EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGAGG00000019861 (Gene tree)
Gene ID: -
Gene Symbol: CMSS1
Alias: C3orf26|MGC4308
Full Name: cms1 ribosomal small subunit homolog
Gene Type: protein_coding
Species: Gopherus_agassizii
Status: putative
Strand: Minus strand
Length: 172778 bases
Position: chrPPEB01000534.1:134231-307008
Accession: 28666
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAGP00000027320	CMS1	PF14617.6	1.7e-34	1	1
ENSGAGP00000027324	CMS1	PF14617.6	1.7e-34	1	1
ENSGAGP00000027318	CMS1	PF14617.6	1.9e-34	1	1
ENSGAGP00000027325	CMS1	PF14617.6	2e-34	1	1
ENSGAGP00000027326	CMS1	PF14617.6	2e-34	1	1
ENSGAGP00000027329	CMS1	PF14617.6	2e-34	1	1
ENSGAGP00000027320	DEAD	PF00270.29	8.3e-07	1	1
ENSGAGP00000027324	DEAD	PF00270.29	8.3e-07	1	1
ENSGAGP00000027318	DEAD	PF00270.29	9e-07	1	1
ENSGAGP00000027325	DEAD	PF00270.29	9.4e-07	1	1
ENSGAGP00000027326	DEAD	PF00270.29	9.4e-07	1	1
ENSGAGP00000027329	DEAD	PF00270.29	9.4e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAGT00000031031	CMSS1-202	1539	-	ENSGAGP00000027320	257 (aa)	-	-
ENSGAGT00000031035	CMSS1-203	1216	-	ENSGAGP00000027324	257 (aa)	-	-
ENSGAGT00000031036	CMSS1-204	1219	-	ENSGAGP00000027325	272 (aa)	-	-
ENSGAGT00000031038	CMSS1-205	1219	-	ENSGAGP00000027326	272 (aa)	-	-
ENSGAGT00000031029	CMSS1-201	1024	-	ENSGAGP00000027318	266 (aa)	-	-
ENSGAGT00000031041	CMSS1-206	1219	-	ENSGAGP00000027329	272 (aa)	-	-

Gene Model

Click here to download ENSGAGG00000019861's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAGG00000019861's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAGG00000019861	CMSS1	92	70.042	ENSG00000184220	CMSS1	99	77.778	Homo_sapiens
ENSGAGG00000019861	CMSS1	79	65.347	ENSAPOG00000010604	cmss1	100	57.031	Acanthochromis_polyacanthus
ENSGAGG00000019861	CMSS1	96	67.871	ENSAMEG00000004092	CMSS1	96	67.871	Ailuropoda_melanoleuca
ENSGAGG00000019861	CMSS1	79	55.446	ENSACIG00000021854	cmss1	91	52.675	Amphilophus_citrinellus
ENSGAGG00000019861	CMSS1	79	64.356	ENSAOCG00000013361	cmss1	70	64.356	Amphiprion_ocellaris
ENSGAGG00000019861	CMSS1	79	64.356	ENSAPEG00000005829	cmss1	70	64.356	Amphiprion_percula
ENSGAGG00000019861	CMSS1	80	65.049	ENSATEG00000008209	cmss1	99	52.768	Anabas_testudineus
ENSGAGG00000019861	CMSS1	89	81.304	ENSAPLG00000010542	CMSS1	100	81.304	Anas_platyrhynchos
ENSGAGG00000019861	CMSS1	100	73.180	ENSACAG00000011065	CMSS1	98	72.862	Anolis_carolinensis
ENSGAGG00000019861	CMSS1	92	70.464	ENSANAG00000023565	CMSS1	90	70.464	Aotus_nancymaae
ENSGAGG00000019861	CMSS1	79	63.861	ENSACLG00000027294	cmss1	84	59.671	Astatotilapia_calliptera
ENSGAGG00000019861	CMSS1	88	55.652	ENSAMXG00000002046	cmss1	92	50.923	Astyanax_mexicanus
ENSGAGG00000019861	CMSS1	94	68.182	ENSBTAG00000013663	CMSS1	88	68.182	Bos_taurus
ENSGAGG00000019861	CMSS1	99	65.909	ENSCJAG00000000610	CMSS1	100	63.929	Callithrix_jacchus
ENSGAGG00000019861	CMSS1	92	70.886	ENSCAFG00000009230	CMSS1	86	70.886	Canis_familiaris
ENSGAGG00000019861	CMSS1	92	70.886	ENSCAFG00020009464	-	86	70.886	Canis_lupus_dingo
ENSGAGG00000019861	CMSS1	79	69.802	ENSCAFG00020024156	-	62	69.802	Canis_lupus_dingo
ENSGAGG00000019861	CMSS1	94	69.008	ENSCHIG00000013003	CMSS1	88	69.008	Capra_hircus
ENSGAGG00000019861	CMSS1	99	62.825	ENSTSYG00000009266	CMSS1	98	62.825	Carlito_syrichta
ENSGAGG00000019861	CMSS1	87	58.744	ENSCAPG00000013584	CMSS1	87	64.516	Cavia_aperea
ENSGAGG00000019861	CMSS1	99	64.045	ENSCPOG00000014680	CMSS1	100	62.724	Cavia_porcellus
ENSGAGG00000019861	CMSS1	100	63.929	ENSCCAG00000034685	CMSS1	100	63.929	Cebus_capucinus
ENSGAGG00000019861	CMSS1	92	70.042	ENSCATG00000031980	CMSS1	91	70.042	Cercocebus_atys
ENSGAGG00000019861	CMSS1	89	72.489	ENSCLAG00000011241	CMSS1	98	72.489	Chinchilla_lanigera
ENSGAGG00000019861	CMSS1	92	70.042	ENSCSAG00000006024	CMSS1	97	70.042	Chlorocebus_sabaeus
ENSGAGG00000019861	CMSS1	98	48.000	ENSCHOG00000012098	CMSS1	99	48.000	Choloepus_hoffmanni
ENSGAGG00000019861	CMSS1	87	41.150	ENSCING00000014848	-	99	44.385	Ciona_intestinalis
ENSGAGG00000019861	CMSS1	100	62.366	ENSCANG00000031337	CMSS1	91	69.620	Colobus_angolensis_palliatus
ENSGAGG00000019861	CMSS1	99	65.909	ENSCGRG00001014305	Cmss1	93	65.909	Cricetulus_griseus_chok1gshd
ENSGAGG00000019861	CMSS1	99	66.540	ENSCGRG00000006722	Cmss1	100	66.540	Cricetulus_griseus_crigri
ENSGAGG00000019861	CMSS1	79	66.337	ENSCSEG00000004958	cmss1	95	55.516	Cynoglossus_semilaevis
ENSGAGG00000019861	CMSS1	79	64.851	ENSCVAG00000005039	cmss1	94	53.763	Cyprinodon_variegatus
ENSGAGG00000019861	CMSS1	88	55.411	ENSDARG00000112579	cmss1	91	51.661	Danio_rerio
ENSGAGG00000019861	CMSS1	99	63.258	ENSDNOG00000040418	CMSS1	95	63.359	Dasypus_novemcinctus
ENSGAGG00000019861	CMSS1	92	71.730	ENSDORG00000010461	Cmss1	85	71.730	Dipodomys_ordii
ENSGAGG00000019861	CMSS1	51	51.515	ENSEBUG00000002156	-	96	51.515	Eptatretus_burgeri
ENSGAGG00000019861	CMSS1	99	64.231	ENSEASG00005010966	CMSS1	99	69.863	Equus_asinus_asinus
ENSGAGG00000019861	CMSS1	92	68.776	ENSECAG00000015662	CMSS1	99	69.469	Equus_caballus
ENSGAGG00000019861	CMSS1	89	49.561	ENSEEUG00000007624	-	82	50.000	Erinaceus_europaeus
ENSGAGG00000019861	CMSS1	79	62.376	ENSELUG00000019459	cmss1	91	54.044	Esox_lucius
ENSGAGG00000019861	CMSS1	92	71.308	ENSFCAG00000044577	CMSS1	85	71.308	Felis_catus
ENSGAGG00000019861	CMSS1	89	78.603	ENSFALG00000005816	CMSS1	97	78.603	Ficedula_albicollis
ENSGAGG00000019861	CMSS1	89	70.175	ENSFDAG00000012577	CMSS1	100	70.175	Fukomys_damarensis
ENSGAGG00000019861	CMSS1	88	59.130	ENSFHEG00000012008	cmss1	95	59.130	Fundulus_heteroclitus
ENSGAGG00000019861	CMSS1	79	61.881	ENSGMOG00000016729	cmss1	94	54.167	Gadus_morhua
ENSGAGG00000019861	CMSS1	99	77.165	ENSGALG00000015267	CMSS1	100	76.226	Gallus_gallus
ENSGAGG00000019861	CMSS1	81	64.251	ENSGAFG00000021217	cmss1	77	64.356	Gambusia_affinis
ENSGAGG00000019861	CMSS1	85	58.716	ENSGACG00000002798	cmss1	93	51.698	Gasterosteus_aculeatus
ENSGAGG00000019861	CMSS1	92	70.886	ENSGGOG00000014125	CMSS1	91	70.886	Gorilla_gorilla
ENSGAGG00000019861	CMSS1	79	63.861	ENSHBUG00000008431	cmss1	86	59.504	Haplochromis_burtoni
ENSGAGG00000019861	CMSS1	88	71.681	ENSHGLG00000019481	CMSS1	92	71.681	Heterocephalus_glaber_female
ENSGAGG00000019861	CMSS1	88	71.681	ENSHGLG00100010314	CMSS1	91	71.681	Heterocephalus_glaber_male
ENSGAGG00000019861	CMSS1	79	62.871	ENSHCOG00000003222	cmss1	95	53.763	Hippocampus_comes
ENSGAGG00000019861	CMSS1	86	60.000	ENSIPUG00000011591	cmss1	90	53.992	Ictalurus_punctatus
ENSGAGG00000019861	CMSS1	99	65.789	ENSSTOG00000019366	CMSS1	92	65.789	Ictidomys_tridecemlineatus
ENSGAGG00000019861	CMSS1	98	64.885	ENSJJAG00000014894	Cmss1	90	71.782	Jaculus_jaculus
ENSGAGG00000019861	CMSS1	79	58.911	ENSKMAG00000002390	cmss1	81	58.911	Kryptolebias_marmoratus
ENSGAGG00000019861	CMSS1	79	59.113	ENSLBEG00000006298	cmss1	99	49.071	Labrus_bergylta
ENSGAGG00000019861	CMSS1	89	68.261	ENSLACG00000009293	CMSS1	100	68.261	Latimeria_chalumnae
ENSGAGG00000019861	CMSS1	99	51.282	ENSLOCG00000009391	cmss1	94	54.511	Lepisosteus_oculatus
ENSGAGG00000019861	CMSS1	89	69.737	ENSLAFG00000017509	CMSS1	100	69.737	Loxodonta_africana
ENSGAGG00000019861	CMSS1	100	63.082	ENSMFAG00000045006	CMSS1	91	70.464	Macaca_fascicularis
ENSGAGG00000019861	CMSS1	100	62.724	ENSMMUG00000002939	CMSS1	98	71.818	Macaca_mulatta
ENSGAGG00000019861	CMSS1	100	63.082	ENSMNEG00000031315	CMSS1	100	63.082	Macaca_nemestrina
ENSGAGG00000019861	CMSS1	100	62.724	ENSMLEG00000033660	CMSS1	91	70.042	Mandrillus_leucophaeus
ENSGAGG00000019861	CMSS1	79	63.861	ENSMAMG00000017176	cmss1	70	63.861	Mastacembelus_armatus
ENSGAGG00000019861	CMSS1	79	63.861	ENSMZEG00005021886	cmss1	84	59.671	Maylandia_zebra
ENSGAGG00000019861	CMSS1	89	80.263	ENSMGAG00000014360	CMSS1	100	80.263	Meleagris_gallopavo
ENSGAGG00000019861	CMSS1	94	49.383	ENSMAUG00000020609	Cmss1	84	49.383	Mesocricetus_auratus
ENSGAGG00000019861	CMSS1	92	69.198	ENSMICG00000048977	CMSS1	91	69.198	Microcebus_murinus
ENSGAGG00000019861	CMSS1	94	69.835	ENSMOCG00000021937	Cmss1	87	69.835	Microtus_ochrogaster
ENSGAGG00000019861	CMSS1	79	63.366	ENSMMOG00000019794	cmss1	96	57.741	Mola_mola
ENSGAGG00000019861	CMSS1	99	70.342	ENSMODG00000002275	CMSS1	97	70.342	Monodelphis_domestica
ENSGAGG00000019861	CMSS1	79	65.842	ENSMALG00000004250	cmss1	96	53.237	Monopterus_albus
ENSGAGG00000019861	CMSS1	100	65.217	MGP_CAROLIEiJ_G0020824	Cmss1	100	65.217	Mus_caroli
ENSGAGG00000019861	CMSS1	100	65.217	ENSMUSG00000022748	Cmss1	100	65.217	Mus_musculus
ENSGAGG00000019861	CMSS1	91	71.795	MGP_PahariEiJ_G0016524	Cmss1	85	71.795	Mus_pahari
ENSGAGG00000019861	CMSS1	94	70.782	MGP_SPRETEiJ_G0021724	Cmss1	87	70.782	Mus_spretus
ENSGAGG00000019861	CMSS1	94	70.124	ENSMPUG00000011324	CMSS1	91	71.610	Mustela_putorius_furo
ENSGAGG00000019861	CMSS1	94	68.852	ENSMLUG00000001131	CMSS1	91	70.293	Myotis_lucifugus
ENSGAGG00000019861	CMSS1	100	64.286	ENSNGAG00000020316	Cmss1	92	65.267	Nannospalax_galili
ENSGAGG00000019861	CMSS1	79	63.861	ENSNBRG00000003095	cmss1	84	59.671	Neolamprologus_brichardi
ENSGAGG00000019861	CMSS1	100	63.441	ENSNLEG00000034172	CMSS1	100	63.441	Nomascus_leucogenys
ENSGAGG00000019861	CMSS1	89	63.596	ENSMEUG00000014505	CMSS1	100	63.596	Notamacropus_eugenii
ENSGAGG00000019861	CMSS1	99	66.920	ENSOPRG00000002986	CMSS1	87	71.074	Ochotona_princeps
ENSGAGG00000019861	CMSS1	94	58.264	ENSODEG00000001853	-	87	58.264	Octodon_degus
ENSGAGG00000019861	CMSS1	93	55.556	ENSODEG00000009446	-	78	61.881	Octodon_degus
ENSGAGG00000019861	CMSS1	96	64.516	ENSODEG00000003558	-	91	64.516	Octodon_degus
ENSGAGG00000019861	CMSS1	94	68.595	ENSODEG00000005226	-	87	68.595	Octodon_degus
ENSGAGG00000019861	CMSS1	79	62.871	ENSONIG00000006678	cmss1	93	58.848	Oreochromis_niloticus
ENSGAGG00000019861	CMSS1	98	69.847	ENSOANG00000007529	CMSS1	100	74.678	Ornithorhynchus_anatinus
ENSGAGG00000019861	CMSS1	92	71.730	ENSOCUG00000025366	CMSS1	86	71.730	Oryctolagus_cuniculus
ENSGAGG00000019861	CMSS1	79	62.871	ENSORLG00000020340	cmss1	71	62.871	Oryzias_latipes
ENSGAGG00000019861	CMSS1	89	52.402	ENSORLG00020012235	cmss1	98	52.174	Oryzias_latipes_hni
ENSGAGG00000019861	CMSS1	79	55.941	ENSORLG00015015551	cmss1	75	55.941	Oryzias_latipes_hsok
ENSGAGG00000019861	CMSS1	79	63.861	ENSOMEG00000012555	cmss1	94	53.791	Oryzias_melastigma
ENSGAGG00000019861	CMSS1	89	69.298	ENSOGAG00000002045	CMSS1	100	69.298	Otolemur_garnettii
ENSGAGG00000019861	CMSS1	99	64.576	ENSOARG00000017899	CMSS1	91	64.576	Ovis_aries
ENSGAGG00000019861	CMSS1	92	70.886	ENSPPAG00000038515	CMSS1	97	64.906	Pan_paniscus
ENSGAGG00000019861	CMSS1	92	71.308	ENSPPRG00000016767	CMSS1	85	71.308	Panthera_pardus
ENSGAGG00000019861	CMSS1	92	71.186	ENSPTIG00000018274	CMSS1	85	71.186	Panthera_tigris_altaica
ENSGAGG00000019861	CMSS1	91	70.940	ENSPTRG00000015157	CMSS1	96	70.940	Pan_troglodytes
ENSGAGG00000019861	CMSS1	95	67.073	ENSPANG00000019980	CMSS1	91	71.491	Papio_anubis
ENSGAGG00000019861	CMSS1	99	53.623	ENSPKIG00000012609	cmss1	99	56.618	Paramormyrops_kingsleyae
ENSGAGG00000019861	CMSS1	89	92.140	ENSPSIG00000003849	CMSS1	100	92.140	Pelodiscus_sinensis
ENSGAGG00000019861	CMSS1	79	61.084	ENSPMGG00000010286	cmss1	87	61.084	Periophthalmus_magnuspinnatus
ENSGAGG00000019861	CMSS1	99	66.160	ENSPEMG00000016384	Cmss1	92	66.160	Peromyscus_maniculatus_bairdii
ENSGAGG00000019861	CMSS1	79	54.412	ENSPMAG00000001146	cmss1	99	54.950	Petromyzon_marinus
ENSGAGG00000019861	CMSS1	100	68.797	ENSPCIG00000015656	CMSS1	100	68.797	Phascolarctos_cinereus
ENSGAGG00000019861	CMSS1	79	63.366	ENSPFOG00000016849	cmss1	98	52.669	Poecilia_formosa
ENSGAGG00000019861	CMSS1	79	62.871	ENSPLAG00000008323	cmss1	98	52.313	Poecilia_latipinna
ENSGAGG00000019861	CMSS1	79	63.366	ENSPMEG00000021020	cmss1	98	51.957	Poecilia_mexicana
ENSGAGG00000019861	CMSS1	79	62.376	ENSPREG00000007618	cmss1	84	53.755	Poecilia_reticulata
ENSGAGG00000019861	CMSS1	92	70.886	ENSPPYG00000013606	CMSS1	87	70.886	Pongo_abelii
ENSGAGG00000019861	CMSS1	98	65.000	ENSPCOG00000020035	CMSS1	91	69.620	Propithecus_coquereli
ENSGAGG00000019861	CMSS1	98	58.397	ENSPVAG00000017031	CMSS1	93	58.397	Pteropus_vampyrus
ENSGAGG00000019861	CMSS1	68	65.909	ENSPNYG00000013428	cmss1	80	60.829	Pundamilia_nyererei
ENSGAGG00000019861	CMSS1	93	54.733	ENSPNAG00000007912	cmss1	82	57.025	Pygocentrus_nattereri
ENSGAGG00000019861	CMSS1	91	71.795	ENSRNOG00000027888	Cmss1	91	72.103	Rattus_norvegicus
ENSGAGG00000019861	CMSS1	100	62.007	ENSRBIG00000037931	CMSS1	100	62.007	Rhinopithecus_bieti
ENSGAGG00000019861	CMSS1	100	62.007	ENSRROG00000042910	CMSS1	100	62.007	Rhinopithecus_roxellana
ENSGAGG00000019861	CMSS1	92	70.886	ENSSBOG00000030980	CMSS1	90	70.886	Saimiri_boliviensis_boliviensis
ENSGAGG00000019861	CMSS1	100	68.872	ENSSHAG00000009321	CMSS1	99	68.992	Sarcophilus_harrisii
ENSGAGG00000019861	CMSS1	93	58.893	ENSSFOG00015001509	cmss1	97	55.282	Scleropages_formosus
ENSGAGG00000019861	CMSS1	79	66.337	ENSSMAG00000001653	cmss1	69	66.337	Scophthalmus_maximus
ENSGAGG00000019861	CMSS1	79	64.851	ENSSDUG00000007719	cmss1	90	55.985	Seriola_dumerili
ENSGAGG00000019861	CMSS1	81	64.251	ENSSLDG00000012300	cmss1	88	52.607	Seriola_lalandi_dorsalis
ENSGAGG00000019861	CMSS1	92	59.494	ENSSARG00000003584	CMSS1	85	59.494	Sorex_araneus
ENSGAGG00000019861	CMSS1	88	82.301	ENSSPUG00000003865	CMSS1	100	82.301	Sphenodon_punctatus
ENSGAGG00000019861	CMSS1	80	66.019	ENSSPAG00000019182	cmss1	63	66.337	Stegastes_partitus
ENSGAGG00000019861	CMSS1	100	63.799	ENSSSCG00000011970	CMSS1	100	63.799	Sus_scrofa
ENSGAGG00000019861	CMSS1	89	79.039	ENSTGUG00000013635	CMSS1	100	79.039	Taeniopygia_guttata
ENSGAGG00000019861	CMSS1	100	53.333	ENSTRUG00000015265	cmss1	95	53.214	Takifugu_rubripes
ENSGAGG00000019861	CMSS1	100	51.246	ENSTNIG00000002880	cmss1	100	51.601	Tetraodon_nigroviridis
ENSGAGG00000019861	CMSS1	89	48.684	ENSTBEG00000016722	CMSS1	81	48.684	Tupaia_belangeri
ENSGAGG00000019861	CMSS1	97	62.791	ENSTTRG00000001562	CMSS1	92	62.791	Tursiops_truncatus
ENSGAGG00000019861	CMSS1	96	68.952	ENSUAMG00000024209	CMSS1	100	72.197	Ursus_americanus
ENSGAGG00000019861	CMSS1	96	68.952	ENSUMAG00000001983	CMSS1	96	68.952	Ursus_maritimus
ENSGAGG00000019861	CMSS1	89	57.018	ENSVPAG00000000263	CMSS1	57	73.750	Vicugna_pacos
ENSGAGG00000019861	CMSS1	94	69.835	ENSVVUG00000021647	-	98	69.835	Vulpes_vulpes
ENSGAGG00000019861	CMSS1	79	71.782	ENSVVUG00000007776	-	80	71.782	Vulpes_vulpes
ENSGAGG00000019861	CMSS1	94	60.581	ENSXETG00000011858	cmss1	86	60.581	Xenopus_tropicalis
ENSGAGG00000019861	CMSS1	81	62.981	ENSXCOG00000018724	cmss1	69	63.366	Xiphophorus_couchianus
ENSGAGG00000019861	CMSS1	81	62.981	ENSXMAG00000011243	cmss1	76	63.366	Xiphophorus_maculatus