EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAGG00000020974 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Gopherus_agassizii
Status: putative
Strand: Plus strand
Length: 1208 bases
Position: chrPPEB01001921.1:49124-50331
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAGP00000028961	LSM	PF01423.22	1.7e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAGT00000032897	-	539	-	ENSGAGP00000028961	119 (aa)	-	-

Gene Model

Click here to download ENSGAGG00000020974's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAGG00000020974's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAGG00000020974	-	61	41.096	ENSGAGG00000020980	LSM6	91	41.096
ENSGAGG00000020974	-	66	87.179	ENSGAGG00000012945	-	73	85.000
ENSGAGG00000020974	-	54	87.500	ENSGAGG00000014132	-	75	90.323

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAGG00000020974	-	52	96.774	ENSG00000139343	SNRPF	72	96.774	Homo_sapiens
ENSGAGG00000020974	-	54	82.812	ENSAMEG00000018718	-	72	85.484	Ailuropoda_melanoleuca
ENSGAGG00000020974	-	51	96.721	ENSAMEG00000002166	-	72	96.721	Ailuropoda_melanoleuca
ENSGAGG00000020974	-	52	90.323	ENSACIG00000013216	snrpf	71	93.333	Amphilophus_citrinellus
ENSGAGG00000020974	-	52	90.323	ENSAOCG00000015108	snrpf	71	93.333	Amphiprion_ocellaris
ENSGAGG00000020974	-	52	90.323	ENSAPEG00000022022	snrpf	71	93.333	Amphiprion_percula
ENSGAGG00000020974	-	52	90.323	ENSATEG00000022625	snrpf	65	93.333	Anabas_testudineus
ENSGAGG00000020974	-	51	95.082	ENSACAG00000014073	SNRPF	70	95.082	Anolis_carolinensis
ENSGAGG00000020974	-	52	96.774	ENSANAG00000032845	SNRPF	72	96.774	Aotus_nancymaae
ENSGAGG00000020974	-	50	86.667	ENSANAG00000020297	-	55	86.667	Aotus_nancymaae
ENSGAGG00000020974	-	54	65.625	ENSANAG00000025860	-	67	67.742	Aotus_nancymaae
ENSGAGG00000020974	-	52	90.323	ENSACLG00000016066	snrpf	71	93.333	Astatotilapia_calliptera
ENSGAGG00000020974	-	62	83.784	ENSAMXG00000007421	snrpf	87	83.784	Astyanax_mexicanus
ENSGAGG00000020974	-	52	96.774	ENSBTAG00000016271	SNRPF	72	96.774	Bos_taurus
ENSGAGG00000020974	-	52	91.935	ENSBTAG00000050012	-	77	91.935	Bos_taurus
ENSGAGG00000020974	-	52	96.774	ENSCJAG00000002705	-	72	96.774	Callithrix_jacchus
ENSGAGG00000020974	-	54	84.375	ENSCAFG00000031151	-	72	87.097	Canis_familiaris
ENSGAGG00000020974	-	55	90.909	ENSCAFG00000006395	-	57	95.238	Canis_familiaris
ENSGAGG00000020974	-	54	84.375	ENSCAFG00020010823	-	72	87.097	Canis_lupus_dingo
ENSGAGG00000020974	-	54	78.125	ENSTSYG00000030635	-	71	80.645	Carlito_syrichta
ENSGAGG00000020974	-	54	87.692	ENSTSYG00000036502	-	72	90.476	Carlito_syrichta
ENSGAGG00000020974	-	68	74.074	ENSTSYG00000031636	-	68	74.074	Carlito_syrichta
ENSGAGG00000020974	-	51	96.721	ENSCAPG00000007242	SNRPF	72	96.721	Cavia_aperea
ENSGAGG00000020974	-	52	96.774	ENSCPOG00000013898	SNRPF	72	96.774	Cavia_porcellus
ENSGAGG00000020974	-	52	96.774	ENSCCAG00000037378	-	72	96.774	Cebus_capucinus
ENSGAGG00000020974	-	53	84.127	ENSCCAG00000033627	-	50	84.127	Cebus_capucinus
ENSGAGG00000020974	-	52	96.774	ENSCCAG00000017356	-	72	96.774	Cebus_capucinus
ENSGAGG00000020974	-	52	96.774	ENSCLAG00000007200	SNRPF	72	96.774	Chinchilla_lanigera
ENSGAGG00000020974	-	54	95.312	ENSCSAG00000003602	-	52	95.312	Chlorocebus_sabaeus
ENSGAGG00000020974	-	54	93.750	ENSCHOG00000009392	SNRPF	100	93.750	Choloepus_hoffmanni
ENSGAGG00000020974	-	52	91.935	ENSCPBG00000001985	-	74	91.935	Chrysemys_picta_bellii
ENSGAGG00000020974	-	54	85.938	ENSCPBG00000006227	-	72	88.710	Chrysemys_picta_bellii
ENSGAGG00000020974	-	52	88.710	ENSCPBG00000026463	-	72	88.710	Chrysemys_picta_bellii
ENSGAGG00000020974	-	54	84.375	ENSCSAVG00000007498	-	73	84.375	Ciona_savignyi
ENSGAGG00000020974	-	52	96.774	ENSCGRG00001017100	-	72	96.774	Cricetulus_griseus_chok1gshd
ENSGAGG00000020974	-	52	87.097	ENSCGRG00000018878	-	77	87.097	Cricetulus_griseus_crigri
ENSGAGG00000020974	-	52	96.774	ENSCGRG00000000336	-	72	96.774	Cricetulus_griseus_crigri
ENSGAGG00000020974	-	54	89.062	ENSCSEG00000004748	snrpf	72	91.935	Cynoglossus_semilaevis
ENSGAGG00000020974	-	54	87.879	ENSDARG00000105037	snrpf	73	90.625	Danio_rerio
ENSGAGG00000020974	-	53	84.127	ENSDNOG00000049373	-	55	84.127	Dasypus_novemcinctus
ENSGAGG00000020974	-	54	92.188	ENSDNOG00000048989	-	56	93.651	Dasypus_novemcinctus
ENSGAGG00000020974	-	52	85.484	ENSDORG00000025351	-	86	85.484	Dipodomys_ordii
ENSGAGG00000020974	-	54	73.438	FBgn0000426	SmF	73	73.438	Drosophila_melanogaster
ENSGAGG00000020974	-	52	96.774	ENSETEG00000001558	-	72	96.774	Echinops_telfairi
ENSGAGG00000020974	-	73	65.517	ENSEBUG00000001793	-	91	65.517	Eptatretus_burgeri
ENSGAGG00000020974	-	55	90.909	ENSECAG00000019817	SNRPF	52	93.750	Equus_caballus
ENSGAGG00000020974	-	51	96.721	ENSEEUG00000013509	SNRPF	72	96.721	Erinaceus_europaeus
ENSGAGG00000020974	-	54	90.625	ENSELUG00000007737	RUXF	74	90.625	Esox_lucius
ENSGAGG00000020974	-	54	90.625	ENSELUG00000003121	RUXF	74	90.625	Esox_lucius
ENSGAGG00000020974	-	65	64.935	ENSFCAG00000031148	-	68	64.935	Felis_catus
ENSGAGG00000020974	-	52	77.419	ENSFCAG00000021942	-	76	77.419	Felis_catus
ENSGAGG00000020974	-	52	96.774	ENSFCAG00000029966	-	72	96.774	Felis_catus
ENSGAGG00000020974	-	51	96.721	ENSFALG00000010799	SNRPF	71	96.721	Ficedula_albicollis
ENSGAGG00000020974	-	52	96.774	ENSFDAG00000002831	-	72	96.774	Fukomys_damarensis
ENSGAGG00000020974	-	55	86.364	ENSFHEG00000003240	snrpf	56	89.062	Fundulus_heteroclitus
ENSGAGG00000020974	-	53	90.476	ENSGMOG00000007741	snrpf	72	93.443	Gadus_morhua
ENSGAGG00000020974	-	52	96.774	ENSGALG00000011409	SNRPF	72	96.774	Gallus_gallus
ENSGAGG00000020974	-	52	90.323	ENSGAFG00000016187	snrpf	69	93.333	Gambusia_affinis
ENSGAGG00000020974	-	53	92.063	ENSGACG00000020055	snrpf	74	92.063	Gasterosteus_aculeatus
ENSGAGG00000020974	-	52	70.968	ENSGGOG00000039936	-	67	70.968	Gorilla_gorilla
ENSGAGG00000020974	-	52	96.774	ENSGGOG00000001127	-	72	96.774	Gorilla_gorilla
ENSGAGG00000020974	-	52	67.742	ENSGGOG00000039564	-	73	67.742	Gorilla_gorilla
ENSGAGG00000020974	-	52	96.774	ENSHGLG00000009108	SNRPF	72	96.774	Heterocephalus_glaber_female
ENSGAGG00000020974	-	52	95.161	ENSHGLG00000021172	-	72	95.161	Heterocephalus_glaber_female
ENSGAGG00000020974	-	52	95.161	ENSHGLG00100019596	-	72	95.161	Heterocephalus_glaber_male
ENSGAGG00000020974	-	51	96.721	ENSHGLG00100008103	-	72	96.721	Heterocephalus_glaber_male
ENSGAGG00000020974	-	57	73.333	ENSHCOG00000018663	snrpf	59	73.333	Hippocampus_comes
ENSGAGG00000020974	-	54	90.625	ENSIPUG00000018994	snrpf	72	93.548	Ictalurus_punctatus
ENSGAGG00000020974	-	52	96.774	ENSSTOG00000010434	-	72	96.774	Ictidomys_tridecemlineatus
ENSGAGG00000020974	-	52	83.871	ENSJJAG00000010502	-	74	83.871	Jaculus_jaculus
ENSGAGG00000020974	-	52	79.032	ENSJJAG00000004558	-	74	79.032	Jaculus_jaculus
ENSGAGG00000020974	-	52	96.774	ENSJJAG00000011272	-	72	96.774	Jaculus_jaculus
ENSGAGG00000020974	-	54	89.062	ENSKMAG00000013566	snrpf	72	91.935	Kryptolebias_marmoratus
ENSGAGG00000020974	-	54	89.062	ENSLBEG00000008800	snrpf	72	91.935	Labrus_bergylta
ENSGAGG00000020974	-	55	90.909	ENSLACG00000002456	-	55	93.750	Latimeria_chalumnae
ENSGAGG00000020974	-	54	90.625	ENSLOCG00000015744	snrpf	74	90.625	Lepisosteus_oculatus
ENSGAGG00000020974	-	51	96.721	ENSLAFG00000017426	SNRPF	71	96.721	Loxodonta_africana
ENSGAGG00000020974	-	52	88.710	ENSMAMG00000016593	snrpf	71	91.667	Mastacembelus_armatus
ENSGAGG00000020974	-	52	90.323	ENSMZEG00005014701	snrpf	71	93.333	Maylandia_zebra
ENSGAGG00000020974	-	66	80.769	ENSMGAG00000011453	-	69	80.769	Meleagris_gallopavo
ENSGAGG00000020974	-	50	69.492	ENSMAUG00000010289	-	68	69.492	Mesocricetus_auratus
ENSGAGG00000020974	-	51	93.443	ENSMAUG00000008799	-	71	93.443	Mesocricetus_auratus
ENSGAGG00000020974	-	52	96.774	ENSMICG00000012153	-	72	96.774	Microcebus_murinus
ENSGAGG00000020974	-	55	86.364	ENSMICG00000030494	-	50	90.476	Microcebus_murinus
ENSGAGG00000020974	-	52	96.774	ENSMOCG00000020437	Snrpf	72	96.774	Microtus_ochrogaster
ENSGAGG00000020974	-	54	79.688	ENSMOCG00000022166	-	68	82.258	Microtus_ochrogaster
ENSGAGG00000020974	-	61	82.192	ENSMMOG00000007127	snrpf	87	82.192	Mola_mola
ENSGAGG00000020974	-	53	96.825	ENSMODG00000008091	SNRPF	55	96.825	Monodelphis_domestica
ENSGAGG00000020974	-	52	90.323	ENSMALG00000012328	snrpf	71	93.333	Monopterus_albus
ENSGAGG00000020974	-	52	96.774	MGP_CAROLIEiJ_G0015735	-	72	96.774	Mus_caroli
ENSGAGG00000020974	-	52	96.774	ENSMUSG00000020018	Snrpf	72	96.774	Mus_musculus
ENSGAGG00000020974	-	52	96.774	MGP_PahariEiJ_G0031350	Snrpf	72	96.774	Mus_pahari
ENSGAGG00000020974	-	52	96.774	MGP_SPRETEiJ_G0016553	Snrpf	72	96.774	Mus_spretus
ENSGAGG00000020974	-	66	80.769	ENSMPUG00000007176	-	68	80.769	Mustela_putorius_furo
ENSGAGG00000020974	-	64	82.895	ENSMLUG00000029201	-	72	81.250	Myotis_lucifugus
ENSGAGG00000020974	-	51	96.721	ENSMLUG00000013577	-	72	96.721	Myotis_lucifugus
ENSGAGG00000020974	-	63	69.333	ENSMLUG00000026269	-	68	69.333	Myotis_lucifugus
ENSGAGG00000020974	-	64	82.895	ENSMLUG00000026149	-	72	81.250	Myotis_lucifugus
ENSGAGG00000020974	-	70	78.313	ENSMLUG00000027932	-	73	80.247	Myotis_lucifugus
ENSGAGG00000020974	-	52	96.774	ENSNGAG00000024292	-	72	96.774	Nannospalax_galili
ENSGAGG00000020974	-	65	77.922	ENSNBRG00000011682	snrpf	76	80.000	Neolamprologus_brichardi
ENSGAGG00000020974	-	52	96.774	ENSODEG00000010328	-	72	96.774	Octodon_degus
ENSGAGG00000020974	-	51	96.721	ENSOCUG00000010925	SNRPF	54	96.721	Oryctolagus_cuniculus
ENSGAGG00000020974	-	61	83.562	ENSORLG00020008216	snrpf	87	83.562	Oryzias_latipes_hni
ENSGAGG00000020974	-	61	83.562	ENSORLG00015007418	snrpf	87	83.562	Oryzias_latipes_hsok
ENSGAGG00000020974	-	52	91.935	ENSOMEG00000003018	snrpf	73	91.935	Oryzias_melastigma
ENSGAGG00000020974	-	52	95.161	ENSOGAG00000030323	-	72	95.161	Otolemur_garnettii
ENSGAGG00000020974	-	67	77.500	ENSOARG00000011853	-	67	80.519	Ovis_aries
ENSGAGG00000020974	-	52	66.129	ENSPPAG00000037479	-	73	66.129	Pan_paniscus
ENSGAGG00000020974	-	52	70.968	ENSPPAG00000037544	-	67	70.968	Pan_paniscus
ENSGAGG00000020974	-	52	96.774	ENSPPRG00000005875	-	72	96.774	Panthera_pardus
ENSGAGG00000020974	-	55	72.308	ENSPPRG00000007449	-	66	72.308	Panthera_pardus
ENSGAGG00000020974	-	55	72.308	ENSPTIG00000005117	-	77	72.308	Panthera_tigris_altaica
ENSGAGG00000020974	-	52	96.774	ENSPTIG00000007520	SNRPF	72	96.774	Panthera_tigris_altaica
ENSGAGG00000020974	-	52	66.129	ENSPTRG00000047717	-	73	66.129	Pan_troglodytes
ENSGAGG00000020974	-	52	70.968	ENSPTRG00000043814	-	67	70.968	Pan_troglodytes
ENSGAGG00000020974	-	53	90.476	ENSPKIG00000014784	snrpf	67	93.443	Paramormyrops_kingsleyae
ENSGAGG00000020974	-	51	96.721	ENSPSIG00000016462	SNRPF	71	96.721	Pelodiscus_sinensis
ENSGAGG00000020974	-	61	82.192	ENSPMGG00000023548	snrpf	87	82.192	Periophthalmus_magnuspinnatus
ENSGAGG00000020974	-	52	96.774	ENSPEMG00000023326	Snrpf	72	96.774	Peromyscus_maniculatus_bairdii
ENSGAGG00000020974	-	52	90.323	ENSPLAG00000023932	snrpf	71	93.333	Poecilia_latipinna
ENSGAGG00000020974	-	52	90.323	ENSPMEG00000003377	snrpf	71	93.333	Poecilia_mexicana
ENSGAGG00000020974	-	52	90.323	ENSPREG00000022635	snrpf	69	93.333	Poecilia_reticulata
ENSGAGG00000020974	-	52	96.774	ENSPPYG00000004847	-	72	96.774	Pongo_abelii
ENSGAGG00000020974	-	52	96.774	ENSPCOG00000023833	-	72	96.774	Propithecus_coquereli
ENSGAGG00000020974	-	52	96.774	ENSPVAG00000009036	SNRPF	72	96.774	Pteropus_vampyrus
ENSGAGG00000020974	-	52	90.323	ENSPNYG00000021712	snrpf	71	93.333	Pundamilia_nyererei
ENSGAGG00000020974	-	52	91.935	ENSPNAG00000019117	snrpf	73	91.935	Pygocentrus_nattereri
ENSGAGG00000020974	-	52	96.774	ENSRNOG00000005556	Snrpf	72	96.774	Rattus_norvegicus
ENSGAGG00000020974	-	54	90.625	ENSRBIG00000030414	-	72	93.548	Rhinopithecus_bieti
ENSGAGG00000020974	-	54	90.625	ENSRROG00000021975	-	72	93.548	Rhinopithecus_roxellana
ENSGAGG00000020974	-	53	51.562	YPR182W	SMX3	74	51.562	Saccharomyces_cerevisiae
ENSGAGG00000020974	-	54	74.627	ENSSBOG00000027638	-	73	76.923	Saimiri_boliviensis_boliviensis
ENSGAGG00000020974	-	52	96.774	ENSSBOG00000036179	-	72	96.774	Saimiri_boliviensis_boliviensis
ENSGAGG00000020974	-	54	78.125	ENSSBOG00000032297	-	69	80.645	Saimiri_boliviensis_boliviensis
ENSGAGG00000020974	-	52	96.774	ENSSBOG00000012868	-	72	96.774	Saimiri_boliviensis_boliviensis
ENSGAGG00000020974	-	53	95.238	ENSSHAG00000012294	SNRPF	57	95.238	Sarcophilus_harrisii
ENSGAGG00000020974	-	53	90.476	ENSSFOG00015021523	snrpf	94	90.476	Scleropages_formosus
ENSGAGG00000020974	-	54	90.625	ENSSMAG00000005533	snrpf	74	90.625	Scophthalmus_maximus
ENSGAGG00000020974	-	54	90.625	ENSSDUG00000016283	snrpf	76	90.625	Seriola_dumerili
ENSGAGG00000020974	-	54	89.062	ENSSLDG00000005119	snrpf	72	91.935	Seriola_lalandi_dorsalis
ENSGAGG00000020974	-	51	72.131	ENSSLDG00000003885	-	74	72.131	Seriola_lalandi_dorsalis
ENSGAGG00000020974	-	50	96.667	ENSSPUG00000014590	-	71	96.667	Sphenodon_punctatus
ENSGAGG00000020974	-	53	90.476	ENSSPAG00000003283	snrpf	69	93.443	Stegastes_partitus
ENSGAGG00000020974	-	52	96.774	ENSSSCG00000000895	SNRPF	72	96.774	Sus_scrofa
ENSGAGG00000020974	-	54	89.062	ENSTNIG00000012672	snrpf	72	91.935	Tetraodon_nigroviridis
ENSGAGG00000020974	-	52	96.774	ENSUAMG00000008176	-	82	93.750	Ursus_americanus
ENSGAGG00000020974	-	52	85.484	ENSUAMG00000001101	-	73	85.484	Ursus_americanus
ENSGAGG00000020974	-	52	96.774	ENSUMAG00000003528	-	76	96.774	Ursus_maritimus
ENSGAGG00000020974	-	54	82.812	ENSUMAG00000006177	-	73	85.484	Ursus_maritimus
ENSGAGG00000020974	-	52	96.774	ENSVPAG00000008712	-	72	96.774	Vicugna_pacos
ENSGAGG00000020974	-	52	88.710	ENSVVUG00000023821	-	79	88.710	Vulpes_vulpes
ENSGAGG00000020974	-	52	90.323	ENSXCOG00000013860	snrpf	69	93.333	Xiphophorus_couchianus
ENSGAGG00000020974	-	52	90.323	ENSXMAG00000015448	snrpf	71	93.333	Xiphophorus_maculatus