGAGG00000016508	A1CF	98	69.231	ENSGAFG00000014868	a1cf	96	69.744	Gambusia_affinis
ENSGAGG00000016508	A1CF	97	73.657	ENSGACG00000010241	a1cf	95	74.697	Gasterosteus_aculeatus
ENSGAGG00000016508	A1CF	98	87.654	ENSGGOG00000009670	A1CF	94	88.256	Gorilla_gorilla
ENSGAGG00000016508	A1CF	98	73.639	ENSHBUG00000021959	a1cf	96	75.680	Haplochromis_burtoni
ENSGAGG00000016508	A1CF	97	87.567	ENSHGLG00000008955	A1CF	94	87.922	Heterocephalus_glaber_female
ENSGAGG00000016508	A1CF	97	87.034	ENSHGLG00100000518	A1CF	94	87.389	Heterocephalus_glaber_male
ENSGAGG00000016508	A1CF	91	72.080	ENSHCOG00000017669	a1cf	95	73.150	Hippocampus_comes
ENSGAGG00000016508	A1CF	87	82.087	ENSIPUG00000010367	a1cf	94	80.114	Ictalurus_punctatus
ENSGAGG00000016508	A1CF	98	75.973	ENSKMAG00000006568	a1cf	96	77.157	Kryptolebias_marmoratus
ENSGAGG00000016508	A1CF	97	74.744	ENSLBEG00000020994	a1cf	95	76.451	Labrus_bergylta
ENSGAGG00000016508	A1CF	97	82.679	ENSLACG00000008061	A1CF	94	82.679	Latimeria_chalumnae
ENSGAGG00000016508	A1CF	97	83.601	ENSLOCG00000006302	a1cf	94	83.779	Lepisosteus_oculatus
ENSGAGG00000016508	A1CF	97	88.099	ENSLAFG00000015462	A1CF	94	88.277	Loxodonta_africana
ENSGAGG00000016508	A1CF	98	86.491	ENSMFAG00000035948	A1CF	94	88.302	Macaca_fascicularis
ENSGAGG00000016508	A1CF	98	88.319	ENSMMUG00000007077	A1CF	95	88.850	Macaca_mulatta
ENSGAGG00000016508	A1CF	98	87.965	ENSMNEG00000031454	A1CF	94	88.826	Macaca_nemestrina
ENSGAGG00000016508	A1CF	97	88.393	ENSMLEG00000037223	A1CF	94	88.929	Mandrillus_leucophaeus
ENSGAGG00000016508	A1CF	98	71.160	ENSMAMG00000010402	a1cf	96	73.891	Mastacembelus_armatus
ENSGAGG00000016508	A1CF	98	77.233	ENSMZEG00005013245	a1cf	96	78.284	Maylandia_zebra
ENSGAGG00000016508	A1CF	97	92.832	ENSMGAG00000001507	A1CF	94	92.832	Meleagris_gallopavo
ENSGAGG00000016508	A1CF	97	85.613	ENSMAUG00000007422	A1cf	94	85.968	Mesocricetus_auratus
ENSGAGG00000016508	A1CF	98	86.609	ENSMICG00000003377	A1CF	96	86.783	Microcebus_murinus
ENSGAGG00000016508	A1CF	97	86.679	ENSMOCG00000021536	A1cf	94	86.856	Microtus_ochrogaster
ENSGAGG00000016508	A1CF	90	69.963	ENSMMOG00000009422	a1cf	89	71.082	Mola_mola
ENSGAGG00000016508	A1CF	88	88.281	ENSMODG00000016478	A1CF	94	88.281	Monodelphis_domestica
ENSGAGG00000016508	A1CF	98	71.930	ENSMALG00000012992	a1cf	95	71.930	Monopterus_albus
ENSGAGG00000016508	A1CF	97	85.968	MGP_CAROLIEiJ_G0022873	A1cf	94	86.146	Mus_caroli
ENSGAGG00000016508	A1CF	97	85.968	ENSMUSG00000052595	A1cf	99	89.527	Mus_musculus
ENSGAGG00000016508	A1CF	97	85.613	MGP_PahariEiJ_G0014366	A1cf	94	85.613	Mus_pahari
ENSGAGG00000016508	A1CF	97	85.968	MGP_SPRETEiJ_G0023792	A1cf	94	86.146	Mus_spretus
ENSGAGG00000016508	A1CF	97	81.429	ENSMPUG00000016971	A1CF	94	82.143	Mustela_putorius_furo
ENSGAGG00000016508	A1CF	97	87.211	ENSMLUG00000016071	A1CF	94	87.567	Myotis_lucifugus
ENSGAGG00000016508	A1CF	97	86.856	ENSNGAG00000015136	A1cf	94	87.211	Nannospalax_galili
ENSGAGG00000016508	A1CF	98	73.469	ENSNBRG00000001712	a1cf	96	75.510	Neolamprologus_brichardi
ENSGAGG00000016508	A1CF	97	88.455	ENSNLEG00000012028	A1CF	99	85.254	Nomascus_leucogenys
ENSGAGG00000016508	A1CF	97	89.068	ENSMEUG00000015909	A1CF	100	89.068	Notamacropus_eugenii
ENSGAGG00000016508	A1CF	86	79.108	ENSOPRG00000010667	A1CF	94	76.879	Ochotona_princeps
ENSGAGG00000016508	A1CF	98	74.320	ENSONIG00000019105	a1cf	96	75.510	Oreochromis_niloticus
ENSGAGG00000016508	A1CF	75	88.940	ENSOANG00000007360	A1CF	92	88.940	Ornithorhynchus_anatinus
ENSGAGG00000016508	A1CF	97	84.752	ENSOCUG00000011587	A1CF	94	84.929	Oryctolagus_cuniculus
ENSGAGG00000016508	A1CF	97	75.130	ENSORLG00000013342	a1cf	95	75.130	Oryzias_latipes
ENSGAGG00000016508	A1CF	97	75.475	ENSORLG00020000586	a1cf	95	76.339	Oryzias_latipes_hni
ENSGAGG00000016508	A1CF	97	75.475	ENSORLG00015018569	a1cf	95	76.339	Oryzias_latipes_hsok
ENSGAGG00000016508	A1CF	98	74.744	ENSOMEG00000013531	a1cf	96	74.744	Oryzias_melastigma
ENSGAGG00000016508	A1CF	97	88.393	ENSOGAG00000012884	A1CF	94	88.750	Otolemur_garnettii
ENSGAGG00000016508	A1CF	97	88.277	ENSOARG00000013695	A1CF	94	88.277	Ovis_aries
ENSGAGG00000016508	A1CF	98	87.654	ENSPPAG00000028115	A1CF	93	92.408	Pan_paniscus
ENSGAGG00000016508	A1CF	97	87.321	ENSPPRG00000012180	A1CF	94	87.679	Panthera_pardus
ENSGAGG00000016508	A1CF	97	87.321	ENSPTIG00000021223	A1CF	94	87.679	Panthera_tigris_altaica
ENSGAGG00000016508	A1CF	99	86.655	ENSPTRG00000002508	A1CF	99	86.828	Pan_troglodytes
ENSGAGG00000016508	A1CF	98	86.491	ENSPANG00000021988	A1CF	94	88.302	Papio_anubis
ENSGAGG00000016508	A1CF	97	80.142	ENSPKIG00000025176	a1cf	94	80.319	Paramormyrops_kingsleyae
ENSGAGG00000016508	A1CF	97	95.512	ENSPSIG00000010318	A1CF	94	95.512	Pelodiscus_sinensis
ENSGAGG00000016508	A1CF	95	65.699	ENSPMGG00000013359	a1cf	93	66.968	Periophthalmus_magnuspinnatus
ENSGAGG00000016508	A1CF	97	87.567	ENSPEMG00000015021	A1cf	94	87.567	Peromyscus_maniculatus_bairdii
ENSGAGG00000016508	A1CF	97	88.889	ENSPCIG00000002175	A1CF	94	88.889	Phascolarctos_cinereus
ENSGAGG00000016508	A1CF	98	74.873	ENSPFOG00000006683	a1cf	96	76.740	Poecilia_formosa
ENSGAGG00000016508	A1CF	98	74.703	ENSPFOG00000007437	-	96	76.570	Poecilia_formosa
ENSGAGG00000016508	A1CF	98	73.514	ENSPLAG00000001210	-	96	75.382	Poecilia_latipinna
ENSGAGG00000016508	A1CF	98	73.514	ENSPLAG00000000026	a1cf	96	75.382	Poecilia_latipinna
ENSGAGG00000016508	A1CF	98	66.610	ENSPMEG00000000921	a1cf	95	68.484	Poecilia_mexicana
ENSGAGG00000016508	A1CF	98	67.802	ENSPMEG00000015529	-	96	69.676	Poecilia_mexicana
ENSGAGG00000016508	A1CF	98	75.212	ENSPREG00000016298	a1cf	96	76.910	Poecilia_reticulata
ENSGAGG00000016508	A1CF	97	87.034	ENSPPYG00000002819	A1CF	94	87.211	Pongo_abelii
ENSGAGG00000016508	A1CF	81	67.019	ENSPCAG00000006463	A1CF	79	67.019	Procavia_capensis
ENSGAGG00000016508	A1CF	97	87.589	ENSPCOG00000024172	A1CF	94	87.766	Propithecus_coquereli
ENSGAGG00000016508	A1CF	98	74.830	ENSPNYG00000017944	a1cf	96	76.871	Pundamilia_nyererei
ENSGAGG00000016508	A1CF	97	78.609	ENSPNAG00000007704	a1cf	95	78.783	Pygocentrus_nattereri
ENSGAGG00000016508	A1CF	97	84.902	ENSRNOG00000033195	A1cf	94	85.080	Rattus_norvegicus
ENSGAGG00000016508	A1CF	97	82.384	ENSRBIG00000042892	A1CF	100	86.051	Rhinopithecus_bieti
ENSGAGG00000016508	A1CF	97	88.750	ENSRROG00000041398	A1CF	99	87.857	Rhinopithecus_roxellana
ENSGAGG00000016508	A1CF	98	88.225	ENSSBOG00000021930	A1CF	100	86.328	Saimiri_boliviensis_boliviensis
ENSGAGG00000016508	A1CF	97	89.286	ENSSHAG00000005096	A1CF	94	89.286	Sarcophilus_harrisii
ENSGAGG00000016508	A1CF	97	78.223	ENSSFOG00015011774	a1cf	95	78.571	Scleropages_formosus
ENSGAGG00000016508	A1CF	98	75.722	ENSSMAG00000013271	a1cf	96	76.401	Scophthalmus_maximus
ENSGAGG00000016508	A1CF	98	75.130	ENSSDUG00000013930	a1cf	96	76.339	Seriola_dumerili
ENSGAGG00000016508	A1CF	98	69.072	ENSSLDG00000004290	a1cf	96	69.416	Seriola_lalandi_dorsalis
ENSGAGG00000016508	A1CF	97	77.168	ENSSARG00000005940	A1CF	95	77.168	Sorex_araneus
ENSGAGG00000016508	A1CF	98	91.021	ENSSPUG00000006797	A1CF	95	91.021	Sphenodon_punctatus
ENSGAGG00000016508	A1CF	97	89.343	ENSSSCG00000010431	A1CF	94	89.343	Sus_scrofa
ENSGAGG00000016508	A1CF	97	90.619	ENSTGUG00000005090	A1CF	94	90.619	Taeniopygia_guttata
ENSGAGG00000016508	A1CF	98	74.660	ENSTRUG00000001982	a1cf	96	74.660	Takifugu_rubripes
ENSGAGG00000016508	A1CF	98	74.746	ENSTNIG00000003580	a1cf	96	75.424	Tetraodon_nigroviridis
ENSGAGG00000016508	A1CF	97	82.416	ENSTTRG00000013190	A1CF	93	82.416	Tursiops_truncatus
ENSGAGG00000016508	A1CF	97	86.071	ENSUAMG00000020065	A1CF	94	86.429	Ursus_americanus
ENSGAGG00000016508	A1CF	98	86.749	ENSUMAG00000011162	A1CF	99	87.102	Ursus_maritimus
ENSGAGG00000016508	A1CF	89	83.716	ENSVPAG00000006130	A1CF	86	83.716	Vicugna_pacos
ENSGAGG00000016508	A1CF	97	87.657	ENSVVUG00000002504	A1CF	94	88.889	Vulpes_vulpes
ENSGAGG00000016508	A1CF	97	80.036	ENSXETG00000006611	a1cf	94	80.036	Xenopus_tropicalis
ENSGAGG00000016508	A1CF	98	74.872	ENSXCOG00000003302	a1cf	96	76.239	Xiphophorus_couchianus
ENSGAGG00000016508	A1CF	98	75.939	ENSXMAG00000016703	a1cf	96	77.436	Xiphophorus_maculatus