EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAGG00000018194 (Gene tree)
Gene ID: -
Gene Symbol: RC3H1
Alias: KIAA2025|RNF198|RP5-1198E17.5|roquin
Full Name: ring finger and CCCH-type domains 1
Gene Type: protein_coding
Species: Gopherus_agassizii
Status: putative
Strand: Minus strand
Length: 108914 bases
Position: chrPPEB01000167.1:196674-305587
Accession: 29434
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAGP00000024904	zf-CCCH	PF00642.24	0.00021	1	1
ENSGAGP00000024899	zf-CCCH	PF00642.24	0.00023	1	1
ENSGAGP00000024893	zf-CCCH	PF00642.24	0.00024	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAGT00000028348	RC3H1-203	3688	-	ENSGAGP00000024904	1030 (aa)	-	-
ENSGAGT00000028343	RC3H1-202	3832	-	ENSGAGP00000024899	1078 (aa)	-	-
ENSGAGT00000028336	RC3H1-201	3970	-	ENSGAGP00000024893	1124 (aa)	-	-

Gene Model

Click here to download ENSGAGG00000018194's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAGG00000018194's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAGG00000018194	RC3H1	91	84.045	ENSGAGG00000018295	RC3H2	85	84.045

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAGG00000018194	RC3H1	100	88.967	ENSG00000135870	RC3H1	100	88.703	Homo_sapiens
ENSGAGG00000018194	RC3H1	100	87.621	ENSAMEG00000015657	RC3H1	100	87.709	Ailuropoda_melanoleuca
ENSGAGG00000018194	RC3H1	100	96.112	ENSAPLG00000005341	RC3H1	93	96.112	Anas_platyrhynchos
ENSGAGG00000018194	RC3H1	100	85.827	ENSACAG00000015271	RC3H1	93	95.248	Anolis_carolinensis
ENSGAGG00000018194	RC3H1	100	87.993	ENSANAG00000036716	RC3H1	100	87.818	Aotus_nancymaae
ENSGAGG00000018194	RC3H1	100	88.064	ENSBTAG00000052708	RC3H1	93	96.739	Bos_taurus
ENSGAGG00000018194	RC3H1	100	87.642	ENSCJAG00000009106	RC3H1	100	87.467	Callithrix_jacchus
ENSGAGG00000018194	RC3H1	100	87.533	ENSCAFG00000014434	RC3H1	100	87.709	Canis_familiaris
ENSGAGG00000018194	RC3H1	100	87.456	ENSCAFG00020017112	RC3H1	99	97.528	Canis_lupus_dingo
ENSGAGG00000018194	RC3H1	100	88.407	ENSCHIG00000002873	RC3H1	100	88.496	Capra_hircus
ENSGAGG00000018194	RC3H1	99	87.406	ENSTSYG00000003913	RC3H1	99	86.479	Carlito_syrichta
ENSGAGG00000018194	RC3H1	100	84.252	ENSCPOG00000004349	RC3H1	100	84.077	Cavia_porcellus
ENSGAGG00000018194	RC3H1	100	86.415	ENSCCAG00000025652	RC3H1	100	86.240	Cebus_capucinus
ENSGAGG00000018194	RC3H1	100	88.519	ENSCATG00000033497	RC3H1	100	88.256	Cercocebus_atys
ENSGAGG00000018194	RC3H1	100	86.216	ENSCLAG00000011267	RC3H1	100	85.953	Chinchilla_lanigera
ENSGAGG00000018194	RC3H1	96	88.665	ENSCSAG00000011823	RC3H1	85	88.391	Chlorocebus_sabaeus
ENSGAGG00000018194	RC3H1	100	97.681	ENSCPBG00000014670	RC3H1	100	97.681	Chrysemys_picta_bellii
ENSGAGG00000018194	RC3H1	100	88.529	ENSCANG00000032120	RC3H1	100	88.266	Colobus_angolensis_palliatus
ENSGAGG00000018194	RC3H1	100	85.777	ENSCGRG00001020812	Rc3h1	100	85.953	Cricetulus_griseus_chok1gshd
ENSGAGG00000018194	RC3H1	100	85.777	ENSCGRG00000011952	Rc3h1	100	85.953	Cricetulus_griseus_crigri
ENSGAGG00000018194	RC3H1	58	82.803	ENSDNOG00000011494	RC3H1	99	83.280	Dasypus_novemcinctus
ENSGAGG00000018194	RC3H1	100	86.907	ENSDORG00000004855	Rc3h1	100	87.258	Dipodomys_ordii
ENSGAGG00000018194	RC3H1	86	88.690	ENSETEG00000012064	RC3H1	87	89.167	Echinops_telfairi
ENSGAGG00000018194	RC3H1	100	87.876	ENSEASG00005017000	RC3H1	100	87.965	Equus_asinus_asinus
ENSGAGG00000018194	RC3H1	100	87.893	ENSECAG00000021208	RC3H1	100	87.985	Equus_caballus
ENSGAGG00000018194	RC3H1	89	80.891	ENSEEUG00000014861	RC3H1	93	80.891	Erinaceus_europaeus
ENSGAGG00000018194	RC3H1	100	87.895	ENSFCAG00000014924	RC3H1	100	87.982	Felis_catus
ENSGAGG00000018194	RC3H1	100	87.336	ENSFALG00000002947	RC3H1	100	87.424	Ficedula_albicollis
ENSGAGG00000018194	RC3H1	100	86.831	ENSFDAG00000013303	RC3H1	100	86.655	Fukomys_damarensis
ENSGAGG00000018194	RC3H1	100	96.522	ENSGALG00000004587	RC3H1	93	96.522	Gallus_gallus
ENSGAGG00000018194	RC3H1	100	82.559	ENSGGOG00000005735	RC3H1	100	82.296	Gorilla_gorilla
ENSGAGG00000018194	RC3H1	88	82.186	ENSHGLG00000004183	-	99	82.186	Heterocephalus_glaber_female
ENSGAGG00000018194	RC3H1	100	85.865	ENSHGLG00100008577	RC3H1	100	85.689	Heterocephalus_glaber_male
ENSGAGG00000018194	RC3H1	100	86.831	ENSSTOG00000016033	RC3H1	100	87.357	Ictidomys_tridecemlineatus
ENSGAGG00000018194	RC3H1	100	86.368	ENSJJAG00000018915	Rc3h1	100	86.544	Jaculus_jaculus
ENSGAGG00000018194	RC3H1	100	75.043	ENSLACG00000016186	RC3H1	100	78.975	Latimeria_chalumnae
ENSGAGG00000018194	RC3H1	97	88.043	ENSLAFG00000004367	RC3H1	100	88.315	Loxodonta_africana
ENSGAGG00000018194	RC3H1	100	88.606	ENSMFAG00000033725	RC3H1	100	88.344	Macaca_fascicularis
ENSGAGG00000018194	RC3H1	100	89.056	ENSMMUG00000000630	RC3H1	100	88.791	Macaca_mulatta
ENSGAGG00000018194	RC3H1	100	88.519	ENSMNEG00000035968	RC3H1	100	88.256	Macaca_nemestrina
ENSGAGG00000018194	RC3H1	100	88.606	ENSMLEG00000037455	RC3H1	100	88.344	Mandrillus_leucophaeus
ENSGAGG00000018194	RC3H1	100	84.181	ENSMAUG00000020864	Rc3h1	100	83.904	Mesocricetus_auratus
ENSGAGG00000018194	RC3H1	100	87.621	ENSMICG00000003000	RC3H1	100	87.796	Microcebus_murinus
ENSGAGG00000018194	RC3H1	93	84.181	ENSMOCG00000016587	Rc3h1	98	84.275	Microtus_ochrogaster
ENSGAGG00000018194	RC3H1	100	86.754	ENSMODG00000004289	RC3H1	93	96.522	Monodelphis_domestica
ENSGAGG00000018194	RC3H1	100	85.877	MGP_CAROLIEiJ_G0014756	Rc3h1	100	86.140	Mus_caroli
ENSGAGG00000018194	RC3H1	100	86.472	ENSMUSG00000040423	Rc3h1	100	86.472	Mus_musculus
ENSGAGG00000018194	RC3H1	100	86.140	MGP_PahariEiJ_G0027992	Rc3h1	100	86.053	Mus_pahari
ENSGAGG00000018194	RC3H1	100	86.472	MGP_SPRETEiJ_G0015563	Rc3h1	100	86.472	Mus_spretus
ENSGAGG00000018194	RC3H1	100	87.533	ENSMPUG00000004747	RC3H1	100	87.621	Mustela_putorius_furo
ENSGAGG00000018194	RC3H1	100	86.040	ENSMLUG00000011127	RC3H1	100	86.216	Myotis_lucifugus
ENSGAGG00000018194	RC3H1	100	86.831	ENSNGAG00000011135	Rc3h1	100	87.006	Nannospalax_galili
ENSGAGG00000018194	RC3H1	100	88.344	ENSNLEG00000015327	RC3H1	100	88.081	Nomascus_leucogenys
ENSGAGG00000018194	RC3H1	99	75.264	ENSOPRG00000013068	RC3H1	99	75.352	Ochotona_princeps
ENSGAGG00000018194	RC3H1	100	86.040	ENSODEG00000014185	RC3H1	100	86.304	Octodon_degus
ENSGAGG00000018194	RC3H1	100	96.739	ENSOANG00000000924	RC3H1	100	87.576	Ornithorhynchus_anatinus
ENSGAGG00000018194	RC3H1	99	86.999	ENSOCUG00000004930	RC3H1	98	87.266	Oryctolagus_cuniculus
ENSGAGG00000018194	RC3H1	100	80.719	ENSOGAG00000004044	RC3H1	100	80.894	Otolemur_garnettii
ENSGAGG00000018194	RC3H1	100	87.184	ENSOARG00000013011	RC3H1	100	87.271	Ovis_aries
ENSGAGG00000018194	RC3H1	100	88.354	ENSPPAG00000039253	RC3H1	100	88.091	Pan_paniscus
ENSGAGG00000018194	RC3H1	100	88.761	ENSPPRG00000009007	RC3H1	100	88.850	Panthera_pardus
ENSGAGG00000018194	RC3H1	100	87.413	ENSPTIG00000015326	RC3H1	100	87.587	Panthera_tigris_altaica
ENSGAGG00000018194	RC3H1	100	88.354	ENSPTRG00000001702	RC3H1	100	88.091	Pan_troglodytes
ENSGAGG00000018194	RC3H1	100	88.431	ENSPANG00000008886	RC3H1	100	88.168	Papio_anubis
ENSGAGG00000018194	RC3H1	100	96.957	ENSPSIG00000016181	RC3H1	100	93.363	Pelodiscus_sinensis
ENSGAGG00000018194	RC3H1	100	85.338	ENSPEMG00000011966	Rc3h1	100	85.601	Peromyscus_maniculatus_bairdii
ENSGAGG00000018194	RC3H1	76	87.668	ENSPCIG00000002058	RC3H1	95	98.206	Phascolarctos_cinereus
ENSGAGG00000018194	RC3H1	100	85.662	ENSPPYG00000000490	RC3H1	98	89.272	Pongo_abelii
ENSGAGG00000018194	RC3H1	80	97.368	ENSPCAG00000010775	RC3H1	87	97.368	Procavia_capensis
ENSGAGG00000018194	RC3H1	82	85.350	ENSPCOG00000021795	RC3H1	96	85.563	Propithecus_coquereli
ENSGAGG00000018194	RC3H1	100	78.980	ENSPVAG00000007593	RC3H1	100	79.595	Pteropus_vampyrus
ENSGAGG00000018194	RC3H1	97	90.466	ENSPNAG00000023439	rc3h1a	95	90.991	Pygocentrus_nattereri
ENSGAGG00000018194	RC3H1	100	88.441	ENSRBIG00000037743	RC3H1	100	88.179	Rhinopithecus_bieti
ENSGAGG00000018194	RC3H1	100	88.344	ENSRROG00000036546	RC3H1	100	88.081	Rhinopithecus_roxellana
ENSGAGG00000018194	RC3H1	93	87.984	ENSSBOG00000010664	RC3H1	100	87.686	Saimiri_boliviensis_boliviensis
ENSGAGG00000018194	RC3H1	100	86.340	ENSSHAG00000007589	RC3H1	93	96.522	Sarcophilus_harrisii
ENSGAGG00000018194	RC3H1	94	86.261	ENSSARG00000004660	RC3H1	86	86.261	Sorex_araneus
ENSGAGG00000018194	RC3H1	100	85.764	ENSSPUG00000018472	RC3H1	100	85.764	Sphenodon_punctatus
ENSGAGG00000018194	RC3H1	100	89.187	ENSSSCG00000015498	RC3H1	100	89.279	Sus_scrofa
ENSGAGG00000018194	RC3H1	100	87.796	ENSTGUG00000004090	RC3H1	100	87.884	Taeniopygia_guttata
ENSGAGG00000018194	RC3H1	90	89.702	ENSTBEG00000005015	RC3H1	88	90.244	Tupaia_belangeri
ENSGAGG00000018194	RC3H1	100	87.215	ENSTTRG00000008572	RC3H1	100	87.303	Tursiops_truncatus
ENSGAGG00000018194	RC3H1	100	87.094	ENSUAMG00000019525	RC3H1	100	87.182	Ursus_americanus
ENSGAGG00000018194	RC3H1	100	87.632	ENSUMAG00000020087	RC3H1	100	87.719	Ursus_maritimus
ENSGAGG00000018194	RC3H1	99	97.973	ENSVPAG00000002591	RC3H1	92	97.973	Vicugna_pacos
ENSGAGG00000018194	RC3H1	100	87.314	ENSVVUG00000014201	RC3H1	93	96.239	Vulpes_vulpes
ENSGAGG00000018194	RC3H1	100	90.909	ENSXETG00000020030	rc3h1	96	90.909	Xenopus_tropicalis