EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAGG00000017812 (Gene tree)
Gene ID: -
Gene Symbol: LSM4
Alias: -
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Gopherus_agassizii
Status: putative
Strand: Plus strand
Length: 8183 bases
Position: chrPPEB01003995.1:77621-85803
Accession: 17259
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAGP00000024375	LSM	PF01423.22	9.6e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAGT00000027744	LSM4-201	1266	-	ENSGAGP00000024375	138 (aa)	-	UPI000388C55C

Gene Model

Click here to download ENSGAGG00000017812's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAGG00000017812's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAGG00000017812	LSM4	51	31.429	ENSGAGG00000024848	LSM10	56	31.429
ENSGAGG00000017812	LSM4	70	31.000	ENSGAGG00000012458	LSM2	82	35.000
ENSGAGG00000017812	LSM4	79	33.028	ENSGAGG00000023325	SNRPD3	56	34.722

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAGG00000017812	LSM4	100	89.928	ENSG00000130520	LSM4	100	82.014	Homo_sapiens
ENSGAGG00000017812	LSM4	72	97.980	ENSAPOG00000005643	lsm4	58	100.000	Acanthochromis_polyacanthus
ENSGAGG00000017812	LSM4	99	89.855	ENSAMEG00000011162	LSM4	95	81.884	Ailuropoda_melanoleuca
ENSGAGG00000017812	LSM4	72	97.980	ENSAOCG00000006414	lsm4	59	100.000	Amphiprion_ocellaris
ENSGAGG00000017812	LSM4	72	97.980	ENSAPEG00000006238	lsm4	59	100.000	Amphiprion_percula
ENSGAGG00000017812	LSM4	72	97.980	ENSATEG00000016559	lsm4	58	100.000	Anabas_testudineus
ENSGAGG00000017812	LSM4	100	89.928	ENSANAG00000034659	LSM4	100	82.014	Aotus_nancymaae
ENSGAGG00000017812	LSM4	96	83.571	ENSACLG00000022738	lsm4	60	100.000	Astatotilapia_calliptera
ENSGAGG00000017812	LSM4	96	91.791	ENSAMXG00000016932	lsm4	94	91.791	Astyanax_mexicanus
ENSGAGG00000017812	LSM4	100	89.928	ENSBTAG00000008578	LSM4	100	82.014	Bos_taurus
ENSGAGG00000017812	LSM4	60	75.904	WBGene00003078	lsm-4	67	75.904	Caenorhabditis_elegans
ENSGAGG00000017812	LSM4	100	89.928	ENSCJAG00000014171	LSM4	100	82.014	Callithrix_jacchus
ENSGAGG00000017812	LSM4	64	98.864	ENSCAFG00000014900	LSM4	90	81.884	Canis_familiaris
ENSGAGG00000017812	LSM4	100	89.928	ENSCAFG00020012137	LSM4	100	82.014	Canis_lupus_dingo
ENSGAGG00000017812	LSM4	99	89.855	ENSCHIG00000010928	LSM4	91	81.884	Capra_hircus
ENSGAGG00000017812	LSM4	100	89.209	ENSTSYG00000030906	LSM4	100	81.295	Carlito_syrichta
ENSGAGG00000017812	LSM4	100	88.489	ENSCAPG00000014140	LSM4	100	81.295	Cavia_aperea
ENSGAGG00000017812	LSM4	100	88.489	ENSCPOG00000024117	LSM4	100	81.295	Cavia_porcellus
ENSGAGG00000017812	LSM4	100	89.928	ENSCCAG00000036308	LSM4	100	82.014	Cebus_capucinus
ENSGAGG00000017812	LSM4	100	89.928	ENSCATG00000029311	LSM4	100	82.014	Cercocebus_atys
ENSGAGG00000017812	LSM4	100	88.489	ENSCLAG00000010828	LSM4	100	79.856	Chinchilla_lanigera
ENSGAGG00000017812	LSM4	100	89.928	ENSCSAG00000005370	LSM4	100	82.014	Chlorocebus_sabaeus
ENSGAGG00000017812	LSM4	100	100.000	ENSCPBG00000012925	LSM4	100	100.000	Chrysemys_picta_bellii
ENSGAGG00000017812	LSM4	62	93.023	ENSCING00000007519	-	69	93.182	Ciona_intestinalis
ENSGAGG00000017812	LSM4	62	93.023	ENSCSAVG00000008596	-	70	93.182	Ciona_savignyi
ENSGAGG00000017812	LSM4	100	89.928	ENSCANG00000043686	LSM4	100	82.014	Colobus_angolensis_palliatus
ENSGAGG00000017812	LSM4	100	76.087	ENSCGRG00001014436	Lsm4	100	76.087	Cricetulus_griseus_chok1gshd
ENSGAGG00000017812	LSM4	99	75.912	ENSCGRG00000009398	Lsm4	100	75.912	Cricetulus_griseus_crigri
ENSGAGG00000017812	LSM4	70	96.907	ENSCSEG00000016127	lsm4	94	85.926	Cynoglossus_semilaevis
ENSGAGG00000017812	LSM4	86	81.818	ENSCVAG00000021828	lsm4	56	98.630	Cyprinodon_variegatus
ENSGAGG00000017812	LSM4	96	83.824	ENSCVAG00000010601	lsm4	62	98.864	Cyprinodon_variegatus
ENSGAGG00000017812	LSM4	99	86.014	ENSDARG00000023852	lsm4	99	85.816	Danio_rerio
ENSGAGG00000017812	LSM4	100	88.489	ENSDORG00000024225	Lsm4	100	80.576	Dipodomys_ordii
ENSGAGG00000017812	LSM4	78	77.570	FBgn0032240	CG17768	57	87.500	Drosophila_melanogaster
ENSGAGG00000017812	LSM4	89	77.419	ENSETEG00000007762	-	100	79.839	Echinops_telfairi
ENSGAGG00000017812	LSM4	54	93.333	ENSEBUG00000003639	-	53	88.750	Eptatretus_burgeri
ENSGAGG00000017812	LSM4	100	79.856	ENSECAG00000010141	LSM4	57	82.014	Equus_caballus
ENSGAGG00000017812	LSM4	95	94.030	ENSELUG00000012821	lsm4	100	94.030	Esox_lucius
ENSGAGG00000017812	LSM4	100	89.928	ENSFCAG00000040580	LSM4	100	82.014	Felis_catus
ENSGAGG00000017812	LSM4	99	99.270	ENSFALG00000009478	LSM4	99	99.270	Ficedula_albicollis
ENSGAGG00000017812	LSM4	99	88.406	ENSFDAG00000010124	LSM4	100	81.159	Fukomys_damarensis
ENSGAGG00000017812	LSM4	70	98.958	ENSGMOG00000007729	lsm4	59	100.000	Gadus_morhua
ENSGAGG00000017812	LSM4	100	99.275	ENSGALG00000003385	LSM4	100	99.275	Gallus_gallus
ENSGAGG00000017812	LSM4	96	86.765	ENSGAFG00000004903	lsm4	55	95.890	Gambusia_affinis
ENSGAGG00000017812	LSM4	69	98.947	ENSGACG00000008140	lsm4	59	100.000	Gasterosteus_aculeatus
ENSGAGG00000017812	LSM4	100	89.928	ENSGGOG00000012914	-	100	82.014	Gorilla_gorilla
ENSGAGG00000017812	LSM4	96	84.173	ENSHBUG00000008858	lsm4	61	95.413	Haplochromis_burtoni
ENSGAGG00000017812	LSM4	100	84.892	ENSHGLG00000006568	LSM4	100	79.856	Heterocephalus_glaber_female
ENSGAGG00000017812	LSM4	67	97.849	ENSHGLG00100007894	LSM4	100	97.849	Heterocephalus_glaber_male
ENSGAGG00000017812	LSM4	96	88.148	ENSHCOG00000008819	lsm4	62	100.000	Hippocampus_comes
ENSGAGG00000017812	LSM4	96	91.791	ENSIPUG00000005368	Lsm4	94	91.791	Ictalurus_punctatus
ENSGAGG00000017812	LSM4	100	89.928	ENSSTOG00000016494	LSM4	100	82.014	Ictidomys_tridecemlineatus
ENSGAGG00000017812	LSM4	100	87.770	ENSJJAG00000017420	Lsm4	100	80.576	Jaculus_jaculus
ENSGAGG00000017812	LSM4	62	98.837	ENSKMAG00000005073	lsm4	61	98.864	Kryptolebias_marmoratus
ENSGAGG00000017812	LSM4	72	97.980	ENSLBEG00000027930	lsm4	59	100.000	Labrus_bergylta
ENSGAGG00000017812	LSM4	97	97.037	ENSLACG00000015861	LSM4	96	97.037	Latimeria_chalumnae
ENSGAGG00000017812	LSM4	96	93.985	ENSLOCG00000002025	lsm4	94	93.985	Lepisosteus_oculatus
ENSGAGG00000017812	LSM4	99	79.710	ENSLAFG00000017459	LSM4	99	81.884	Loxodonta_africana
ENSGAGG00000017812	LSM4	100	89.928	ENSMFAG00000031194	LSM4	100	82.014	Macaca_fascicularis
ENSGAGG00000017812	LSM4	100	89.928	ENSMMUG00000004405	LSM4	100	82.014	Macaca_mulatta
ENSGAGG00000017812	LSM4	100	89.928	ENSMNEG00000042899	LSM4	100	82.014	Macaca_nemestrina
ENSGAGG00000017812	LSM4	100	89.928	ENSMLEG00000027948	LSM4	100	82.014	Mandrillus_leucophaeus
ENSGAGG00000017812	LSM4	96	88.889	ENSMAMG00000006190	lsm4	94	80.597	Mastacembelus_armatus
ENSGAGG00000017812	LSM4	96	84.173	ENSMZEG00005016420	lsm4	60	100.000	Maylandia_zebra
ENSGAGG00000017812	LSM4	99	98.551	ENSMGAG00000004976	LSM4	99	98.551	Meleagris_gallopavo
ENSGAGG00000017812	LSM4	100	89.209	ENSMICG00000000222	LSM4	100	81.295	Microcebus_murinus
ENSGAGG00000017812	LSM4	100	76.087	ENSMOCG00000020861	Lsm4	100	76.087	Microtus_ochrogaster
ENSGAGG00000017812	LSM4	89	95.968	ENSMODG00000015044	-	100	95.968	Monodelphis_domestica
ENSGAGG00000017812	LSM4	96	83.088	ENSMALG00000018159	lsm4	62	98.864	Monopterus_albus
ENSGAGG00000017812	LSM4	100	76.087	MGP_CAROLIEiJ_G0031158	Lsm4	100	76.087	Mus_caroli
ENSGAGG00000017812	LSM4	100	76.087	ENSMUSG00000031848	Lsm4	100	76.087	Mus_musculus
ENSGAGG00000017812	LSM4	100	76.087	MGP_PahariEiJ_G0021623	Lsm4	100	76.087	Mus_pahari
ENSGAGG00000017812	LSM4	100	76.087	MGP_SPRETEiJ_G0032276	Lsm4	100	76.087	Mus_spretus
ENSGAGG00000017812	LSM4	100	89.928	ENSMPUG00000015589	LSM4	100	82.014	Mustela_putorius_furo
ENSGAGG00000017812	LSM4	99	89.855	ENSMLUG00000004010	LSM4	99	81.884	Myotis_lucifugus
ENSGAGG00000017812	LSM4	100	87.770	ENSNGAG00000008644	Lsm4	100	79.856	Nannospalax_galili
ENSGAGG00000017812	LSM4	71	97.959	ENSNBRG00000022150	lsm4	54	100.000	Neolamprologus_brichardi
ENSGAGG00000017812	LSM4	89	76.613	ENSMEUG00000013229	LSM4	100	78.226	Notamacropus_eugenii
ENSGAGG00000017812	LSM4	89	82.258	ENSOPRG00000005575	LSM4	100	73.984	Ochotona_princeps
ENSGAGG00000017812	LSM4	100	68.345	ENSODEG00000011712	-	100	68.345	Octodon_degus
ENSGAGG00000017812	LSM4	100	88.489	ENSODEG00000020549	-	100	80.576	Octodon_degus
ENSGAGG00000017812	LSM4	100	81.884	ENSODEG00000004519	-	100	71.942	Octodon_degus
ENSGAGG00000017812	LSM4	96	83.571	ENSONIG00000012724	lsm4	60	100.000	Oreochromis_niloticus
ENSGAGG00000017812	LSM4	80	93.913	ENSOANG00000007434	LSM4	99	93.913	Ornithorhynchus_anatinus
ENSGAGG00000017812	LSM4	100	86.232	ENSORLG00000008391	lsm4	95	83.333	Oryzias_latipes
ENSGAGG00000017812	LSM4	100	86.232	ENSORLG00020014829	lsm4	95	83.333	Oryzias_latipes_hni
ENSGAGG00000017812	LSM4	100	86.232	ENSORLG00015010205	lsm4	95	83.333	Oryzias_latipes_hsok
ENSGAGG00000017812	LSM4	100	85.507	ENSOMEG00000003606	lsm4	95	82.609	Oryzias_melastigma
ENSGAGG00000017812	LSM4	72	96.970	ENSOGAG00000027992	LSM4	89	80.769	Otolemur_garnettii
ENSGAGG00000017812	LSM4	63	98.851	ENSOARG00000012553	LSM4	94	80.672	Ovis_aries
ENSGAGG00000017812	LSM4	100	89.928	ENSPPAG00000044045	-	100	82.014	Pan_paniscus
ENSGAGG00000017812	LSM4	100	89.928	ENSPPRG00000018264	LSM4	100	82.014	Panthera_pardus
ENSGAGG00000017812	LSM4	99	89.855	ENSPTIG00000006306	LSM4	100	81.884	Panthera_tigris_altaica
ENSGAGG00000017812	LSM4	100	89.928	ENSPTRG00000031470	LSM4	100	82.014	Pan_troglodytes
ENSGAGG00000017812	LSM4	100	89.928	ENSPANG00000014399	LSM4	100	82.014	Papio_anubis
ENSGAGG00000017812	LSM4	96	93.233	ENSPKIG00000006154	lsm4	94	93.233	Paramormyrops_kingsleyae
ENSGAGG00000017812	LSM4	99	99.270	ENSPSIG00000012358	LSM4	100	99.270	Pelodiscus_sinensis
ENSGAGG00000017812	LSM4	100	76.087	ENSPEMG00000001358	Lsm4	100	76.087	Peromyscus_maniculatus_bairdii
ENSGAGG00000017812	LSM4	96	88.235	ENSPLAG00000016267	lsm4	62	100.000	Poecilia_latipinna
ENSGAGG00000017812	LSM4	96	87.500	ENSPMEG00000016378	lsm4	63	100.000	Poecilia_mexicana
ENSGAGG00000017812	LSM4	100	89.928	ENSPPYG00000009736	LSM4	100	82.014	Pongo_abelii
ENSGAGG00000017812	LSM4	89	77.419	ENSPCAG00000008513	LSM4	100	79.839	Procavia_capensis
ENSGAGG00000017812	LSM4	100	89.209	ENSPCOG00000019837	LSM4	100	81.295	Propithecus_coquereli
ENSGAGG00000017812	LSM4	100	89.928	ENSPVAG00000015383	LSM4	100	82.014	Pteropus_vampyrus
ENSGAGG00000017812	LSM4	96	84.173	ENSPNYG00000016794	lsm4	60	100.000	Pundamilia_nyererei
ENSGAGG00000017812	LSM4	96	89.474	ENSPNAG00000016598	lsm4	99	85.714	Pygocentrus_nattereri
ENSGAGG00000017812	LSM4	100	76.087	ENSRNOG00000019572	Lsm4	100	76.087	Rattus_norvegicus
ENSGAGG00000017812	LSM4	100	89.928	ENSRBIG00000024717	LSM4	100	82.014	Rhinopithecus_bieti
ENSGAGG00000017812	LSM4	100	89.928	ENSRROG00000045706	LSM4	100	82.014	Rhinopithecus_roxellana
ENSGAGG00000017812	LSM4	60	40.860	YER112W	LSM4	51	40.625	Saccharomyces_cerevisiae
ENSGAGG00000017812	LSM4	90	88.800	ENSSBOG00000022455	LSM4	100	80.000	Saimiri_boliviensis_boliviensis
ENSGAGG00000017812	LSM4	100	96.403	ENSSHAG00000011559	LSM4	100	96.403	Sarcophilus_harrisii
ENSGAGG00000017812	LSM4	96	90.977	ENSSFOG00015021067	lsm4	94	90.977	Scleropages_formosus
ENSGAGG00000017812	LSM4	72	96.970	ENSSMAG00000021020	lsm4	87	81.538	Scophthalmus_maximus
ENSGAGG00000017812	LSM4	72	97.980	ENSSDUG00000009588	lsm4	53	100.000	Seriola_dumerili
ENSGAGG00000017812	LSM4	72	97.980	ENSSLDG00000006827	lsm4	52	100.000	Seriola_lalandi_dorsalis
ENSGAGG00000017812	LSM4	93	84.848	ENSSPUG00000010166	LSM4	56	100.000	Sphenodon_punctatus
ENSGAGG00000017812	LSM4	72	97.980	ENSSPAG00000011615	lsm4	58	100.000	Stegastes_partitus
ENSGAGG00000017812	LSM4	100	89.928	ENSSSCG00000034314	LSM4	100	82.014	Sus_scrofa
ENSGAGG00000017812	LSM4	96	86.765	ENSTRUG00000021737	lsm4	62	97.727	Takifugu_rubripes
ENSGAGG00000017812	LSM4	96	84.559	ENSTNIG00000010191	lsm4	94	84.559	Tetraodon_nigroviridis
ENSGAGG00000017812	LSM4	99	89.855	ENSUAMG00000000665	LSM4	91	97.273	Ursus_americanus
ENSGAGG00000017812	LSM4	100	89.928	ENSUMAG00000009013	LSM4	100	82.014	Ursus_maritimus
ENSGAGG00000017812	LSM4	99	89.855	ENSVVUG00000008136	LSM4	71	81.884	Vulpes_vulpes
ENSGAGG00000017812	LSM4	100	94.928	ENSXETG00000024933	lsm4	100	94.928	Xenopus_tropicalis