EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGAGG00000016878 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Gopherus_agassizii
Status: putative
Strand: Plus strand
Length: 24742 bases
Position: chrPPEB01001908.1:246-24987
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAGP00000023000	PRP4	PF08799.11	2.5e-13	1	1
ENSGAGP00000022999	PRP4	PF08799.11	2.6e-13	1	1
ENSGAGP00000023000	Prp18	PF02840.15	2.8e-62	1	1
ENSGAGP00000022999	Prp18	PF02840.15	3.1e-62	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAGT00000026214	-	1151	-	ENSGAGP00000022999	351 (aa)	-	-
ENSGAGT00000026215	-	1124	-	ENSGAGP00000023000	342 (aa)	-	-

Gene Model

Click here to download ENSGAGG00000016878's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAGG00000016878's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAGG00000016878	-	100	92.690	ENSG00000165630	PRPF18	100	92.690	Homo_sapiens
ENSGAGG00000016878	-	100	85.088	ENSAPOG00000024177	prpf18	100	85.088	Acanthochromis_polyacanthus
ENSGAGG00000016878	-	100	92.105	ENSAMEG00000013591	-	100	92.105	Ailuropoda_melanoleuca
ENSGAGG00000016878	-	100	84.503	ENSACIG00000001186	prpf18	100	84.503	Amphilophus_citrinellus
ENSGAGG00000016878	-	98	84.776	ENSAOCG00000006572	prpf18	94	83.041	Amphiprion_ocellaris
ENSGAGG00000016878	-	100	85.088	ENSAPEG00000004564	prpf18	100	85.088	Amphiprion_percula
ENSGAGG00000016878	-	100	83.333	ENSATEG00000000303	prpf18	100	83.333	Anabas_testudineus
ENSGAGG00000016878	-	99	93.235	ENSAPLG00000003387	-	99	93.235	Anas_platyrhynchos
ENSGAGG00000016878	-	100	91.860	ENSACAG00000000818	-	100	91.860	Anolis_carolinensis
ENSGAGG00000016878	-	100	92.398	ENSANAG00000037445	-	100	92.398	Aotus_nancymaae
ENSGAGG00000016878	-	100	84.503	ENSACLG00000026296	prpf18	100	84.503	Astatotilapia_calliptera
ENSGAGG00000016878	-	100	84.615	ENSAMXG00000012848	prpf18	100	84.286	Astyanax_mexicanus
ENSGAGG00000016878	-	100	91.813	ENSBTAG00000017244	PRPF18	100	91.813	Bos_taurus
ENSGAGG00000016878	-	98	38.636	WBGene00009320	F32B6.3	97	37.931	Caenorhabditis_elegans
ENSGAGG00000016878	-	100	92.398	ENSCJAG00000009432	-	100	92.398	Callithrix_jacchus
ENSGAGG00000016878	-	100	92.105	ENSCAFG00000004735	-	100	92.105	Canis_familiaris
ENSGAGG00000016878	-	100	92.105	ENSCAFG00020007712	-	100	92.105	Canis_lupus_dingo
ENSGAGG00000016878	-	100	91.813	ENSCHIG00000000499	-	100	91.813	Capra_hircus
ENSGAGG00000016878	-	100	92.398	ENSTSYG00000003517	-	100	92.398	Carlito_syrichta
ENSGAGG00000016878	-	100	92.690	ENSCPOG00000021069	-	100	92.690	Cavia_porcellus
ENSGAGG00000016878	-	100	92.398	ENSCCAG00000036822	-	100	92.398	Cebus_capucinus
ENSGAGG00000016878	-	100	81.871	ENSCATG00000016633	-	100	81.871	Cercocebus_atys
ENSGAGG00000016878	-	100	92.105	ENSCLAG00000011770	-	100	92.105	Chinchilla_lanigera
ENSGAGG00000016878	-	100	92.308	ENSCSAG00000013109	-	100	92.308	Chlorocebus_sabaeus
ENSGAGG00000016878	-	100	95.068	ENSCPBG00000003100	-	100	95.068	Chrysemys_picta_bellii
ENSGAGG00000016878	-	99	54.942	ENSCING00000020481	-	97	54.070	Ciona_intestinalis
ENSGAGG00000016878	-	99	55.331	ENSCSAVG00000010546	-	99	54.913	Ciona_savignyi
ENSGAGG00000016878	-	100	92.398	ENSCANG00000034900	-	100	92.398	Colobus_angolensis_palliatus
ENSGAGG00000016878	-	100	92.982	ENSCGRG00001023665	Prpf18	100	92.982	Cricetulus_griseus_chok1gshd
ENSGAGG00000016878	-	100	92.982	ENSCGRG00000014690	Prpf18	100	92.982	Cricetulus_griseus_crigri
ENSGAGG00000016878	-	100	81.871	ENSCSEG00000005536	prpf18	99	81.871	Cynoglossus_semilaevis
ENSGAGG00000016878	-	100	83.626	ENSCVAG00000012401	prpf18	100	83.626	Cyprinodon_variegatus
ENSGAGG00000016878	-	100	84.795	ENSDARG00000058306	prpf18	100	84.795	Danio_rerio
ENSGAGG00000016878	-	100	92.398	ENSDNOG00000035607	-	100	92.398	Dasypus_novemcinctus
ENSGAGG00000016878	-	100	91.813	ENSDORG00000000858	Prpf18	100	91.813	Dipodomys_ordii
ENSGAGG00000016878	-	99	51.327	FBgn0027784	Prp18	98	51.327	Drosophila_melanogaster
ENSGAGG00000016878	-	100	82.456	ENSETEG00000015060	-	100	82.456	Echinops_telfairi
ENSGAGG00000016878	-	100	68.012	ENSEBUG00000016502	prpf18	99	67.630	Eptatretus_burgeri
ENSGAGG00000016878	-	100	92.398	ENSEASG00005019373	-	100	92.398	Equus_asinus_asinus
ENSGAGG00000016878	-	100	92.398	ENSECAG00000006997	PRPF18	100	92.398	Equus_caballus
ENSGAGG00000016878	-	92	57.278	ENSEEUG00000001171	-	100	57.278	Erinaceus_europaeus
ENSGAGG00000016878	-	100	82.216	ENSELUG00000022190	prpf18	100	82.216	Esox_lucius
ENSGAGG00000016878	-	100	92.105	ENSFCAG00000004436	-	100	92.105	Felis_catus
ENSGAGG00000016878	-	93	93.846	ENSFALG00000001912	-	97	93.846	Ficedula_albicollis
ENSGAGG00000016878	-	99	60.580	ENSFDAG00000010713	-	97	60.580	Fukomys_damarensis
ENSGAGG00000016878	-	93	94.984	ENSFDAG00000014026	-	99	94.984	Fukomys_damarensis
ENSGAGG00000016878	-	80	88.278	ENSFHEG00000020125	prpf18	98	88.390	Fundulus_heteroclitus
ENSGAGG00000016878	-	99	79.472	ENSGMOG00000012210	prpf18	99	79.472	Gadus_morhua
ENSGAGG00000016878	-	100	94.302	ENSGALG00000043593	-	100	94.302	Gallus_gallus
ENSGAGG00000016878	-	100	83.041	ENSGAFG00000006034	prpf18	100	83.041	Gambusia_affinis
ENSGAGG00000016878	-	100	80.409	ENSGACG00000012232	prpf18	100	80.409	Gasterosteus_aculeatus
ENSGAGG00000016878	-	93	91.692	ENSGGOG00000025188	-	96	92.089	Gorilla_gorilla
ENSGAGG00000016878	-	100	84.503	ENSHBUG00000010264	prpf18	100	84.503	Haplochromis_burtoni
ENSGAGG00000016878	-	100	92.105	ENSHGLG00000018534	PRPF18	100	92.105	Heterocephalus_glaber_female
ENSGAGG00000016878	-	93	94.671	ENSHGLG00100012161	-	98	94.671	Heterocephalus_glaber_male
ENSGAGG00000016878	-	100	83.333	ENSHCOG00000015987	prpf18	100	83.333	Hippocampus_comes
ENSGAGG00000016878	-	100	82.153	ENSIPUG00000007432	prpf18	100	82.720	Ictalurus_punctatus
ENSGAGG00000016878	-	100	92.398	ENSSTOG00000008735	-	100	92.398	Ictidomys_tridecemlineatus
ENSGAGG00000016878	-	100	92.690	ENSJJAG00000024041	-	100	92.690	Jaculus_jaculus
ENSGAGG00000016878	-	100	67.930	ENSJJAG00000015191	-	100	67.930	Jaculus_jaculus
ENSGAGG00000016878	-	100	82.164	ENSKMAG00000012124	prpf18	100	82.164	Kryptolebias_marmoratus
ENSGAGG00000016878	-	97	81.250	ENSLBEG00000028466	prpf18	99	81.250	Labrus_bergylta
ENSGAGG00000016878	-	100	88.596	ENSLACG00000009885	prpf18	100	88.596	Latimeria_chalumnae
ENSGAGG00000016878	-	100	91.228	ENSLOCG00000016736	prpf18	100	91.228	Lepisosteus_oculatus
ENSGAGG00000016878	-	100	92.690	ENSLAFG00000007753	-	100	92.690	Loxodonta_africana
ENSGAGG00000016878	-	100	92.690	ENSMFAG00000000540	-	100	92.690	Macaca_fascicularis
ENSGAGG00000016878	-	100	92.690	ENSMMUG00000015071	PRPF18	100	92.690	Macaca_mulatta
ENSGAGG00000016878	-	100	92.690	ENSMNEG00000024679	-	100	92.690	Macaca_nemestrina
ENSGAGG00000016878	-	100	77.485	ENSMLEG00000031715	-	100	77.485	Mandrillus_leucophaeus
ENSGAGG00000016878	-	100	83.041	ENSMAMG00000006610	prpf18	100	83.041	Mastacembelus_armatus
ENSGAGG00000016878	-	100	84.503	ENSMZEG00005019392	prpf18	100	84.503	Maylandia_zebra
ENSGAGG00000016878	-	100	94.152	ENSMGAG00000005023	-	100	94.152	Meleagris_gallopavo
ENSGAGG00000016878	-	100	92.398	ENSMICG00000006572	-	100	92.398	Microcebus_murinus
ENSGAGG00000016878	-	100	92.690	ENSMOCG00000021468	Prpf18	100	92.690	Microtus_ochrogaster
ENSGAGG00000016878	-	100	84.503	ENSMMOG00000013012	prpf18	100	84.503	Mola_mola
ENSGAGG00000016878	-	96	90.237	ENSMODG00000016902	-	92	90.237	Monodelphis_domestica
ENSGAGG00000016878	-	100	82.164	ENSMODG00000024043	-	100	82.164	Monodelphis_domestica
ENSGAGG00000016878	-	100	78.261	ENSMALG00000005486	prpf18	100	78.551	Monopterus_albus
ENSGAGG00000016878	-	100	92.398	MGP_CAROLIEiJ_G0023143	Prpf18	100	98.630	Mus_caroli
ENSGAGG00000016878	-	100	92.105	ENSMUSG00000039449	Prpf18	100	98.630	Mus_musculus
ENSGAGG00000016878	-	100	92.398	MGP_PahariEiJ_G0019203	Prpf18	100	98.630	Mus_pahari
ENSGAGG00000016878	-	100	92.105	MGP_SPRETEiJ_G0024061	Prpf18	100	98.630	Mus_spretus
ENSGAGG00000016878	-	100	92.398	ENSMPUG00000000938	-	100	92.398	Mustela_putorius_furo
ENSGAGG00000016878	-	100	92.105	ENSMLUG00000009200	-	100	92.105	Myotis_lucifugus
ENSGAGG00000016878	-	100	92.105	ENSNGAG00000012500	-	100	92.105	Nannospalax_galili
ENSGAGG00000016878	-	67	90.435	ENSNGAG00000023550	-	82	90.435	Nannospalax_galili
ENSGAGG00000016878	-	100	84.503	ENSNBRG00000001778	prpf18	100	84.503	Neolamprologus_brichardi
ENSGAGG00000016878	-	100	92.690	ENSNLEG00000012186	-	100	92.690	Nomascus_leucogenys
ENSGAGG00000016878	-	100	65.205	ENSMEUG00000005032	-	100	65.205	Notamacropus_eugenii
ENSGAGG00000016878	-	77	73.585	ENSOPRG00000002153	-	100	73.585	Ochotona_princeps
ENSGAGG00000016878	-	100	91.813	ENSODEG00000003770	-	100	91.813	Octodon_degus
ENSGAGG00000016878	-	98	83.582	ENSONIG00000014854	prpf18	96	83.582	Oreochromis_niloticus
ENSGAGG00000016878	-	100	92.105	ENSOANG00000015404	-	100	92.105	Ornithorhynchus_anatinus
ENSGAGG00000016878	-	100	92.398	ENSOCUG00000027756	-	96	93.272	Oryctolagus_cuniculus
ENSGAGG00000016878	-	100	81.714	ENSORLG00000010293	prpf18	100	81.714	Oryzias_latipes
ENSGAGG00000016878	-	100	83.041	ENSORLG00020001530	prpf18	100	83.041	Oryzias_latipes_hni
ENSGAGG00000016878	-	100	82.749	ENSORLG00015013705	prpf18	100	82.749	Oryzias_latipes_hsok
ENSGAGG00000016878	-	100	84.795	ENSOMEG00000009167	prpf18	100	84.795	Oryzias_melastigma
ENSGAGG00000016878	-	100	91.813	ENSOGAG00000007294	-	100	91.813	Otolemur_garnettii
ENSGAGG00000016878	-	100	91.453	ENSOARG00000006243	-	100	91.453	Ovis_aries
ENSGAGG00000016878	-	100	92.690	ENSPPAG00000041959	-	100	92.690	Pan_paniscus
ENSGAGG00000016878	-	100	92.105	ENSPPRG00000000107	-	100	92.105	Panthera_pardus
ENSGAGG00000016878	-	100	92.398	ENSPTIG00000021094	-	100	92.398	Panthera_tigris_altaica
ENSGAGG00000016878	-	100	92.690	ENSPTRG00000002306	PRPF18	100	92.690	Pan_troglodytes
ENSGAGG00000016878	-	100	92.398	ENSPANG00000023346	-	100	92.398	Papio_anubis
ENSGAGG00000016878	-	86	98.113	ENSPKIG00000014128	prpf18	96	83.191	Paramormyrops_kingsleyae
ENSGAGG00000016878	-	100	96.491	ENSPSIG00000016064	-	100	96.491	Pelodiscus_sinensis
ENSGAGG00000016878	-	100	78.363	ENSPMGG00000016486	prpf18	100	78.363	Periophthalmus_magnuspinnatus
ENSGAGG00000016878	-	100	92.690	ENSPEMG00000013704	Prpf18	100	92.690	Peromyscus_maniculatus_bairdii
ENSGAGG00000016878	-	100	74.277	ENSPMAG00000000204	prpf18	100	74.277	Petromyzon_marinus
ENSGAGG00000016878	-	93	92.923	ENSPCIG00000012963	-	99	93.354	Phascolarctos_cinereus
ENSGAGG00000016878	-	100	81.714	ENSPFOG00000017611	prpf18	100	81.714	Poecilia_formosa
ENSGAGG00000016878	-	100	83.041	ENSPLAG00000000369	prpf18	100	83.041	Poecilia_latipinna
ENSGAGG00000016878	-	100	83.041	ENSPMEG00000005183	prpf18	100	83.041	Poecilia_mexicana
ENSGAGG00000016878	-	100	82.456	ENSPREG00000015232	prpf18	100	82.456	Poecilia_reticulata
ENSGAGG00000016878	-	100	92.398	ENSPPYG00000002101	PRPF18	100	92.398	Pongo_abelii
ENSGAGG00000016878	-	100	74.854	ENSPCAG00000010833	-	100	74.854	Procavia_capensis
ENSGAGG00000016878	-	100	86.550	ENSPCOG00000013057	-	100	86.550	Propithecus_coquereli
ENSGAGG00000016878	-	100	55.556	ENSPVAG00000002947	-	100	55.556	Pteropus_vampyrus
ENSGAGG00000016878	-	100	84.211	ENSPNYG00000003554	prpf18	100	84.211	Pundamilia_nyererei
ENSGAGG00000016878	-	100	84.615	ENSPNAG00000023151	prpf18	100	84.615	Pygocentrus_nattereri
ENSGAGG00000016878	-	100	92.398	ENSRNOG00000018396	Prpf18	100	92.398	Rattus_norvegicus
ENSGAGG00000016878	-	100	92.105	ENSRBIG00000028028	-	100	92.105	Rhinopithecus_bieti
ENSGAGG00000016878	-	100	92.398	ENSRROG00000040695	-	100	92.398	Rhinopithecus_roxellana
ENSGAGG00000016878	-	100	92.398	ENSSBOG00000034482	-	100	92.398	Saimiri_boliviensis_boliviensis
ENSGAGG00000016878	-	100	93.567	ENSSHAG00000016463	-	100	93.567	Sarcophilus_harrisii
ENSGAGG00000016878	-	100	76.023	ENSSHAG00000009669	-	100	76.023	Sarcophilus_harrisii
ENSGAGG00000016878	-	77	44.151	ENSSFOG00015021154	-	89	48.498	Scleropages_formosus
ENSGAGG00000016878	-	98	83.478	ENSSFOG00015022118	prpf18	100	77.522	Scleropages_formosus
ENSGAGG00000016878	-	100	81.579	ENSSMAG00000005308	prpf18	100	81.579	Scophthalmus_maximus
ENSGAGG00000016878	-	100	83.918	ENSSDUG00000015428	prpf18	100	83.918	Seriola_dumerili
ENSGAGG00000016878	-	100	83.918	ENSSLDG00000023989	prpf18	100	83.918	Seriola_lalandi_dorsalis
ENSGAGG00000016878	-	100	62.573	ENSSARG00000005307	-	100	62.573	Sorex_araneus
ENSGAGG00000016878	-	100	94.152	ENSSPUG00000002619	-	100	94.152	Sphenodon_punctatus
ENSGAGG00000016878	-	100	83.918	ENSSPAG00000019502	prpf18	100	83.918	Stegastes_partitus
ENSGAGG00000016878	-	100	92.105	ENSSSCG00000026354	-	100	92.105	Sus_scrofa
ENSGAGG00000016878	-	100	94.152	ENSTGUG00000002286	-	100	94.152	Taeniopygia_guttata
ENSGAGG00000016878	-	100	81.579	ENSTRUG00000011278	prpf18	100	81.579	Takifugu_rubripes
ENSGAGG00000016878	-	100	83.918	ENSTNIG00000000911	prpf18	100	83.918	Tetraodon_nigroviridis
ENSGAGG00000016878	-	80	100.000	ENSTBEG00000013011	-	79	100.000	Tupaia_belangeri
ENSGAGG00000016878	-	100	92.982	ENSTTRG00000011117	PRPF18	100	92.982	Tursiops_truncatus
ENSGAGG00000016878	-	91	95.177	ENSUAMG00000001815	-	93	95.177	Ursus_americanus
ENSGAGG00000016878	-	100	87.427	ENSUMAG00000012329	-	100	87.427	Ursus_maritimus
ENSGAGG00000016878	-	100	86.550	ENSVPAG00000011486	-	100	86.550	Vicugna_pacos
ENSGAGG00000016878	-	100	92.105	ENSVVUG00000005453	-	100	92.105	Vulpes_vulpes
ENSGAGG00000016878	-	100	82.029	ENSXETG00000024057	prpf18	100	82.029	Xenopus_tropicalis
ENSGAGG00000016878	-	100	83.140	ENSXCOG00000020414	prpf18	100	83.140	Xiphophorus_couchianus
ENSGAGG00000016878	-	100	83.333	ENSXMAG00000004713	prpf18	91	83.333	Xiphophorus_maculatus