EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAGG00000017780 (Gene tree)
Gene ID: -
Gene Symbol: YBX3
Alias: CSDA|CSDA1|ZONAB|dbpA
Full Name: Y-box binding protein 3
Gene Type: protein_coding
Species: Gopherus_agassizii
Status: putative
Strand: Minus strand
Length: 44020 bases
Position: chrPPEB01003445.1:59524-103543
Accession: 2428
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAGP00000024333	CSD	PF00313.22	4.7e-26	1	1
ENSGAGP00000024332	CSD	PF00313.22	4.8e-26	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAGT00000027697	YBX3-202	1337	-	ENSGAGP00000024333	288 (aa)	-	-
ENSGAGT00000027696	YBX3-201	1535	-	ENSGAGP00000024332	354 (aa)	-	-

Gene Model

Click here to download ENSGAGG00000017780's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAGG00000017780's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAGG00000017780	YBX3	82	52.427	ENSGAGG00000022893	-	76	57.192

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAGG00000017780	YBX3	77	82.960	ENSG00000060138	YBX3	92	97.647	Homo_sapiens
ENSGAGG00000017780	YBX3	81	80.277	ENSAMEG00000009393	YBX3	82	80.277	Ailuropoda_melanoleuca
ENSGAGG00000017780	YBX3	74	98.077	ENSAPLG00000003147	YBX3	76	98.077	Anas_platyrhynchos
ENSGAGG00000017780	YBX3	53	85.000	ENSANAG00000033366	-	69	84.746	Aotus_nancymaae
ENSGAGG00000017780	YBX3	77	83.857	ENSANAG00000024492	-	92	79.381	Aotus_nancymaae
ENSGAGG00000017780	YBX3	94	71.307	ENSBTAG00000009663	YBX3	90	70.710	Bos_taurus
ENSGAGG00000017780	YBX3	93	61.194	ENSCJAG00000033824	-	64	87.879	Callithrix_jacchus
ENSGAGG00000017780	YBX3	77	82.511	ENSCJAG00000021660	-	93	70.231	Callithrix_jacchus
ENSGAGG00000017780	YBX3	75	85.253	ENSCAFG00000013401	YBX3	100	85.253	Canis_familiaris
ENSGAGG00000017780	YBX3	77	81.081	ENSCAFG00020006412	YBX3	100	67.105	Canis_lupus_dingo
ENSGAGG00000017780	YBX3	94	72.159	ENSCHIG00000010863	YBX3	95	74.260	Capra_hircus
ENSGAGG00000017780	YBX3	99	63.194	ENSTSYG00000035821	-	70	95.652	Carlito_syrichta
ENSGAGG00000017780	YBX3	80	77.778	ENSTSYG00000004204	-	88	78.472	Carlito_syrichta
ENSGAGG00000017780	YBX3	80	76.307	ENSCAPG00000015039	YBX3	93	76.307	Cavia_aperea
ENSGAGG00000017780	YBX3	69	98.925	ENSCPOG00000011329	YBX3	81	85.000	Cavia_porcellus
ENSGAGG00000017780	YBX3	77	82.960	ENSCCAG00000016469	YBX3	73	83.710	Cebus_capucinus
ENSGAGG00000017780	YBX3	77	82.960	ENSCATG00000034411	YBX3	78	79.038	Cercocebus_atys
ENSGAGG00000017780	YBX3	82	74.582	ENSCLAG00000016030	YBX3	94	76.307	Chinchilla_lanigera
ENSGAGG00000017780	YBX3	81	78.840	ENSCSAG00000008744	YBX3	78	79.381	Chlorocebus_sabaeus
ENSGAGG00000017780	YBX3	100	95.775	ENSCPBG00000014147	YBX3	100	95.775	Chrysemys_picta_bellii
ENSGAGG00000017780	YBX3	77	84.305	ENSCANG00000036801	YBX3	90	85.068	Colobus_angolensis_palliatus
ENSGAGG00000017780	YBX3	78	88.596	ENSCGRG00001016148	Ybx3	91	73.507	Cricetulus_griseus_chok1gshd
ENSGAGG00000017780	YBX3	73	95.192	ENSCGRG00000004563	Ybx3	98	74.403	Cricetulus_griseus_crigri
ENSGAGG00000017780	YBX3	98	69.034	ENSDORG00000009103	Ybx3	81	79.443	Dipodomys_ordii
ENSGAGG00000017780	YBX3	79	70.877	ENSETEG00000002557	YBX3	99	70.175	Echinops_telfairi
ENSGAGG00000017780	YBX3	77	78.281	ENSEASG00005014726	YBX3	71	89.583	Equus_asinus_asinus
ENSGAGG00000017780	YBX3	77	81.532	ENSECAG00000013777	YBX3	73	81.818	Equus_caballus
ENSGAGG00000017780	YBX3	79	73.776	ENSEEUG00000010415	YBX3	100	74.126	Erinaceus_europaeus
ENSGAGG00000017780	YBX3	77	83.408	ENSFCAG00000027748	YBX3	78	79.310	Felis_catus
ENSGAGG00000017780	YBX3	74	97.115	ENSFALG00000003661	YBX3	78	97.115	Ficedula_albicollis
ENSGAGG00000017780	YBX3	68	100.000	ENSFDAG00000021192	YBX3	92	73.171	Fukomys_damarensis
ENSGAGG00000017780	YBX3	89	80.385	ENSGALG00000031890	YBX3	89	81.081	Gallus_gallus
ENSGAGG00000017780	YBX3	77	82.960	ENSGGOG00000001352	YBX3	78	79.381	Gorilla_gorilla
ENSGAGG00000017780	YBX3	83	66.557	ENSHGLG00000014798	-	59	97.826	Heterocephalus_glaber_female
ENSGAGG00000017780	YBX3	75	70.480	ENSHGLG00000015495	-	90	71.193	Heterocephalus_glaber_female
ENSGAGG00000017780	YBX3	75	83.486	ENSHGLG00100003589	YBX3	87	79.358	Heterocephalus_glaber_male
ENSGAGG00000017780	YBX3	81	76.289	ENSSTOG00000032577	-	95	68.750	Ictidomys_tridecemlineatus
ENSGAGG00000017780	YBX3	80	73.776	ENSSTOG00000002108	-	88	74.476	Ictidomys_tridecemlineatus
ENSGAGG00000017780	YBX3	81	58.503	ENSJJAG00000014239	Ybx3	93	85.542	Jaculus_jaculus
ENSGAGG00000017780	YBX3	81	79.452	ENSLAFG00000017247	YBX3	96	69.846	Loxodonta_africana
ENSGAGG00000017780	YBX3	74	90.385	ENSMFAG00000039369	YBX3	78	79.381	Macaca_fascicularis
ENSGAGG00000017780	YBX3	81	78.840	ENSMMUG00000022469	YBX3	89	79.381	Macaca_mulatta
ENSGAGG00000017780	YBX3	74	90.385	ENSMNEG00000045109	YBX3	78	79.381	Macaca_nemestrina
ENSGAGG00000017780	YBX3	75	84.793	ENSMLEG00000033618	YBX3	76	84.793	Mandrillus_leucophaeus
ENSGAGG00000017780	YBX3	74	98.095	ENSMGAG00000014224	YBX3	100	87.907	Meleagris_gallopavo
ENSGAGG00000017780	YBX3	87	78.968	ENSMAUG00000012185	Ybx3	100	75.466	Mesocricetus_auratus
ENSGAGG00000017780	YBX3	100	63.230	ENSMICG00000031459	-	77	72.603	Microcebus_murinus
ENSGAGG00000017780	YBX3	81	80.479	ENSMICG00000038002	-	78	80.690	Microcebus_murinus
ENSGAGG00000017780	YBX3	76	89.815	ENSMOCG00000016291	Ybx3	93	80.543	Microtus_ochrogaster
ENSGAGG00000017780	YBX3	80	79.298	ENSMODG00000018248	YBX3	91	79.298	Monodelphis_domestica
ENSGAGG00000017780	YBX3	78	88.596	MGP_CAROLIEiJ_G0028947	Ybx3	91	73.881	Mus_caroli
ENSGAGG00000017780	YBX3	78	88.596	ENSMUSG00000030189	Ybx3	91	73.881	Mus_musculus
ENSGAGG00000017780	YBX3	78	88.596	MGP_PahariEiJ_G0022709	Ybx3	91	74.254	Mus_pahari
ENSGAGG00000017780	YBX3	78	88.596	MGP_SPRETEiJ_G0029994	Ybx3	91	73.881	Mus_spretus
ENSGAGG00000017780	YBX3	81	61.667	ENSMPUG00000011810	YBX3	78	61.953	Mustela_putorius_furo
ENSGAGG00000017780	YBX3	73	78.067	ENSMLUG00000007476	YBX3	100	75.836	Myotis_lucifugus
ENSGAGG00000017780	YBX3	73	89.423	ENSNGAG00000000710	Ybx3	88	74.537	Nannospalax_galili
ENSGAGG00000017780	YBX3	81	75.768	ENSNLEG00000034844	YBX3	83	74.658	Nomascus_leucogenys
ENSGAGG00000017780	YBX3	54	66.497	ENSMEUG00000002507	-	81	72.941	Notamacropus_eugenii
ENSGAGG00000017780	YBX3	66	74.370	ENSODEG00000017957	YBX3	85	72.165	Octodon_degus
ENSGAGG00000017780	YBX3	81	74.315	ENSOCUG00000001889	YBX3	84	74.483	Oryctolagus_cuniculus
ENSGAGG00000017780	YBX3	83	85.271	ENSOGAG00000013245	YBX3	79	77.441	Otolemur_garnettii
ENSGAGG00000017780	YBX3	70	98.925	ENSOARG00000020919	YBX3	98	73.540	Ovis_aries
ENSGAGG00000017780	YBX3	77	82.960	ENSPPAG00000039068	YBX3	81	79.038	Pan_paniscus
ENSGAGG00000017780	YBX3	77	83.408	ENSPPRG00000005859	YBX3	78	79.310	Panthera_pardus
ENSGAGG00000017780	YBX3	79	79.930	ENSPTIG00000005322	YBX3	81	79.720	Panthera_tigris_altaica
ENSGAGG00000017780	YBX3	77	82.960	ENSPTRG00000004681	YBX3	78	79.381	Pan_troglodytes
ENSGAGG00000017780	YBX3	77	82.960	ENSPANG00000010280	YBX3	78	79.038	Papio_anubis
ENSGAGG00000017780	YBX3	74	92.991	ENSPSIG00000009247	YBX3	100	92.991	Pelodiscus_sinensis
ENSGAGG00000017780	YBX3	85	80.408	ENSPEMG00000012132	-	88	80.543	Peromyscus_maniculatus_bairdii
ENSGAGG00000017780	YBX3	83	80.833	ENSPEMG00000010391	-	83	80.543	Peromyscus_maniculatus_bairdii
ENSGAGG00000017780	YBX3	72	75.781	ENSPCIG00000029949	YBX3	100	75.781	Phascolarctos_cinereus
ENSGAGG00000017780	YBX3	81	78.840	ENSPPYG00000004279	YBX3	78	79.381	Pongo_abelii
ENSGAGG00000017780	YBX3	59	81.690	ENSPCAG00000001397	YBX3	89	72.093	Procavia_capensis
ENSGAGG00000017780	YBX3	50	77.901	ENSPCOG00000011663	YBX3	90	67.391	Propithecus_coquereli
ENSGAGG00000017780	YBX3	88	64.241	ENSPVAG00000006740	YBX3	77	66.436	Pteropus_vampyrus
ENSGAGG00000017780	YBX3	78	88.596	ENSRNOG00000005480	Ybx3	93	71.598	Rattus_norvegicus
ENSGAGG00000017780	YBX3	77	83.857	ENSRBIG00000039208	YBX3	78	79.725	Rhinopithecus_bieti
ENSGAGG00000017780	YBX3	77	83.857	ENSRROG00000029638	YBX3	78	79.725	Rhinopithecus_roxellana
ENSGAGG00000017780	YBX3	96	70.201	ENSSBOG00000030573	YBX3	83	79.791	Saimiri_boliviensis_boliviensis
ENSGAGG00000017780	YBX3	68	98.837	ENSSHAG00000003262	YBX3	98	75.342	Sarcophilus_harrisii
ENSGAGG00000017780	YBX3	76	84.163	ENSSSCG00000000633	YBX3	83	72.727	Sus_scrofa
ENSGAGG00000017780	YBX3	74	98.077	ENSTGUG00000012047	YBX3	75	98.077	Taeniopygia_guttata
ENSGAGG00000017780	YBX3	100	67.033	ENSTBEG00000012570	YBX3	80	79.110	Tupaia_belangeri
ENSGAGG00000017780	YBX3	73	71.161	ENSTTRG00000008045	YBX3	100	71.161	Tursiops_truncatus
ENSGAGG00000017780	YBX3	77	76.173	ENSUAMG00000016662	YBX3	100	76.173	Ursus_americanus
ENSGAGG00000017780	YBX3	79	79.930	ENSUMAG00000016118	YBX3	94	79.720	Ursus_maritimus
ENSGAGG00000017780	YBX3	63	100.000	ENSVPAG00000000876	YBX3	100	61.268	Vicugna_pacos
ENSGAGG00000017780	YBX3	77	75.090	ENSVVUG00000004956	YBX3	100	75.451	Vulpes_vulpes
ENSGAGG00000017780	YBX3	75	75.000	ENSXETG00000016239	ybx3	89	71.493	Xenopus_tropicalis