EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGAGG00000017478 (Gene tree)
Gene ID: -
Gene Symbol: SF3B1
Alias: Hsh155|PRPF10|Prp10|SAP155|SF3b155
Full Name: splicing factor 3b subunit 1
Gene Type: protein_coding
Species: Gopherus_agassizii
Status: putative
Strand: Minus strand
Length: 39372 bases
Position: chrPPEB01008041.1:25278-64649
Accession: 10768
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAGP00000023881	SF3b1	PF08920.10	5.4e-47	1	1
ENSGAGP00000023885	SF3b1	PF08920.10	5.4e-47	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAGT00000027201	SF3B1-201	4425	-	ENSGAGP00000023881	1310 (aa)	-	-
ENSGAGT00000027205	SF3B1-202	4357	-	ENSGAGP00000023885	1328 (aa)	-	-

Gene Model

Click here to download ENSGAGG00000017478's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAGG00000017478's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAGG00000017478	SF3B1	100	98.553	ENSG00000115524	SF3B1	100	98.553	Homo_sapiens
ENSGAGG00000017478	SF3B1	100	92.976	ENSAPOG00000011894	sf3b1	100	92.976	Acanthochromis_polyacanthus
ENSGAGG00000017478	SF3B1	99	99.151	ENSAMEG00000013809	SF3B1	99	99.151	Ailuropoda_melanoleuca
ENSGAGG00000017478	SF3B1	100	92.570	ENSACIG00000020910	sf3b1	97	92.570	Amphilophus_citrinellus
ENSGAGG00000017478	SF3B1	100	92.976	ENSAOCG00000004478	sf3b1	100	92.976	Amphiprion_ocellaris
ENSGAGG00000017478	SF3B1	100	92.976	ENSAPEG00000012937	sf3b1	100	92.976	Amphiprion_percula
ENSGAGG00000017478	SF3B1	100	93.348	ENSATEG00000020435	sf3b1	100	93.348	Anabas_testudineus
ENSGAGG00000017478	SF3B1	99	99.536	ENSAPLG00000003993	SF3B1	99	99.536	Anas_platyrhynchos
ENSGAGG00000017478	SF3B1	100	98.474	ENSACAG00000009612	SF3B1	100	98.474	Anolis_carolinensis
ENSGAGG00000017478	SF3B1	100	98.553	ENSANAG00000021577	SF3B1	100	99.396	Aotus_nancymaae
ENSGAGG00000017478	SF3B1	100	92.215	ENSACLG00000023470	sf3b1	100	92.215	Astatotilapia_calliptera
ENSGAGG00000017478	SF3B1	100	93.429	ENSAMXG00000002219	sf3b1	100	93.429	Astyanax_mexicanus
ENSGAGG00000017478	SF3B1	100	98.477	ENSBTAG00000008915	SF3B1	100	98.477	Bos_taurus
ENSGAGG00000017478	SF3B1	97	66.616	WBGene00011605	sftb-1	98	66.616	Caenorhabditis_elegans
ENSGAGG00000017478	SF3B1	100	98.553	ENSCJAG00000003902	SF3B1	100	98.553	Callithrix_jacchus
ENSGAGG00000017478	SF3B1	100	98.553	ENSCAFG00000010826	SF3B1	100	98.553	Canis_familiaris
ENSGAGG00000017478	SF3B1	100	98.553	ENSCAFG00020004750	SF3B1	100	98.553	Canis_lupus_dingo
ENSGAGG00000017478	SF3B1	100	98.477	ENSCHIG00000015226	SF3B1	100	98.477	Capra_hircus
ENSGAGG00000017478	SF3B1	100	98.477	ENSTSYG00000009214	SF3B1	100	98.477	Carlito_syrichta
ENSGAGG00000017478	SF3B1	99	98.923	ENSCAPG00000006547	SF3B1	99	98.923	Cavia_aperea
ENSGAGG00000017478	SF3B1	99	99.227	ENSCPOG00000009353	SF3B1	100	99.227	Cavia_porcellus
ENSGAGG00000017478	SF3B1	100	98.553	ENSCCAG00000020506	SF3B1	100	98.553	Cebus_capucinus
ENSGAGG00000017478	SF3B1	100	98.553	ENSCATG00000035735	SF3B1	100	98.553	Cercocebus_atys
ENSGAGG00000017478	SF3B1	99	99.076	ENSCLAG00000014767	SF3B1	99	99.151	Chinchilla_lanigera
ENSGAGG00000017478	SF3B1	100	98.553	ENSCSAG00000011505	SF3B1	100	98.553	Chlorocebus_sabaeus
ENSGAGG00000017478	SF3B1	77	94.231	ENSCHOG00000009860	SF3B1	75	96.364	Choloepus_hoffmanni
ENSGAGG00000017478	SF3B1	100	99.313	ENSCPBG00000021902	SF3B1	100	100.000	Chrysemys_picta_bellii
ENSGAGG00000017478	SF3B1	68	78.280	ENSCING00000002558	-	99	78.865	Ciona_intestinalis
ENSGAGG00000017478	SF3B1	99	80.061	ENSCSAVG00000002559	-	99	79.756	Ciona_savignyi
ENSGAGG00000017478	SF3B1	100	98.553	ENSCANG00000029415	SF3B1	100	98.553	Colobus_angolensis_palliatus
ENSGAGG00000017478	SF3B1	100	98.553	ENSCGRG00001016990	Sf3b1	100	98.553	Cricetulus_griseus_chok1gshd
ENSGAGG00000017478	SF3B1	100	98.553	ENSCGRG00000005301	Sf3b1	100	98.553	Cricetulus_griseus_crigri
ENSGAGG00000017478	SF3B1	100	89.462	ENSCSEG00000003860	sf3b1	100	89.462	Cynoglossus_semilaevis
ENSGAGG00000017478	SF3B1	96	93.239	ENSCVAG00000003680	sf3b1	99	93.780	Cyprinodon_variegatus
ENSGAGG00000017478	SF3B1	100	93.127	ENSDARG00000056138	sf3b1	100	93.127	Danio_rerio
ENSGAGG00000017478	SF3B1	100	98.478	ENSDNOG00000011754	SF3B1	100	98.478	Dasypus_novemcinctus
ENSGAGG00000017478	SF3B1	99	96.677	ENSDORG00000002399	Sf3b1	100	96.677	Dipodomys_ordii
ENSGAGG00000017478	SF3B1	100	76.079	FBgn0031266	Sf3b1	100	76.079	Drosophila_melanogaster
ENSGAGG00000017478	SF3B1	82	98.516	ENSETEG00000009188	SF3B1	100	98.516	Echinops_telfairi
ENSGAGG00000017478	SF3B1	99	87.538	ENSEBUG00000004325	sf3b1	100	90.000	Eptatretus_burgeri
ENSGAGG00000017478	SF3B1	100	98.553	ENSEASG00005020159	SF3B1	98	98.553	Equus_asinus_asinus
ENSGAGG00000017478	SF3B1	100	98.553	ENSECAG00000021657	SF3B1	98	98.553	Equus_caballus
ENSGAGG00000017478	SF3B1	87	100.000	ENSEEUG00000000836	SF3B1	81	100.000	Erinaceus_europaeus
ENSGAGG00000017478	SF3B1	100	92.348	ENSELUG00000005977	sf3b1	99	91.692	Esox_lucius
ENSGAGG00000017478	SF3B1	100	98.553	ENSFCAG00000005038	SF3B1	100	98.553	Felis_catus
ENSGAGG00000017478	SF3B1	99	99.458	ENSFALG00000004281	SF3B1	99	99.458	Ficedula_albicollis
ENSGAGG00000017478	SF3B1	100	98.553	ENSFDAG00000017510	SF3B1	100	98.553	Fukomys_damarensis
ENSGAGG00000017478	SF3B1	100	92.296	ENSFHEG00000014333	sf3b1	100	92.296	Fundulus_heteroclitus
ENSGAGG00000017478	SF3B1	100	93.111	ENSGMOG00000006773	sf3b1	100	93.111	Gadus_morhua
ENSGAGG00000017478	SF3B1	100	98.855	ENSGALG00000008038	SF3B1	100	98.855	Gallus_gallus
ENSGAGG00000017478	SF3B1	98	93.740	ENSGAFG00000000704	sf3b1	99	93.740	Gambusia_affinis
ENSGAGG00000017478	SF3B1	100	92.657	ENSGACG00000008839	sf3b1	100	93.036	Gasterosteus_aculeatus
ENSGAGG00000017478	SF3B1	99	92.479	ENSGGOG00000009264	SF3B1	99	93.610	Gorilla_gorilla
ENSGAGG00000017478	SF3B1	99	92.279	ENSHBUG00000007705	sf3b1	99	92.786	Haplochromis_burtoni
ENSGAGG00000017478	SF3B1	99	99.228	ENSHGLG00000008285	-	99	99.228	Heterocephalus_glaber_female
ENSGAGG00000017478	SF3B1	99	97.220	ENSHGLG00100005535	-	99	97.220	Heterocephalus_glaber_male
ENSGAGG00000017478	SF3B1	100	92.412	ENSHCOG00000016775	sf3b1	100	92.412	Hippocampus_comes
ENSGAGG00000017478	SF3B1	100	93.500	ENSIPUG00000013171	sf3b1	100	93.500	Ictalurus_punctatus
ENSGAGG00000017478	SF3B1	100	98.553	ENSSTOG00000011034	SF3B1	100	98.553	Ictidomys_tridecemlineatus
ENSGAGG00000017478	SF3B1	98	99.147	ENSJJAG00000010903	Sf3b1	99	99.147	Jaculus_jaculus
ENSGAGG00000017478	SF3B1	100	92.389	ENSKMAG00000004009	sf3b1	100	92.464	Kryptolebias_marmoratus
ENSGAGG00000017478	SF3B1	100	93.166	ENSLBEG00000022208	sf3b1	100	93.166	Labrus_bergylta
ENSGAGG00000017478	SF3B1	99	92.408	ENSLACG00000014832	SF3B1	99	92.331	Latimeria_chalumnae
ENSGAGG00000017478	SF3B1	100	94.419	ENSLOCG00000003899	sf3b1	100	94.419	Lepisosteus_oculatus
ENSGAGG00000017478	SF3B1	100	98.553	ENSLAFG00000001956	SF3B1	100	98.553	Loxodonta_africana
ENSGAGG00000017478	SF3B1	99	99.228	ENSMMUG00000022430	SF3B1	99	99.228	Macaca_mulatta
ENSGAGG00000017478	SF3B1	100	98.553	ENSMNEG00000042333	SF3B1	100	99.396	Macaca_nemestrina
ENSGAGG00000017478	SF3B1	94	92.933	ENSMLEG00000026141	SF3B1	99	93.226	Mandrillus_leucophaeus
ENSGAGG00000017478	SF3B1	100	93.273	ENSMAMG00000010241	sf3b1	100	93.273	Mastacembelus_armatus
ENSGAGG00000017478	SF3B1	100	92.215	ENSMZEG00005021254	sf3b1	100	92.215	Maylandia_zebra
ENSGAGG00000017478	SF3B1	99	98.916	ENSMGAG00000007017	SF3B1	99	98.916	Meleagris_gallopavo
ENSGAGG00000017478	SF3B1	99	94.826	ENSMAUG00000009071	Sf3b1	99	94.981	Mesocricetus_auratus
ENSGAGG00000017478	SF3B1	100	98.477	ENSMICG00000013879	SF3B1	100	98.477	Microcebus_murinus
ENSGAGG00000017478	SF3B1	99	94.826	ENSMOCG00000000455	Sf3b1	99	94.826	Microtus_ochrogaster
ENSGAGG00000017478	SF3B1	84	92.559	ENSMMOG00000000475	sf3b1	100	92.559	Mola_mola
ENSGAGG00000017478	SF3B1	100	98.323	ENSMODG00000012275	SF3B1	100	98.323	Monodelphis_domestica
ENSGAGG00000017478	SF3B1	100	93.197	ENSMALG00000017211	sf3b1	100	93.197	Monopterus_albus
ENSGAGG00000017478	SF3B1	100	98.553	MGP_CAROLIEiJ_G0014141	Sf3b1	100	98.553	Mus_caroli
ENSGAGG00000017478	SF3B1	100	98.553	ENSMUSG00000025982	Sf3b1	100	98.553	Mus_musculus
ENSGAGG00000017478	SF3B1	100	98.553	MGP_SPRETEiJ_G0014947	Sf3b1	100	98.553	Mus_spretus
ENSGAGG00000017478	SF3B1	100	98.553	ENSMPUG00000007799	SF3B1	100	98.553	Mustela_putorius_furo
ENSGAGG00000017478	SF3B1	100	97.334	ENSMLUG00000000840	SF3B1	100	97.334	Myotis_lucifugus
ENSGAGG00000017478	SF3B1	99	99.227	ENSNGAG00000021884	-	99	99.227	Nannospalax_galili
ENSGAGG00000017478	SF3B1	100	88.485	ENSNBRG00000015816	sf3b1	100	88.485	Neolamprologus_brichardi
ENSGAGG00000017478	SF3B1	100	98.553	ENSNLEG00000006861	SF3B1	100	98.553	Nomascus_leucogenys
ENSGAGG00000017478	SF3B1	69	100.000	ENSMEUG00000015848	-	67	100.000	Notamacropus_eugenii
ENSGAGG00000017478	SF3B1	100	85.520	ENSOPRG00000008596	SF3B1	100	85.520	Ochotona_princeps
ENSGAGG00000017478	SF3B1	100	98.553	ENSODEG00000011153	-	100	98.553	Octodon_degus
ENSGAGG00000017478	SF3B1	100	92.215	ENSONIG00000013758	sf3b1	100	92.215	Oreochromis_niloticus
ENSGAGG00000017478	SF3B1	83	98.708	ENSOCUG00000012722	-	96	98.708	Oryctolagus_cuniculus
ENSGAGG00000017478	SF3B1	100	92.819	ENSORLG00000020219	sf3b1	100	92.819	Oryzias_latipes
ENSGAGG00000017478	SF3B1	100	92.819	ENSORLG00020001746	sf3b1	100	92.819	Oryzias_latipes_hni
ENSGAGG00000017478	SF3B1	64	90.201	ENSORLG00015001759	sf3b1	98	90.201	Oryzias_latipes_hsok
ENSGAGG00000017478	SF3B1	100	92.976	ENSOMEG00000019231	sf3b1	100	92.976	Oryzias_melastigma
ENSGAGG00000017478	SF3B1	100	98.477	ENSOARG00000015374	SF3B1	100	98.477	Ovis_aries
ENSGAGG00000017478	SF3B1	100	98.553	ENSPPAG00000035007	SF3B1	100	98.553	Pan_paniscus
ENSGAGG00000017478	SF3B1	100	98.553	ENSPPRG00000009090	SF3B1	100	98.553	Panthera_pardus
ENSGAGG00000017478	SF3B1	100	98.553	ENSPTIG00000021557	SF3B1	100	98.553	Panthera_tigris_altaica
ENSGAGG00000017478	SF3B1	99	90.608	ENSPTRG00000012771	SF3B1	99	90.762	Pan_troglodytes
ENSGAGG00000017478	SF3B1	100	98.553	ENSPANG00000013417	SF3B1	100	98.553	Papio_anubis
ENSGAGG00000017478	SF3B1	100	94.554	ENSPKIG00000000784	sf3b1	100	94.554	Paramormyrops_kingsleyae
ENSGAGG00000017478	SF3B1	99	98.528	ENSPSIG00000017222	SF3B1	98	98.528	Pelodiscus_sinensis
ENSGAGG00000017478	SF3B1	91	93.384	ENSPMGG00000004330	sf3b1	99	93.384	Periophthalmus_magnuspinnatus
ENSGAGG00000017478	SF3B1	99	99.228	ENSPEMG00000010699	Sf3b1	100	99.228	Peromyscus_maniculatus_bairdii
ENSGAGG00000017478	SF3B1	100	89.494	ENSPMAG00000001311	sf3b1	100	89.645	Petromyzon_marinus
ENSGAGG00000017478	SF3B1	100	98.247	ENSPCIG00000010642	SF3B1	100	98.247	Phascolarctos_cinereus
ENSGAGG00000017478	SF3B1	100	92.981	ENSPFOG00000000073	sf3b1	100	92.981	Poecilia_formosa
ENSGAGG00000017478	SF3B1	100	93.051	ENSPLAG00000002293	sf3b1	100	93.051	Poecilia_latipinna
ENSGAGG00000017478	SF3B1	100	93.051	ENSPMEG00000000446	sf3b1	99	92.389	Poecilia_mexicana
ENSGAGG00000017478	SF3B1	100	93.127	ENSPREG00000019652	sf3b1	100	93.127	Poecilia_reticulata
ENSGAGG00000017478	SF3B1	100	98.540	ENSPPYG00000013044	SF3B1	96	98.540	Pongo_abelii
ENSGAGG00000017478	SF3B1	100	98.401	ENSPCAG00000009292	SF3B1	100	98.401	Procavia_capensis
ENSGAGG00000017478	SF3B1	100	98.477	ENSPCOG00000024074	SF3B1	100	98.477	Propithecus_coquereli
ENSGAGG00000017478	SF3B1	100	98.553	ENSPVAG00000008302	SF3B1	100	98.553	Pteropus_vampyrus
ENSGAGG00000017478	SF3B1	100	92.139	ENSPNYG00000014939	sf3b1	100	92.139	Pundamilia_nyererei
ENSGAGG00000017478	SF3B1	100	93.429	ENSPNAG00000008288	sf3b1	100	93.429	Pygocentrus_nattereri
ENSGAGG00000017478	SF3B1	100	98.553	ENSRNOG00000013516	Sf3b1	100	98.553	Rattus_norvegicus
ENSGAGG00000017478	SF3B1	99	95.676	ENSRBIG00000026096	SF3B1	99	95.676	Rhinopithecus_bieti
ENSGAGG00000017478	SF3B1	100	98.553	ENSRROG00000031308	SF3B1	100	98.553	Rhinopithecus_roxellana
ENSGAGG00000017478	SF3B1	100	98.553	ENSSBOG00000020080	SF3B1	100	98.553	Saimiri_boliviensis_boliviensis
ENSGAGG00000017478	SF3B1	100	98.323	ENSSHAG00000017564	SF3B1	100	98.323	Sarcophilus_harrisii
ENSGAGG00000017478	SF3B1	100	94.260	ENSSFOG00015021535	sf3b1	100	94.411	Scleropages_formosus
ENSGAGG00000017478	SF3B1	99	92.540	ENSSMAG00000013977	sf3b1	99	92.540	Scophthalmus_maximus
ENSGAGG00000017478	SF3B1	100	93.046	ENSSDUG00000017422	sf3b1	100	93.046	Seriola_dumerili
ENSGAGG00000017478	SF3B1	100	92.971	ENSSLDG00000019495	sf3b1	100	92.971	Seriola_lalandi_dorsalis
ENSGAGG00000017478	SF3B1	76	99.824	ENSSARG00000007016	SF3B1	76	99.824	Sorex_araneus
ENSGAGG00000017478	SF3B1	100	98.855	ENSSPUG00000000410	SF3B1	100	98.855	Sphenodon_punctatus
ENSGAGG00000017478	SF3B1	100	93.197	ENSSPAG00000010451	sf3b1	99	93.197	Stegastes_partitus
ENSGAGG00000017478	SF3B1	91	98.080	ENSSSCG00000016075	SF3B1	100	99.396	Sus_scrofa
ENSGAGG00000017478	SF3B1	100	98.779	ENSTGUG00000010553	SF3B1	100	98.779	Taeniopygia_guttata
ENSGAGG00000017478	SF3B1	100	93.122	ENSTRUG00000015534	sf3b1	100	93.122	Takifugu_rubripes
ENSGAGG00000017478	SF3B1	87	99.586	ENSTBEG00000008714	SF3B1	93	99.586	Tupaia_belangeri
ENSGAGG00000017478	SF3B1	92	94.058	ENSTTRG00000003414	SF3B1	92	94.058	Tursiops_truncatus
ENSGAGG00000017478	SF3B1	94	93.148	ENSUAMG00000018506	SF3B1	99	98.988	Ursus_americanus
ENSGAGG00000017478	SF3B1	100	98.553	ENSUMAG00000020945	SF3B1	100	98.553	Ursus_maritimus
ENSGAGG00000017478	SF3B1	100	90.015	ENSVPAG00000005798	SF3B1	95	96.244	Vicugna_pacos
ENSGAGG00000017478	SF3B1	100	98.553	ENSVVUG00000025948	SF3B1	95	98.553	Vulpes_vulpes
ENSGAGG00000017478	SF3B1	100	96.037	ENSXETG00000013339	sf3b1	100	96.037	Xenopus_tropicalis
ENSGAGG00000017478	SF3B1	100	89.658	ENSXCOG00000018086	sf3b1	100	89.545	Xiphophorus_couchianus
ENSGAGG00000017478	SF3B1	100	93.127	ENSXMAG00000007369	sf3b1	100	93.344	Xiphophorus_maculatus