EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGAGG00000017535 (Gene tree)
Gene ID: -
Gene Symbol: XRN1
Alias: SEP1
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Gopherus_agassizii
Status: putative
Strand: Minus strand
Length: 75099 bases
Position: chrPPEB01004590.1:10961-86059
Accession: 30654
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAGP00000023980	XRN_N	PF03159.18	1.3e-94	1	1
ENSGAGP00000023976	XRN_N	PF03159.18	1.4e-94	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAGT00000027309	XRN1-202	5258	-	ENSGAGP00000023980	1661 (aa)	-	-
ENSGAGT00000027305	XRN1-201	5360	-	ENSGAGP00000023976	1695 (aa)	-	-

Gene Model

Click here to download ENSGAGG00000017535's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAGG00000017535's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAGG00000017535	XRN1	99	77.939	ENSG00000114127	XRN1	96	96.117	Homo_sapiens
ENSGAGG00000017535	XRN1	95	72.536	ENSAPOG00000000622	xrn1	93	76.546	Acanthochromis_polyacanthus
ENSGAGG00000017535	XRN1	99	78.640	ENSAMEG00000012538	XRN1	95	79.122	Ailuropoda_melanoleuca
ENSGAGG00000017535	XRN1	93	70.209	ENSACIG00000001057	xrn1	93	70.465	Amphilophus_citrinellus
ENSGAGG00000017535	XRN1	93	70.840	ENSAOCG00000014097	xrn1	94	71.157	Amphiprion_ocellaris
ENSGAGG00000017535	XRN1	99	62.375	ENSAPEG00000006620	xrn1	91	72.466	Amphiprion_percula
ENSGAGG00000017535	XRN1	98	67.562	ENSATEG00000009752	xrn1	95	67.562	Anabas_testudineus
ENSGAGG00000017535	XRN1	98	86.892	ENSAPLG00000004905	XRN1	95	86.892	Anas_platyrhynchos
ENSGAGG00000017535	XRN1	99	80.845	ENSACAG00000004985	XRN1	94	80.845	Anolis_carolinensis
ENSGAGG00000017535	XRN1	99	77.697	ENSANAG00000029013	XRN1	99	85.979	Aotus_nancymaae
ENSGAGG00000017535	XRN1	99	62.500	ENSACLG00000004806	xrn1	94	62.500	Astatotilapia_calliptera
ENSGAGG00000017535	XRN1	99	62.943	ENSAMXG00000019370	xrn1	95	92.233	Astyanax_mexicanus
ENSGAGG00000017535	XRN1	99	77.033	ENSBTAG00000011524	XRN1	95	77.392	Bos_taurus
ENSGAGG00000017535	XRN1	72	38.444	WBGene00012730	xrn-1	81	37.641	Caenorhabditis_elegans
ENSGAGG00000017535	XRN1	99	77.939	ENSCJAG00000001872	XRN1	98	77.939	Callithrix_jacchus
ENSGAGG00000017535	XRN1	99	78.963	ENSCAFG00000007783	XRN1	95	79.325	Canis_familiaris
ENSGAGG00000017535	XRN1	99	79.024	ENSCAFG00020009120	XRN1	99	88.024	Canis_lupus_dingo
ENSGAGG00000017535	XRN1	99	78.180	ENSCHIG00000019192	XRN1	95	78.481	Capra_hircus
ENSGAGG00000017535	XRN1	99	77.818	ENSTSYG00000002705	XRN1	95	77.878	Carlito_syrichta
ENSGAGG00000017535	XRN1	99	78.059	ENSCCAG00000034800	XRN1	99	87.937	Cebus_capucinus
ENSGAGG00000017535	XRN1	99	78.360	ENSCATG00000041794	XRN1	95	78.360	Cercocebus_atys
ENSGAGG00000017535	XRN1	99	77.456	ENSCLAG00000001451	XRN1	99	88.095	Chinchilla_lanigera
ENSGAGG00000017535	XRN1	99	77.751	ENSCSAG00000011265	XRN1	95	77.751	Chlorocebus_sabaeus
ENSGAGG00000017535	XRN1	57	98.701	ENSCHOG00000013961	-	57	98.701	Choloepus_hoffmanni
ENSGAGG00000017535	XRN1	72	44.410	ENSCSAVG00000008584	-	99	44.488	Ciona_savignyi
ENSGAGG00000017535	XRN1	99	78.481	ENSCANG00000037495	XRN1	99	87.937	Colobus_angolensis_palliatus
ENSGAGG00000017535	XRN1	99	77.517	ENSCGRG00001019411	Xrn1	99	87.143	Cricetulus_griseus_chok1gshd
ENSGAGG00000017535	XRN1	99	77.517	ENSCGRG00000012464	Xrn1	99	87.143	Cricetulus_griseus_crigri
ENSGAGG00000017535	XRN1	93	65.352	ENSCSEG00000021285	xrn1	94	93.269	Cynoglossus_semilaevis
ENSGAGG00000017535	XRN1	68	67.750	ENSCVAG00000013089	xrn1	99	72.487	Cyprinodon_variegatus
ENSGAGG00000017535	XRN1	99	65.105	ENSDARG00000091652	xrn1	98	80.761	Danio_rerio
ENSGAGG00000017535	XRN1	99	76.770	ENSDORG00000013833	Xrn1	94	77.193	Dipodomys_ordii
ENSGAGG00000017535	XRN1	75	40.174	FBgn0020261	pcm	74	39.952	Drosophila_melanogaster
ENSGAGG00000017535	XRN1	85	90.090	ENSETEG00000003978	XRN1	82	90.323	Echinops_telfairi
ENSGAGG00000017535	XRN1	99	78.481	ENSEASG00005002687	XRN1	99	87.302	Equus_asinus_asinus
ENSGAGG00000017535	XRN1	99	76.974	ENSECAG00000008301	XRN1	95	77.273	Equus_caballus
ENSGAGG00000017535	XRN1	92	75.464	ENSEEUG00000011323	XRN1	87	75.464	Erinaceus_europaeus
ENSGAGG00000017535	XRN1	99	64.159	ENSELUG00000000169	xrn1	94	64.497	Esox_lucius
ENSGAGG00000017535	XRN1	99	73.494	ENSFCAG00000027589	XRN1	99	87.500	Felis_catus
ENSGAGG00000017535	XRN1	99	86.564	ENSFALG00000007021	XRN1	95	86.564	Ficedula_albicollis
ENSGAGG00000017535	XRN1	99	78.119	ENSFDAG00000020494	XRN1	99	88.095	Fukomys_damarensis
ENSGAGG00000017535	XRN1	80	68.368	ENSGMOG00000006396	xrn1	78	68.342	Gadus_morhua
ENSGAGG00000017535	XRN1	99	87.158	ENSGALG00000002706	XRN1	95	87.158	Gallus_gallus
ENSGAGG00000017535	XRN1	99	61.874	ENSGACG00000014328	xrn1	94	61.993	Gasterosteus_aculeatus
ENSGAGG00000017535	XRN1	99	78.180	ENSGGOG00000008047	XRN1	95	78.180	Gorilla_gorilla
ENSGAGG00000017535	XRN1	93	70.245	ENSHBUG00000005908	xrn1	98	73.140	Haplochromis_burtoni
ENSGAGG00000017535	XRN1	99	79.018	ENSHGLG00000014476	XRN1	99	88.095	Heterocephalus_glaber_female
ENSGAGG00000017535	XRN1	99	79.078	ENSHGLG00100015130	XRN1	99	88.095	Heterocephalus_glaber_male
ENSGAGG00000017535	XRN1	96	70.040	ENSHCOG00000014062	xrn1	94	71.208	Hippocampus_comes
ENSGAGG00000017535	XRN1	99	63.767	ENSIPUG00000015229	xrn1	95	64.187	Ictalurus_punctatus
ENSGAGG00000017535	XRN1	99	79.024	ENSSTOG00000013552	XRN1	99	88.024	Ictidomys_tridecemlineatus
ENSGAGG00000017535	XRN1	98	77.036	ENSJJAG00000010863	Xrn1	99	86.942	Jaculus_jaculus
ENSGAGG00000017535	XRN1	94	68.221	ENSKMAG00000021356	xrn1	94	76.632	Kryptolebias_marmoratus
ENSGAGG00000017535	XRN1	94	70.231	ENSLBEG00000018656	xrn1	97	94.175	Labrus_bergylta
ENSGAGG00000017535	XRN1	99	74.788	ENSLACG00000009020	XRN1	94	74.788	Latimeria_chalumnae
ENSGAGG00000017535	XRN1	99	68.059	ENSLOCG00000007944	xrn1	95	67.807	Lepisosteus_oculatus
ENSGAGG00000017535	XRN1	64	86.342	ENSLAFG00000015426	XRN1	100	86.342	Loxodonta_africana
ENSGAGG00000017535	XRN1	99	78.300	ENSMFAG00000032599	XRN1	95	78.300	Macaca_fascicularis
ENSGAGG00000017535	XRN1	99	78.360	ENSMMUG00000014038	XRN1	95	78.360	Macaca_mulatta
ENSGAGG00000017535	XRN1	99	78.180	ENSMNEG00000034217	XRN1	95	78.180	Macaca_nemestrina
ENSGAGG00000017535	XRN1	91	70.008	ENSMAMG00000013219	xrn1	95	74.280	Mastacembelus_armatus
ENSGAGG00000017535	XRN1	99	62.500	ENSMZEG00005015099	xrn1	94	62.500	Maylandia_zebra
ENSGAGG00000017535	XRN1	98	85.169	ENSMGAG00000006333	XRN1	94	85.169	Meleagris_gallopavo
ENSGAGG00000017535	XRN1	99	78.059	ENSMICG00000048948	XRN1	96	96.117	Microcebus_murinus
ENSGAGG00000017535	XRN1	58	86.667	ENSMOCG00000008665	Xrn1	99	86.667	Microtus_ochrogaster
ENSGAGG00000017535	XRN1	99	79.254	ENSMODG00000021236	XRN1	94	79.615	Monodelphis_domestica
ENSGAGG00000017535	XRN1	93	67.029	ENSMALG00000004098	xrn1	92	66.951	Monopterus_albus
ENSGAGG00000017535	XRN1	99	71.042	MGP_CAROLIEiJ_G0032535	Xrn1	100	90.000	Mus_caroli
ENSGAGG00000017535	XRN1	99	76.371	ENSMUSG00000032410	Xrn1	100	90.000	Mus_musculus
ENSGAGG00000017535	XRN1	99	76.733	MGP_PahariEiJ_G0015404	Xrn1	100	90.000	Mus_pahari
ENSGAGG00000017535	XRN1	99	76.371	MGP_SPRETEiJ_G0033678	Xrn1	100	90.000	Mus_spretus
ENSGAGG00000017535	XRN1	99	77.798	ENSMPUG00000012040	XRN1	94	78.219	Mustela_putorius_furo
ENSGAGG00000017535	XRN1	99	78.303	ENSMLUG00000016885	XRN1	94	78.303	Myotis_lucifugus
ENSGAGG00000017535	XRN1	59	82.571	ENSNGAG00000023964	Xrn1	99	82.698	Nannospalax_galili
ENSGAGG00000017535	XRN1	99	77.818	ENSNLEG00000004726	XRN1	95	77.999	Nomascus_leucogenys
ENSGAGG00000017535	XRN1	68	96.907	ENSMEUG00000014473	-	66	97.087	Notamacropus_eugenii
ENSGAGG00000017535	XRN1	78	75.559	ENSOPRG00000007337	-	68	82.517	Ochotona_princeps
ENSGAGG00000017535	XRN1	99	63.413	ENSONIG00000016673	xrn1	99	64.510	Oreochromis_niloticus
ENSGAGG00000017535	XRN1	91	77.081	ENSOANG00000006735	XRN1	94	77.477	Ornithorhynchus_anatinus
ENSGAGG00000017535	XRN1	99	78.881	ENSOCUG00000001861	XRN1	94	78.941	Oryctolagus_cuniculus
ENSGAGG00000017535	XRN1	95	70.642	ENSORLG00000013005	xrn1	92	70.642	Oryzias_latipes
ENSGAGG00000017535	XRN1	95	71.008	ENSORLG00020005559	xrn1	93	71.008	Oryzias_latipes_hni
ENSGAGG00000017535	XRN1	95	71.085	ENSORLG00015022523	xrn1	93	71.085	Oryzias_latipes_hsok
ENSGAGG00000017535	XRN1	95	71.240	ENSOMEG00000015397	xrn1	93	72.713	Oryzias_melastigma
ENSGAGG00000017535	XRN1	99	75.359	ENSOGAG00000000170	XRN1	95	75.419	Otolemur_garnettii
ENSGAGG00000017535	XRN1	99	78.110	ENSOARG00000006343	XRN1	95	78.409	Ovis_aries
ENSGAGG00000017535	XRN1	99	78.240	ENSPPAG00000010180	XRN1	95	78.240	Pan_paniscus
ENSGAGG00000017535	XRN1	99	77.711	ENSPPRG00000007125	XRN1	95	78.253	Panthera_pardus
ENSGAGG00000017535	XRN1	99	77.651	ENSPTIG00000021081	XRN1	95	78.193	Panthera_tigris_altaica
ENSGAGG00000017535	XRN1	99	78.300	ENSPTRG00000015482	XRN1	95	78.300	Pan_troglodytes
ENSGAGG00000017535	XRN1	99	78.300	ENSPANG00000010638	XRN1	95	78.300	Papio_anubis
ENSGAGG00000017535	XRN1	99	92.853	ENSPSIG00000018050	XRN1	95	92.853	Pelodiscus_sinensis
ENSGAGG00000017535	XRN1	58	78.571	ENSPMGG00000002648	xrn1	99	78.571	Periophthalmus_magnuspinnatus
ENSGAGG00000017535	XRN1	58	86.825	ENSPEMG00000020610	Xrn1	99	86.825	Peromyscus_maniculatus_bairdii
ENSGAGG00000017535	XRN1	67	51.098	ENSPMAG00000002975	xrn1	99	49.071	Petromyzon_marinus
ENSGAGG00000017535	XRN1	94	86.293	ENSPCIG00000028735	XRN1	99	88.553	Phascolarctos_cinereus
ENSGAGG00000017535	XRN1	96	63.693	ENSPFOG00000013932	xrn1	99	63.755	Poecilia_formosa
ENSGAGG00000017535	XRN1	96	63.452	ENSPLAG00000021653	xrn1	99	63.720	Poecilia_latipinna
ENSGAGG00000017535	XRN1	94	63.927	ENSPMEG00000003076	xrn1	95	63.990	Poecilia_mexicana
ENSGAGG00000017535	XRN1	95	68.624	ENSPREG00000021147	xrn1	94	68.238	Poecilia_reticulata
ENSGAGG00000017535	XRN1	99	77.254	ENSPPYG00000014172	XRN1	95	77.254	Pongo_abelii
ENSGAGG00000017535	XRN1	92	72.579	ENSPCAG00000005638	XRN1	96	72.579	Procavia_capensis
ENSGAGG00000017535	XRN1	99	78.180	ENSPCOG00000013089	XRN1	99	87.725	Propithecus_coquereli
ENSGAGG00000017535	XRN1	95	82.857	ENSPVAG00000016265	XRN1	91	82.857	Pteropus_vampyrus
ENSGAGG00000017535	XRN1	93	70.889	ENSPNYG00000010570	xrn1	92	70.653	Pundamilia_nyererei
ENSGAGG00000017535	XRN1	99	62.118	ENSPNAG00000023531	xrn1	95	62.081	Pygocentrus_nattereri
ENSGAGG00000017535	XRN1	99	76.974	ENSRNOG00000042951	Xrn1	95	77.155	Rattus_norvegicus
ENSGAGG00000017535	XRN1	98	78.873	ENSRBIG00000041227	XRN1	95	77.512	Rhinopithecus_bieti
ENSGAGG00000017535	XRN1	71	33.621	YGL173C	XRN1	81	34.066	Saccharomyces_cerevisiae
ENSGAGG00000017535	XRN1	99	77.637	ENSSBOG00000029561	XRN1	95	77.637	Saimiri_boliviensis_boliviensis
ENSGAGG00000017535	XRN1	98	81.046	ENSSHAG00000016207	XRN1	94	81.415	Sarcophilus_harrisii
ENSGAGG00000017535	XRN1	99	62.749	ENSSFOG00015024211	xrn1	95	62.869	Scleropages_formosus
ENSGAGG00000017535	XRN1	95	71.888	ENSSMAG00000016534	xrn1	96	71.888	Scophthalmus_maximus
ENSGAGG00000017535	XRN1	84	71.486	ENSSDUG00000010306	xrn1	88	71.532	Seriola_dumerili
ENSGAGG00000017535	XRN1	99	68.548	ENSSLDG00000021543	xrn1	95	68.548	Seriola_lalandi_dorsalis
ENSGAGG00000017535	XRN1	69	77.893	ENSSARG00000007741	-	82	77.893	Sorex_araneus
ENSGAGG00000017535	XRN1	99	86.468	ENSTGUG00000008498	XRN1	95	86.468	Taeniopygia_guttata
ENSGAGG00000017535	XRN1	93	69.129	ENSTRUG00000004895	xrn1	99	75.926	Takifugu_rubripes
ENSGAGG00000017535	XRN1	99	58.976	ENSTNIG00000017615	xrn1	95	59.501	Tetraodon_nigroviridis
ENSGAGG00000017535	XRN1	80	91.105	ENSTBEG00000003256	XRN1	83	79.426	Tupaia_belangeri
ENSGAGG00000017535	XRN1	99	73.445	ENSTTRG00000012914	XRN1	95	73.744	Tursiops_truncatus
ENSGAGG00000017535	XRN1	99	77.336	ENSUAMG00000001608	XRN1	99	88.024	Ursus_americanus
ENSGAGG00000017535	XRN1	99	79.024	ENSUMAG00000013625	XRN1	95	79.445	Ursus_maritimus
ENSGAGG00000017535	XRN1	99	74.147	ENSVPAG00000004690	XRN1	95	74.446	Vicugna_pacos
ENSGAGG00000017535	XRN1	99	78.963	ENSVVUG00000024461	XRN1	99	88.024	Vulpes_vulpes
ENSGAGG00000017535	XRN1	99	69.413	ENSXETG00000000619	xrn1	97	86.828	Xenopus_tropicalis
ENSGAGG00000017535	XRN1	90	71.647	ENSXCOG00000007917	xrn1	90	71.807	Xiphophorus_couchianus
ENSGAGG00000017535	XRN1	89	71.637	ENSXMAG00000018320	xrn1	92	71.566	Xiphophorus_maculatus