EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAGG00000019164 (Gene tree)
Gene ID: -
Gene Symbol: PSPC1
Alias: FLJ10955|PSP1
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Gopherus_agassizii
Status: putative
Strand: Plus strand
Length: 62072 bases
Position: chrPPEB01002707.1:29130-91201
Accession: 20320
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAGP00000026268	RRM_1	PF00076.22	3.3e-32	1	2
ENSGAGP00000026268	RRM_1	PF00076.22	3.3e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAGT00000029865	PSPC1-201	1572	-	ENSGAGP00000026268	523 (aa)	-	UPI000CEF73BA

Gene Model

Click here to download ENSGAGG00000019164's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAGG00000019164's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAGG00000019164	PSPC1	56	74.658	ENSGAGG00000025400	-	83	61.263
ENSGAGG00000019164	PSPC1	90	58.526	ENSGAGG00000017325	-	69	57.233

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAGG00000019164	PSPC1	89	94.218	ENSG00000121390	PSPC1	99	86.882	Homo_sapiens
ENSGAGG00000019164	PSPC1	90	68.712	ENSAPOG00000015946	pspc1	89	68.182	Acanthochromis_polyacanthus
ENSGAGG00000019164	PSPC1	99	88.031	ENSAMEG00000017420	PSPC1	99	86.692	Ailuropoda_melanoleuca
ENSGAGG00000019164	PSPC1	88	60.805	ENSACIG00000018695	pspc1	87	58.686	Amphilophus_citrinellus
ENSGAGG00000019164	PSPC1	90	67.828	ENSAOCG00000005279	pspc1	89	67.216	Amphiprion_ocellaris
ENSGAGG00000019164	PSPC1	90	68.476	ENSAPEG00000015927	pspc1	89	67.909	Amphiprion_percula
ENSGAGG00000019164	PSPC1	88	57.203	ENSATEG00000004878	pspc1	91	56.504	Anabas_testudineus
ENSGAGG00000019164	PSPC1	77	98.020	ENSAPLG00000006246	PSPC1	100	98.020	Anas_platyrhynchos
ENSGAGG00000019164	PSPC1	89	60.086	ENSAPLG00000003643	SFPQ	83	59.227	Anas_platyrhynchos
ENSGAGG00000019164	PSPC1	89	55.150	ENSACAG00000013307	-	67	56.009	Anolis_carolinensis
ENSGAGG00000019164	PSPC1	100	89.266	ENSACAG00000002093	PSPC1	100	88.641	Anolis_carolinensis
ENSGAGG00000019164	PSPC1	99	87.645	ENSANAG00000000059	PSPC1	99	87.885	Aotus_nancymaae
ENSGAGG00000019164	PSPC1	88	59.698	ENSACLG00000027220	pspc1	89	58.316	Astatotilapia_calliptera
ENSGAGG00000019164	PSPC1	99	66.914	ENSAMXG00000036881	pspc1	99	65.613	Astyanax_mexicanus
ENSGAGG00000019164	PSPC1	99	86.692	ENSBTAG00000003934	PSPC1	99	86.692	Bos_taurus
ENSGAGG00000019164	PSPC1	99	87.838	ENSCJAG00000004554	PSPC1	99	88.077	Callithrix_jacchus
ENSGAGG00000019164	PSPC1	99	87.838	ENSCAFG00020002009	PSPC1	99	86.692	Canis_lupus_dingo
ENSGAGG00000019164	PSPC1	99	86.692	ENSCHIG00000016708	PSPC1	99	86.692	Capra_hircus
ENSGAGG00000019164	PSPC1	80	83.452	ENSTSYG00000032882	PSPC1	93	81.517	Carlito_syrichta
ENSGAGG00000019164	PSPC1	99	86.692	ENSCPOG00000000395	PSPC1	99	87.072	Cavia_porcellus
ENSGAGG00000019164	PSPC1	99	87.645	ENSCCAG00000033498	PSPC1	99	87.885	Cebus_capucinus
ENSGAGG00000019164	PSPC1	89	94.004	ENSCATG00000036434	PSPC1	91	95.758	Cercocebus_atys
ENSGAGG00000019164	PSPC1	89	83.656	ENSCLAG00000005241	PSPC1	99	83.836	Chinchilla_lanigera
ENSGAGG00000019164	PSPC1	99	82.115	ENSCHOG00000008913	PSPC1	99	82.163	Choloepus_hoffmanni
ENSGAGG00000019164	PSPC1	100	99.809	ENSCPBG00000020859	PSPC1	100	99.809	Chrysemys_picta_bellii
ENSGAGG00000019164	PSPC1	59	60.129	ENSCSAVG00000003533	-	59	58.599	Ciona_savignyi
ENSGAGG00000019164	PSPC1	78	80.296	ENSCANG00000018948	PSPC1	87	96.198	Colobus_angolensis_palliatus
ENSGAGG00000019164	PSPC1	99	87.259	ENSCGRG00001018368	Pspc1	89	93.576	Cricetulus_griseus_chok1gshd
ENSGAGG00000019164	PSPC1	99	87.259	ENSCGRG00000011724	Pspc1	89	93.576	Cricetulus_griseus_crigri
ENSGAGG00000019164	PSPC1	91	64.151	ENSCVAG00000007679	-	90	63.017	Cyprinodon_variegatus
ENSGAGG00000019164	PSPC1	90	70.332	ENSDARG00000006621	pspc1	100	68.916	Danio_rerio
ENSGAGG00000019164	PSPC1	99	87.669	ENSDNOG00000011078	PSPC1	99	86.907	Dasypus_novemcinctus
ENSGAGG00000019164	PSPC1	99	83.365	ENSDORG00000016050	Pspc1	89	91.221	Dipodomys_ordii
ENSGAGG00000019164	PSPC1	55	97.030	ENSETEG00000000502	-	72	97.030	Echinops_telfairi
ENSGAGG00000019164	PSPC1	54	48.039	ENSEBUG00000010133	pspc1	72	50.909	Eptatretus_burgeri
ENSGAGG00000019164	PSPC1	90	56.800	ENSEBUG00000003964	-	65	68.975	Eptatretus_burgeri
ENSGAGG00000019164	PSPC1	99	87.429	ENSEASG00005000119	PSPC1	99	87.619	Equus_asinus_asinus
ENSGAGG00000019164	PSPC1	99	87.429	ENSECAG00000017286	PSPC1	99	87.619	Equus_caballus
ENSGAGG00000019164	PSPC1	72	81.967	ENSEEUG00000011288	-	72	81.967	Erinaceus_europaeus
ENSGAGG00000019164	PSPC1	99	66.174	ENSELUG00000003746	pspc1	94	71.100	Esox_lucius
ENSGAGG00000019164	PSPC1	99	87.097	ENSFCAG00000027841	PSPC1	99	86.882	Felis_catus
ENSGAGG00000019164	PSPC1	100	93.762	ENSFALG00000008750	PSPC1	100	95.841	Ficedula_albicollis
ENSGAGG00000019164	PSPC1	99	87.814	ENSFDAG00000002617	PSPC1	99	87.814	Fukomys_damarensis
ENSGAGG00000019164	PSPC1	88	66.595	ENSGMOG00000015074	pspc1	86	65.665	Gadus_morhua
ENSGAGG00000019164	PSPC1	100	96.756	ENSGALG00000017142	PSPC1	100	96.756	Gallus_gallus
ENSGAGG00000019164	PSPC1	62	77.231	ENSGAFG00000006327	pspc1	67	77.231	Gambusia_affinis
ENSGAGG00000019164	PSPC1	88	64.946	ENSGACG00000014901	pspc1	94	71.429	Gasterosteus_aculeatus
ENSGAGG00000019164	PSPC1	89	94.004	ENSGGOG00000003414	PSPC1	99	86.692	Gorilla_gorilla
ENSGAGG00000019164	PSPC1	88	68.951	ENSHBUG00000001139	pspc1	87	68.522	Haplochromis_burtoni
ENSGAGG00000019164	PSPC1	99	86.692	ENSHGLG00000018811	PSPC1	99	86.692	Heterocephalus_glaber_female
ENSGAGG00000019164	PSPC1	66	86.782	ENSHGLG00100007962	PSPC1	89	97.603	Heterocephalus_glaber_male
ENSGAGG00000019164	PSPC1	72	70.419	ENSHCOG00000013251	pspc1	85	68.586	Hippocampus_comes
ENSGAGG00000019164	PSPC1	99	66.979	ENSIPUG00000013192	pspc1	99	66.419	Ictalurus_punctatus
ENSGAGG00000019164	PSPC1	99	86.578	ENSSTOG00000026833	PSPC1	99	86.957	Ictidomys_tridecemlineatus
ENSGAGG00000019164	PSPC1	99	87.259	ENSJJAG00000018334	Pspc1	99	86.174	Jaculus_jaculus
ENSGAGG00000019164	PSPC1	88	53.277	ENSKMAG00000013525	-	99	50.844	Kryptolebias_marmoratus
ENSGAGG00000019164	PSPC1	90	65.041	ENSLBEG00000004474	pspc1	75	70.913	Labrus_bergylta
ENSGAGG00000019164	PSPC1	99	79.771	ENSLACG00000010762	PSPC1	99	79.924	Latimeria_chalumnae
ENSGAGG00000019164	PSPC1	99	79.191	ENSLOCG00000010832	pspc1	99	79.191	Lepisosteus_oculatus
ENSGAGG00000019164	PSPC1	99	88.031	ENSLAFG00000010968	PSPC1	99	87.121	Loxodonta_africana
ENSGAGG00000019164	PSPC1	89	94.004	ENSMFAG00000032728	PSPC1	92	95.770	Macaca_fascicularis
ENSGAGG00000019164	PSPC1	89	94.004	ENSMMUG00000020262	PSPC1	99	86.692	Macaca_mulatta
ENSGAGG00000019164	PSPC1	89	94.004	ENSMNEG00000027401	PSPC1	99	86.692	Macaca_nemestrina
ENSGAGG00000019164	PSPC1	76	94.000	ENSMLEG00000039043	PSPC1	94	94.000	Mandrillus_leucophaeus
ENSGAGG00000019164	PSPC1	90	66.397	ENSMAMG00000004333	pspc1	82	69.180	Mastacembelus_armatus
ENSGAGG00000019164	PSPC1	88	59.698	ENSMZEG00005005726	pspc1	89	58.316	Maylandia_zebra
ENSGAGG00000019164	PSPC1	78	97.537	ENSMGAG00000015134	PSPC1	100	97.537	Meleagris_gallopavo
ENSGAGG00000019164	PSPC1	87	81.370	ENSMAUG00000021067	Pspc1	87	88.670	Mesocricetus_auratus
ENSGAGG00000019164	PSPC1	99	88.031	ENSMICG00000013970	PSPC1	99	86.717	Microcebus_murinus
ENSGAGG00000019164	PSPC1	99	87.066	ENSMOCG00000006060	Pspc1	99	85.795	Microtus_ochrogaster
ENSGAGG00000019164	PSPC1	90	44.000	ENSMMOG00000004352	pspc1	59	52.537	Mola_mola
ENSGAGG00000019164	PSPC1	82	94.186	ENSMODG00000008029	PSPC1	78	86.475	Monodelphis_domestica
ENSGAGG00000019164	PSPC1	88	68.094	ENSMALG00000008914	pspc1	89	66.876	Monopterus_albus
ENSGAGG00000019164	PSPC1	99	87.259	MGP_CAROLIEiJ_G0019341	Pspc1	99	85.985	Mus_caroli
ENSGAGG00000019164	PSPC1	99	87.452	ENSMUSG00000021938	Pspc1	99	86.174	Mus_musculus
ENSGAGG00000019164	PSPC1	99	87.259	MGP_PahariEiJ_G0030359	Pspc1	99	85.985	Mus_pahari
ENSGAGG00000019164	PSPC1	99	86.364	MGP_SPRETEiJ_G0020232	Pspc1	99	86.364	Mus_spretus
ENSGAGG00000019164	PSPC1	99	86.907	ENSMPUG00000013347	PSPC1	99	86.882	Mustela_putorius_furo
ENSGAGG00000019164	PSPC1	99	86.389	ENSMLUG00000017663	PSPC1	90	93.617	Myotis_lucifugus
ENSGAGG00000019164	PSPC1	99	87.838	ENSNGAG00000011271	Pspc1	99	85.985	Nannospalax_galili
ENSGAGG00000019164	PSPC1	62	68.519	ENSNBRG00000014059	pspc1	76	69.444	Neolamprologus_brichardi
ENSGAGG00000019164	PSPC1	89	94.218	ENSNLEG00000001294	PSPC1	89	94.218	Nomascus_leucogenys
ENSGAGG00000019164	PSPC1	74	96.000	ENSMEUG00000000476	PSPC1	83	79.693	Notamacropus_eugenii
ENSGAGG00000019164	PSPC1	99	76.046	ENSODEG00000007817	-	99	76.426	Octodon_degus
ENSGAGG00000019164	PSPC1	89	82.390	ENSODEG00000019012	-	99	78.026	Octodon_degus
ENSGAGG00000019164	PSPC1	88	69.444	ENSONIG00000012010	pspc1	87	67.227	Oreochromis_niloticus
ENSGAGG00000019164	PSPC1	90	67.722	ENSOANG00000011381	-	94	66.667	Ornithorhynchus_anatinus
ENSGAGG00000019164	PSPC1	76	94.000	ENSOANG00000009017	-	100	94.000	Ornithorhynchus_anatinus
ENSGAGG00000019164	PSPC1	89	94.218	ENSOCUG00000006153	PSPC1	99	86.200	Oryctolagus_cuniculus
ENSGAGG00000019164	PSPC1	88	69.165	ENSORLG00000004232	-	87	65.756	Oryzias_latipes
ENSGAGG00000019164	PSPC1	90	68.842	ENSORLG00020000578	PSPC1	88	65.496	Oryzias_latipes_hni
ENSGAGG00000019164	PSPC1	90	68.842	ENSORLG00015017480	pspc1	88	65.289	Oryzias_latipes_hsok
ENSGAGG00000019164	PSPC1	99	88.077	ENSOGAG00000012643	PSPC1	99	87.452	Otolemur_garnettii
ENSGAGG00000019164	PSPC1	88	93.913	ENSOARG00000014163	PSPC1	95	91.522	Ovis_aries
ENSGAGG00000019164	PSPC1	90	87.234	ENSPPAG00000009836	PSPC1	93	96.353	Pan_paniscus
ENSGAGG00000019164	PSPC1	99	87.097	ENSPPRG00000008833	PSPC1	99	86.882	Panthera_pardus
ENSGAGG00000019164	PSPC1	76	94.250	ENSPTIG00000016917	PSPC1	84	94.250	Panthera_tigris_altaica
ENSGAGG00000019164	PSPC1	82	94.651	ENSPTRG00000005677	PSPC1	98	86.708	Pan_troglodytes
ENSGAGG00000019164	PSPC1	89	94.004	ENSPANG00000001992	PSPC1	91	95.770	Papio_anubis
ENSGAGG00000019164	PSPC1	81	77.700	ENSPKIG00000003578	pspc1	89	73.895	Paramormyrops_kingsleyae
ENSGAGG00000019164	PSPC1	100	94.857	ENSPSIG00000005168	PSPC1	100	96.190	Pelodiscus_sinensis
ENSGAGG00000019164	PSPC1	57	71.000	ENSPMGG00000015135	pspc1	82	71.141	Periophthalmus_magnuspinnatus
ENSGAGG00000019164	PSPC1	99	87.452	ENSPEMG00000015214	Pspc1	99	85.985	Peromyscus_maniculatus_bairdii
ENSGAGG00000019164	PSPC1	89	94.017	ENSPCIG00000017680	PSPC1	99	86.882	Phascolarctos_cinereus
ENSGAGG00000019164	PSPC1	88	68.153	ENSPFOG00000003362	pspc1	88	67.234	Poecilia_formosa
ENSGAGG00000019164	PSPC1	88	68.153	ENSPLAG00000011540	pspc1	87	67.234	Poecilia_latipinna
ENSGAGG00000019164	PSPC1	67	67.521	ENSPLAG00000004407	-	50	67.521	Poecilia_latipinna
ENSGAGG00000019164	PSPC1	88	67.728	ENSPMEG00000008322	pspc1	87	66.809	Poecilia_mexicana
ENSGAGG00000019164	PSPC1	67	67.521	ENSPMEG00000001025	-	50	67.521	Poecilia_mexicana
ENSGAGG00000019164	PSPC1	88	67.728	ENSPREG00000007786	pspc1	87	66.809	Poecilia_reticulata
ENSGAGG00000019164	PSPC1	89	93.991	ENSPPYG00000005186	PSPC1	99	86.832	Pongo_abelii
ENSGAGG00000019164	PSPC1	65	95.732	ENSPCAG00000008314	-	66	95.732	Procavia_capensis
ENSGAGG00000019164	PSPC1	99	83.462	ENSPCOG00000014364	PSPC1	99	82.231	Propithecus_coquereli
ENSGAGG00000019164	PSPC1	99	85.880	ENSPVAG00000005036	PSPC1	99	86.476	Pteropus_vampyrus
ENSGAGG00000019164	PSPC1	88	59.698	ENSPNYG00000008893	pspc1	89	58.316	Pundamilia_nyererei
ENSGAGG00000019164	PSPC1	99	67.358	ENSPNAG00000016511	pspc1	99	67.736	Pygocentrus_nattereri
ENSGAGG00000019164	PSPC1	99	85.795	ENSRNOG00000020782	Pspc1	99	85.795	Rattus_norvegicus
ENSGAGG00000019164	PSPC1	91	93.096	ENSRBIG00000036057	PSPC1	98	93.096	Rhinopithecus_bieti
ENSGAGG00000019164	PSPC1	91	93.096	ENSRROG00000036334	PSPC1	99	86.441	Rhinopithecus_roxellana
ENSGAGG00000019164	PSPC1	79	83.575	ENSSBOG00000028172	PSPC1	90	91.697	Saimiri_boliviensis_boliviensis
ENSGAGG00000019164	PSPC1	89	88.298	ENSSHAG00000004696	PSPC1	99	81.818	Sarcophilus_harrisii
ENSGAGG00000019164	PSPC1	81	76.995	ENSSFOG00015001395	pspc1	99	72.956	Scleropages_formosus
ENSGAGG00000019164	PSPC1	88	66.385	ENSSMAG00000001761	pspc1	82	75.455	Scophthalmus_maximus
ENSGAGG00000019164	PSPC1	88	68.016	ENSSDUG00000010651	pspc1	75	74.645	Seriola_dumerili
ENSGAGG00000019164	PSPC1	88	63.499	ENSSLDG00000004284	pspc1	86	60.554	Seriola_lalandi_dorsalis
ENSGAGG00000019164	PSPC1	89	87.152	ENSSARG00000000888	PSPC1	99	81.250	Sorex_araneus
ENSGAGG00000019164	PSPC1	99	83.206	ENSSPUG00000008550	PSPC1	99	83.588	Sphenodon_punctatus
ENSGAGG00000019164	PSPC1	89	54.140	ENSSPUG00000001136	-	53	61.517	Sphenodon_punctatus
ENSGAGG00000019164	PSPC1	90	67.203	ENSSPAG00000001921	pspc1	76	73.095	Stegastes_partitus
ENSGAGG00000019164	PSPC1	99	86.717	ENSSSCG00000009569	PSPC1	99	87.097	Sus_scrofa
ENSGAGG00000019164	PSPC1	89	99.143	ENSTGUG00000011295	PSPC1	100	99.143	Taeniopygia_guttata
ENSGAGG00000019164	PSPC1	89	62.869	ENSTRUG00000011335	pspc1	88	62.473	Takifugu_rubripes
ENSGAGG00000019164	PSPC1	88	64.454	ENSTNIG00000010358	pspc1	92	61.284	Tetraodon_nigroviridis
ENSGAGG00000019164	PSPC1	89	74.090	ENSTBEG00000002361	PSPC1	94	70.243	Tupaia_belangeri
ENSGAGG00000019164	PSPC1	99	87.048	ENSTTRG00000003343	PSPC1	99	87.048	Tursiops_truncatus
ENSGAGG00000019164	PSPC1	66	87.536	ENSUAMG00000012309	PSPC1	98	85.755	Ursus_americanus
ENSGAGG00000019164	PSPC1	89	94.004	ENSUMAG00000013993	PSPC1	96	94.004	Ursus_maritimus
ENSGAGG00000019164	PSPC1	76	94.250	ENSVPAG00000010029	PSPC1	100	94.250	Vicugna_pacos
ENSGAGG00000019164	PSPC1	99	87.838	ENSVVUG00000006414	PSPC1	99	86.692	Vulpes_vulpes
ENSGAGG00000019164	PSPC1	62	76.074	ENSXCOG00000017438	pspc1	77	76.074	Xiphophorus_couchianus
ENSGAGG00000019164	PSPC1	62	76.380	ENSXMAG00000007929	pspc1	77	76.380	Xiphophorus_maculatus