EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAGG00000021835 (Gene tree)
Gene ID: -
Gene Symbol: CPSF4
Alias: CPSF30|NAR
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Gopherus_agassizii
Status: putative
Strand: Plus strand
Length: 10140 bases
Position: chrPPEB01002249.1:248592-258731
Accession: 2327
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAGP00000030298	zf-CCCH	PF00642.24	4.2e-20	1	2
ENSGAGP00000030298	zf-CCCH	PF00642.24	4.2e-20	2	2
ENSGAGP00000030298	zf-CCHC	PF00098.23	5e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAGT00000034386	CPSF4-201	1465	-	ENSGAGP00000030298	269 (aa)	-	UPI000CEFEC98

Gene Model

Click here to download ENSGAGG00000021835's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAGG00000021835's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAGG00000021835	CPSF4	68	78.022	ENSGAGG00000020579	-	92	82.424

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAGG00000021835	CPSF4	100	95.911	ENSG00000160917	CPSF4	100	99.107	Homo_sapiens
ENSGAGG00000021835	CPSF4	67	73.626	ENSAPOG00000004921	cpsf4	100	73.626	Acanthochromis_polyacanthus
ENSGAGG00000021835	CPSF4	100	95.539	ENSAMEG00000006252	CPSF4	100	95.539	Ailuropoda_melanoleuca
ENSGAGG00000021835	CPSF4	100	79.630	ENSACIG00000009248	cpsf4	100	77.407	Amphilophus_citrinellus
ENSGAGG00000021835	CPSF4	100	85.185	ENSAOCG00000019616	cpsf4	100	85.185	Amphiprion_ocellaris
ENSGAGG00000021835	CPSF4	100	85.185	ENSAPEG00000011679	cpsf4	100	85.185	Amphiprion_percula
ENSGAGG00000021835	CPSF4	100	83.824	ENSATEG00000007010	cpsf4	100	83.824	Anabas_testudineus
ENSGAGG00000021835	CPSF4	100	95.911	ENSACAG00000012941	CPSF4	89	95.911	Anolis_carolinensis
ENSGAGG00000021835	CPSF4	100	95.911	ENSANAG00000021360	CPSF4	100	95.911	Aotus_nancymaae
ENSGAGG00000021835	CPSF4	100	84.074	ENSACLG00000010374	cpsf4	100	84.074	Astatotilapia_calliptera
ENSGAGG00000021835	CPSF4	100	84.502	ENSAMXG00000031647	cpsf4	100	82.657	Astyanax_mexicanus
ENSGAGG00000021835	CPSF4	100	83.643	ENSBTAG00000002090	CPSF4	100	84.387	Bos_taurus
ENSGAGG00000021835	CPSF4	100	95.911	ENSCJAG00000015826	CPSF4	100	95.911	Callithrix_jacchus
ENSGAGG00000021835	CPSF4	100	95.539	ENSCAFG00000015036	CPSF4	100	95.539	Canis_familiaris
ENSGAGG00000021835	CPSF4	100	89.591	ENSCAFG00020014462	CPSF4	100	89.591	Canis_lupus_dingo
ENSGAGG00000021835	CPSF4	100	95.539	ENSCHIG00000014313	CPSF4	100	95.539	Capra_hircus
ENSGAGG00000021835	CPSF4	100	79.259	ENSTSYG00000014604	-	100	77.407	Carlito_syrichta
ENSGAGG00000021835	CPSF4	100	85.130	ENSTSYG00000005712	-	100	85.502	Carlito_syrichta
ENSGAGG00000021835	CPSF4	89	79.253	ENSTSYG00000008195	-	99	77.200	Carlito_syrichta
ENSGAGG00000021835	CPSF4	81	95.413	ENSCAPG00000013881	CPSF4	87	95.413	Cavia_aperea
ENSGAGG00000021835	CPSF4	100	84.387	ENSCPOG00000001783	CPSF4	100	84.758	Cavia_porcellus
ENSGAGG00000021835	CPSF4	100	95.911	ENSCCAG00000028291	CPSF4	100	95.911	Cebus_capucinus
ENSGAGG00000021835	CPSF4	100	95.911	ENSCATG00000038440	CPSF4	100	95.911	Cercocebus_atys
ENSGAGG00000021835	CPSF4	100	95.539	ENSCLAG00000007050	CPSF4	100	95.539	Chinchilla_lanigera
ENSGAGG00000021835	CPSF4	100	95.911	ENSCSAG00000017795	CPSF4	100	95.911	Chlorocebus_sabaeus
ENSGAGG00000021835	CPSF4	80	100.000	ENSCPBG00000020869	CPSF4	100	100.000	Chrysemys_picta_bellii
ENSGAGG00000021835	CPSF4	61	82.424	ENSCPBG00000010269	-	100	81.928	Chrysemys_picta_bellii
ENSGAGG00000021835	CPSF4	97	56.322	ENSCING00000021080	-	97	56.322	Ciona_intestinalis
ENSGAGG00000021835	CPSF4	96	54.417	ENSCSAVG00000011469	-	97	53.737	Ciona_savignyi
ENSGAGG00000021835	CPSF4	100	95.911	ENSCANG00000019384	CPSF4	100	95.911	Colobus_angolensis_palliatus
ENSGAGG00000021835	CPSF4	100	84.387	ENSCGRG00001024184	Cpsf4	100	84.758	Cricetulus_griseus_chok1gshd
ENSGAGG00000021835	CPSF4	100	95.539	ENSCGRG00000013892	Cpsf4	100	95.539	Cricetulus_griseus_crigri
ENSGAGG00000021835	CPSF4	100	84.074	ENSCSEG00000019055	cpsf4	100	82.222	Cynoglossus_semilaevis
ENSGAGG00000021835	CPSF4	100	83.704	ENSCVAG00000016528	cpsf4	100	83.704	Cyprinodon_variegatus
ENSGAGG00000021835	CPSF4	100	86.347	ENSDARG00000020217	cpsf4	100	86.347	Danio_rerio
ENSGAGG00000021835	CPSF4	100	95.911	ENSDNOG00000006344	CPSF4	100	95.911	Dasypus_novemcinctus
ENSGAGG00000021835	CPSF4	81	95.392	ENSDORG00000000742	Cpsf4	100	95.392	Dipodomys_ordii
ENSGAGG00000021835	CPSF4	100	55.137	FBgn0015621	Clp	99	54.795	Drosophila_melanogaster
ENSGAGG00000021835	CPSF4	70	100.000	ENSETEG00000002608	CPSF4	70	100.000	Echinops_telfairi
ENSGAGG00000021835	CPSF4	99	65.918	ENSEBUG00000012552	cpsf4	98	65.918	Eptatretus_burgeri
ENSGAGG00000021835	CPSF4	100	84.387	ENSEASG00005002487	CPSF4	100	84.758	Equus_asinus_asinus
ENSGAGG00000021835	CPSF4	100	95.539	ENSECAG00000007525	CPSF4	100	95.539	Equus_caballus
ENSGAGG00000021835	CPSF4	63	98.507	ENSEEUG00000002158	CPSF4	73	98.507	Erinaceus_europaeus
ENSGAGG00000021835	CPSF4	100	83.577	ENSELUG00000011481	cpsf4	100	82.117	Esox_lucius
ENSGAGG00000021835	CPSF4	100	95.539	ENSFCAG00000015070	CPSF4	100	95.539	Felis_catus
ENSGAGG00000021835	CPSF4	61	57.558	ENSFALG00000012906	-	100	57.558	Ficedula_albicollis
ENSGAGG00000021835	CPSF4	100	88.104	ENSFALG00000013799	CPSF4	100	88.104	Ficedula_albicollis
ENSGAGG00000021835	CPSF4	90	94.650	ENSFDAG00000014092	CPSF4	100	94.650	Fukomys_damarensis
ENSGAGG00000021835	CPSF4	100	82.593	ENSFHEG00000010880	cpsf4	100	82.593	Fundulus_heteroclitus
ENSGAGG00000021835	CPSF4	100	78.967	ENSGMOG00000002330	cpsf4	100	77.007	Gadus_morhua
ENSGAGG00000021835	CPSF4	100	87.732	ENSGALG00000004714	CPSF4	100	87.732	Gallus_gallus
ENSGAGG00000021835	CPSF4	99	38.542	ENSGALG00000004441	-	92	37.368	Gallus_gallus
ENSGAGG00000021835	CPSF4	100	82.963	ENSGAFG00000010580	cpsf4	100	82.963	Gambusia_affinis
ENSGAGG00000021835	CPSF4	100	77.941	ENSGACG00000007792	cpsf4	100	76.015	Gasterosteus_aculeatus
ENSGAGG00000021835	CPSF4	100	95.911	ENSGGOG00000015131	CPSF4	100	95.911	Gorilla_gorilla
ENSGAGG00000021835	CPSF4	100	84.074	ENSHBUG00000013699	cpsf4	100	84.074	Haplochromis_burtoni
ENSGAGG00000021835	CPSF4	100	94.465	ENSHGLG00000017150	CPSF4	100	94.465	Heterocephalus_glaber_female
ENSGAGG00000021835	CPSF4	66	68.362	ENSHGLG00100017302	-	100	52.788	Heterocephalus_glaber_male
ENSGAGG00000021835	CPSF4	87	92.373	ENSHGLG00100009215	-	100	92.373	Heterocephalus_glaber_male
ENSGAGG00000021835	CPSF4	100	80.741	ENSHCOG00000004397	cpsf4	100	80.741	Hippocampus_comes
ENSGAGG00000021835	CPSF4	100	84.502	ENSIPUG00000017147	cpsf4	100	84.502	Ictalurus_punctatus
ENSGAGG00000021835	CPSF4	100	95.539	ENSSTOG00000001688	CPSF4	100	95.539	Ictidomys_tridecemlineatus
ENSGAGG00000021835	CPSF4	100	95.539	ENSJJAG00000019426	Cpsf4	100	95.539	Jaculus_jaculus
ENSGAGG00000021835	CPSF4	100	82.288	ENSKMAG00000015642	cpsf4	100	82.288	Kryptolebias_marmoratus
ENSGAGG00000021835	CPSF4	100	60.370	ENSLACG00000018470	-	100	60.370	Latimeria_chalumnae
ENSGAGG00000021835	CPSF4	100	88.519	ENSLACG00000010938	CPSF4	100	88.519	Latimeria_chalumnae
ENSGAGG00000021835	CPSF4	100	89.963	ENSLOCG00000004814	cpsf4	100	89.963	Lepisosteus_oculatus
ENSGAGG00000021835	CPSF4	100	95.167	ENSLAFG00000000159	CPSF4	100	95.167	Loxodonta_africana
ENSGAGG00000021835	CPSF4	100	95.911	ENSMFAG00000001462	CPSF4	100	95.911	Macaca_fascicularis
ENSGAGG00000021835	CPSF4	100	95.911	ENSMMUG00000019191	CPSF4	100	95.911	Macaca_mulatta
ENSGAGG00000021835	CPSF4	100	95.911	ENSMNEG00000032306	CPSF4	100	95.911	Macaca_nemestrina
ENSGAGG00000021835	CPSF4	100	95.911	ENSMLEG00000034721	CPSF4	100	95.911	Mandrillus_leucophaeus
ENSGAGG00000021835	CPSF4	100	83.704	ENSMAMG00000006244	cpsf4	100	82.418	Mastacembelus_armatus
ENSGAGG00000021835	CPSF4	100	84.074	ENSMZEG00005007515	cpsf4	100	84.074	Maylandia_zebra
ENSGAGG00000021835	CPSF4	87	85.957	ENSMGAG00000004235	CPSF4	100	85.957	Meleagris_gallopavo
ENSGAGG00000021835	CPSF4	100	95.539	ENSMAUG00000021253	Cpsf4	100	95.539	Mesocricetus_auratus
ENSGAGG00000021835	CPSF4	100	95.539	ENSMICG00000017429	CPSF4	100	95.539	Microcebus_murinus
ENSGAGG00000021835	CPSF4	100	95.539	ENSMOCG00000014901	Cpsf4	100	95.539	Microtus_ochrogaster
ENSGAGG00000021835	CPSF4	100	83.704	ENSMMOG00000001813	cpsf4	100	83.704	Mola_mola
ENSGAGG00000021835	CPSF4	100	98.141	ENSMODG00000001367	CPSF4	100	98.141	Monodelphis_domestica
ENSGAGG00000021835	CPSF4	100	82.963	ENSMALG00000012611	cpsf4	100	80.741	Monopterus_albus
ENSGAGG00000021835	CPSF4	100	95.539	MGP_CAROLIEiJ_G0028012	Cpsf4	100	95.539	Mus_caroli
ENSGAGG00000021835	CPSF4	100	95.539	ENSMUSG00000029625	Cpsf4	100	95.539	Mus_musculus
ENSGAGG00000021835	CPSF4	100	95.539	MGP_PahariEiJ_G0024581	Cpsf4	100	95.539	Mus_pahari
ENSGAGG00000021835	CPSF4	100	95.539	MGP_SPRETEiJ_G0029013	Cpsf4	100	95.539	Mus_spretus
ENSGAGG00000021835	CPSF4	100	95.539	ENSMPUG00000016508	CPSF4	100	95.539	Mustela_putorius_furo
ENSGAGG00000021835	CPSF4	87	81.277	ENSMLUG00000010980	CPSF4	100	82.128	Myotis_lucifugus
ENSGAGG00000021835	CPSF4	100	95.539	ENSNGAG00000001567	Cpsf4	100	95.539	Nannospalax_galili
ENSGAGG00000021835	CPSF4	91	83.333	ENSNBRG00000003943	cpsf4	98	83.333	Neolamprologus_brichardi
ENSGAGG00000021835	CPSF4	100	92.937	ENSNLEG00000011074	CPSF4	100	92.937	Nomascus_leucogenys
ENSGAGG00000021835	CPSF4	100	98.141	ENSMEUG00000006955	CPSF4	100	98.141	Notamacropus_eugenii
ENSGAGG00000021835	CPSF4	100	95.167	ENSOPRG00000013663	CPSF4	100	95.167	Ochotona_princeps
ENSGAGG00000021835	CPSF4	100	72.161	ENSODEG00000009779	-	100	72.161	Octodon_degus
ENSGAGG00000021835	CPSF4	100	95.539	ENSODEG00000011181	-	100	95.539	Octodon_degus
ENSGAGG00000021835	CPSF4	99	73.585	ENSODEG00000018283	-	91	72.075	Octodon_degus
ENSGAGG00000021835	CPSF4	100	84.074	ENSONIG00000008495	cpsf4	100	84.074	Oreochromis_niloticus
ENSGAGG00000021835	CPSF4	100	53.957	ENSOANG00000009568	-	100	52.518	Ornithorhynchus_anatinus
ENSGAGG00000021835	CPSF4	87	95.745	ENSOANG00000007729	CPSF4	100	95.745	Ornithorhynchus_anatinus
ENSGAGG00000021835	CPSF4	100	95.911	ENSOCUG00000002437	CPSF4	70	95.911	Oryctolagus_cuniculus
ENSGAGG00000021835	CPSF4	100	82.900	ENSORLG00000022798	cpsf4	100	82.900	Oryzias_latipes
ENSGAGG00000021835	CPSF4	100	82.900	ENSORLG00020008548	cpsf4	100	82.900	Oryzias_latipes_hni
ENSGAGG00000021835	CPSF4	100	82.528	ENSORLG00015019575	cpsf4	100	82.528	Oryzias_latipes_hsok
ENSGAGG00000021835	CPSF4	100	82.156	ENSOMEG00000005176	cpsf4	100	82.156	Oryzias_melastigma
ENSGAGG00000021835	CPSF4	100	95.539	ENSOGAG00000010884	CPSF4	100	95.539	Otolemur_garnettii
ENSGAGG00000021835	CPSF4	100	85.348	ENSOARG00000018668	CPSF4	100	84.982	Ovis_aries
ENSGAGG00000021835	CPSF4	100	96.283	ENSPPAG00000043355	CPSF4	100	96.283	Pan_paniscus
ENSGAGG00000021835	CPSF4	100	95.539	ENSPPRG00000003134	CPSF4	100	95.539	Panthera_pardus
ENSGAGG00000021835	CPSF4	90	95.455	ENSPTIG00000005604	CPSF4	90	95.455	Panthera_tigris_altaica
ENSGAGG00000021835	CPSF4	100	96.283	ENSPTRG00000019453	CPSF4	100	96.283	Pan_troglodytes
ENSGAGG00000021835	CPSF4	100	95.911	ENSPANG00000023123	CPSF4	100	95.911	Papio_anubis
ENSGAGG00000021835	CPSF4	100	84.672	ENSPKIG00000014278	cpsf4	100	84.672	Paramormyrops_kingsleyae
ENSGAGG00000021835	CPSF4	81	58.904	ENSPSIG00000018198	-	100	57.339	Pelodiscus_sinensis
ENSGAGG00000021835	CPSF4	80	99.537	ENSPSIG00000011229	CPSF4	100	99.537	Pelodiscus_sinensis
ENSGAGG00000021835	CPSF4	100	73.606	ENSPMGG00000017735	cpsf4	100	71.375	Periophthalmus_magnuspinnatus
ENSGAGG00000021835	CPSF4	100	95.539	ENSPEMG00000004508	Cpsf4	100	95.539	Peromyscus_maniculatus_bairdii
ENSGAGG00000021835	CPSF4	100	98.141	ENSPCIG00000024776	CPSF4	100	98.141	Phascolarctos_cinereus
ENSGAGG00000021835	CPSF4	100	82.963	ENSPFOG00000014912	cpsf4	100	82.963	Poecilia_formosa
ENSGAGG00000021835	CPSF4	100	75.836	ENSPLAG00000009599	cpsf4	100	75.836	Poecilia_latipinna
ENSGAGG00000021835	CPSF4	100	82.963	ENSPMEG00000009790	cpsf4	100	82.963	Poecilia_mexicana
ENSGAGG00000021835	CPSF4	100	82.222	ENSPREG00000018166	cpsf4	100	79.182	Poecilia_reticulata
ENSGAGG00000021835	CPSF4	87	95.726	ENSPPYG00000017378	CPSF4	100	95.726	Pongo_abelii
ENSGAGG00000021835	CPSF4	100	94.424	ENSPCAG00000001892	CPSF4	100	94.424	Procavia_capensis
ENSGAGG00000021835	CPSF4	100	95.539	ENSPCOG00000012771	CPSF4	100	95.539	Propithecus_coquereli
ENSGAGG00000021835	CPSF4	100	89.219	ENSPVAG00000007531	CPSF4	100	89.219	Pteropus_vampyrus
ENSGAGG00000021835	CPSF4	100	84.074	ENSPNYG00000018559	cpsf4	100	84.074	Pundamilia_nyererei
ENSGAGG00000021835	CPSF4	100	87.037	ENSPNAG00000003736	cpsf4	100	87.037	Pygocentrus_nattereri
ENSGAGG00000021835	CPSF4	100	83.643	ENSRNOG00000000985	Cpsf4	100	84.387	Rattus_norvegicus
ENSGAGG00000021835	CPSF4	87	95.726	ENSRBIG00000033886	CPSF4	100	95.726	Rhinopithecus_bieti
ENSGAGG00000021835	CPSF4	100	84.758	ENSRROG00000040431	CPSF4	100	85.130	Rhinopithecus_roxellana
ENSGAGG00000021835	CPSF4	100	95.911	ENSSBOG00000020493	CPSF4	100	95.911	Saimiri_boliviensis_boliviensis
ENSGAGG00000021835	CPSF4	100	98.141	ENSSHAG00000011533	CPSF4	100	98.141	Sarcophilus_harrisii
ENSGAGG00000021835	CPSF4	100	86.594	ENSSFOG00015007883	cpsf4	100	87.319	Scleropages_formosus
ENSGAGG00000021835	CPSF4	100	79.554	ENSSMAG00000006374	cpsf4	100	77.695	Scophthalmus_maximus
ENSGAGG00000021835	CPSF4	100	83.704	ENSSDUG00000018887	cpsf4	100	83.704	Seriola_dumerili
ENSGAGG00000021835	CPSF4	100	83.704	ENSSLDG00000019078	cpsf4	100	84.074	Seriola_lalandi_dorsalis
ENSGAGG00000021835	CPSF4	87	95.299	ENSSARG00000012416	CPSF4	100	95.299	Sorex_araneus
ENSGAGG00000021835	CPSF4	96	58.915	ENSSPUG00000014803	-	97	58.915	Sphenodon_punctatus
ENSGAGG00000021835	CPSF4	100	95.911	ENSSPUG00000003549	CPSF4	100	95.911	Sphenodon_punctatus
ENSGAGG00000021835	CPSF4	100	79.926	ENSSPAG00000006174	cpsf4	100	77.323	Stegastes_partitus
ENSGAGG00000021835	CPSF4	100	84.387	ENSSSCG00000026896	CPSF4	100	84.758	Sus_scrofa
ENSGAGG00000021835	CPSF4	100	87.085	ENSTGUG00000007552	CPSF4	100	84.502	Taeniopygia_guttata
ENSGAGG00000021835	CPSF4	100	81.181	ENSTRUG00000024220	cpsf4	100	81.181	Takifugu_rubripes
ENSGAGG00000021835	CPSF4	100	80.443	ENSTNIG00000006265	cpsf4	100	81.919	Tetraodon_nigroviridis
ENSGAGG00000021835	CPSF4	87	85.897	ENSTBEG00000011406	CPSF4	100	85.897	Tupaia_belangeri
ENSGAGG00000021835	CPSF4	100	76.580	ENSTTRG00000003007	CPSF4	100	76.580	Tursiops_truncatus
ENSGAGG00000021835	CPSF4	92	82.186	ENSUAMG00000008051	CPSF4	85	82.996	Ursus_americanus
ENSGAGG00000021835	CPSF4	100	83.643	ENSUMAG00000009474	CPSF4	100	84.387	Ursus_maritimus
ENSGAGG00000021835	CPSF4	100	84.015	ENSVVUG00000008824	CPSF4	100	84.387	Vulpes_vulpes
ENSGAGG00000021835	CPSF4	99	60.821	ENSXETG00000004641	cpsf4l	99	60.821	Xenopus_tropicalis
ENSGAGG00000021835	CPSF4	100	89.606	ENSXETG00000009892	cpsf4	100	89.606	Xenopus_tropicalis
ENSGAGG00000021835	CPSF4	100	82.593	ENSXCOG00000016040	cpsf4	100	82.593	Xiphophorus_couchianus
ENSGAGG00000021835	CPSF4	100	82.963	ENSXMAG00000024670	cpsf4	100	82.963	Xiphophorus_maculatus