EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGAGG00000021952 (Gene tree)
Gene ID: -
Gene Symbol: PTCD2
Alias: FLJ12598
Full Name: pentatricopeptide repeat domain 2
Gene Type: protein_coding
Species: Gopherus_agassizii
Status: putative
Strand: Minus strand
Length: 31659 bases
Position: chrPPEB01004123.1:106332-137990
Accession: 25734
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAGP00000030485	PPR	PF01535.20	1e-05	1	1
ENSGAGP00000030485	MRP-S27	PF10037.9	5.7e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAGT00000034591	PTCD2-201	1723	-	ENSGAGP00000030485	390 (aa)	-	-

Gene Model

Click here to download ENSGAGG00000021952's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAGG00000021952's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAGG00000021952	PTCD2	100	57.398	ENSG00000049883	PTCD2	100	57.398	Homo_sapiens
ENSGAGG00000021952	PTCD2	90	51.412	ENSAPOG00000020682	ptcd2	92	51.412	Acanthochromis_polyacanthus
ENSGAGG00000021952	PTCD2	92	59.331	ENSAMEG00000007194	PTCD2	93	59.331	Ailuropoda_melanoleuca
ENSGAGG00000021952	PTCD2	88	46.418	ENSACIG00000002053	ptcd2	100	46.418	Amphilophus_citrinellus
ENSGAGG00000021952	PTCD2	89	51.297	ENSAOCG00000006616	ptcd2	89	51.297	Amphiprion_ocellaris
ENSGAGG00000021952	PTCD2	89	51.585	ENSAPEG00000022926	ptcd2	89	51.585	Amphiprion_percula
ENSGAGG00000021952	PTCD2	100	70.332	ENSACAG00000009747	PTCD2	100	70.332	Anolis_carolinensis
ENSGAGG00000021952	PTCD2	100	58.718	ENSANAG00000029353	PTCD2	100	58.718	Aotus_nancymaae
ENSGAGG00000021952	PTCD2	89	49.568	ENSACLG00000027742	ptcd2	89	49.568	Astatotilapia_calliptera
ENSGAGG00000021952	PTCD2	88	45.029	ENSAMXG00000029404	ptcd2	91	45.029	Astyanax_mexicanus
ENSGAGG00000021952	PTCD2	95	57.682	ENSBTAG00000014675	PTCD2	96	57.682	Bos_taurus
ENSGAGG00000021952	PTCD2	100	57.949	ENSCJAG00000016364	PTCD2	100	57.949	Callithrix_jacchus
ENSGAGG00000021952	PTCD2	99	57.949	ENSCAFG00000007982	PTCD2	91	57.949	Canis_familiaris
ENSGAGG00000021952	PTCD2	89	60.694	ENSCAFG00020019147	PTCD2	97	60.694	Canis_lupus_dingo
ENSGAGG00000021952	PTCD2	91	59.773	ENSCHIG00000017118	PTCD2	92	59.773	Capra_hircus
ENSGAGG00000021952	PTCD2	98	54.830	ENSCPOG00000040168	PTCD2	100	54.830	Cavia_porcellus
ENSGAGG00000021952	PTCD2	81	57.143	ENSCCAG00000021996	-	91	59.259	Cebus_capucinus
ENSGAGG00000021952	PTCD2	100	57.949	ENSCCAG00000029389	-	100	57.949	Cebus_capucinus
ENSGAGG00000021952	PTCD2	98	57.963	ENSCATG00000019069	PTCD2	99	57.963	Cercocebus_atys
ENSGAGG00000021952	PTCD2	92	57.382	ENSCLAG00000000072	PTCD2	94	57.382	Chinchilla_lanigera
ENSGAGG00000021952	PTCD2	90	61.429	ENSCSAG00000015623	PTCD2	99	58.115	Chlorocebus_sabaeus
ENSGAGG00000021952	PTCD2	71	64.118	ENSCHOG00000010634	PTCD2	79	64.118	Choloepus_hoffmanni
ENSGAGG00000021952	PTCD2	100	84.872	ENSCPBG00000000216	PTCD2	100	84.872	Chrysemys_picta_bellii
ENSGAGG00000021952	PTCD2	98	57.963	ENSCANG00000035636	PTCD2	98	57.963	Colobus_angolensis_palliatus
ENSGAGG00000021952	PTCD2	91	60.734	ENSCGRG00001015289	Ptcd2	78	60.734	Cricetulus_griseus_chok1gshd
ENSGAGG00000021952	PTCD2	91	60.734	ENSCGRG00000006193	Ptcd2	78	60.734	Cricetulus_griseus_crigri
ENSGAGG00000021952	PTCD2	89	51.585	ENSCVAG00000001285	ptcd2	89	51.585	Cyprinodon_variegatus
ENSGAGG00000021952	PTCD2	91	52.260	ENSDARG00000035391	ptcd2	92	52.260	Danio_rerio
ENSGAGG00000021952	PTCD2	98	57.592	ENSDNOG00000008719	PTCD2	99	57.592	Dasypus_novemcinctus
ENSGAGG00000021952	PTCD2	90	61.143	ENSDORG00000004921	Ptcd2	90	61.143	Dipodomys_ordii
ENSGAGG00000021952	PTCD2	99	52.835	ENSETEG00000016542	PTCD2	99	52.835	Echinops_telfairi
ENSGAGG00000021952	PTCD2	98	57.143	ENSEASG00005018038	PTCD2	100	57.143	Equus_asinus_asinus
ENSGAGG00000021952	PTCD2	100	57.143	ENSECAG00000007022	PTCD2	100	57.143	Equus_caballus
ENSGAGG00000021952	PTCD2	98	54.103	ENSEEUG00000014031	PTCD2	99	54.103	Erinaceus_europaeus
ENSGAGG00000021952	PTCD2	98	49.219	ENSELUG00000003584	ptcd2	100	49.219	Esox_lucius
ENSGAGG00000021952	PTCD2	99	54.359	ENSFCAG00000045432	PTCD2	84	54.359	Felis_catus
ENSGAGG00000021952	PTCD2	84	64.220	ENSFALG00000010299	PTCD2	99	64.220	Ficedula_albicollis
ENSGAGG00000021952	PTCD2	92	57.939	ENSFDAG00000018461	PTCD2	94	57.939	Fukomys_damarensis
ENSGAGG00000021952	PTCD2	89	52.286	ENSGMOG00000003637	ptcd2	91	52.286	Gadus_morhua
ENSGAGG00000021952	PTCD2	91	62.640	ENSGALG00000038260	PTCD2	100	60.052	Gallus_gallus
ENSGAGG00000021952	PTCD2	100	57.398	ENSGGOG00000010695	PTCD2	100	57.398	Gorilla_gorilla
ENSGAGG00000021952	PTCD2	89	49.280	ENSHBUG00000009191	ptcd2	89	49.280	Haplochromis_burtoni
ENSGAGG00000021952	PTCD2	92	59.610	ENSHGLG00000001234	PTCD2	94	59.610	Heterocephalus_glaber_female
ENSGAGG00000021952	PTCD2	92	59.610	ENSHGLG00100015419	PTCD2	94	59.610	Heterocephalus_glaber_male
ENSGAGG00000021952	PTCD2	95	48.518	ENSHCOG00000001703	ptcd2	96	48.518	Hippocampus_comes
ENSGAGG00000021952	PTCD2	87	49.853	ENSIPUG00000006080	ptcd2	93	49.860	Ictalurus_punctatus
ENSGAGG00000021952	PTCD2	96	59.200	ENSSTOG00000006596	PTCD2	98	59.200	Ictidomys_tridecemlineatus
ENSGAGG00000021952	PTCD2	93	59.280	ENSJJAG00000024388	Ptcd2	94	59.280	Jaculus_jaculus
ENSGAGG00000021952	PTCD2	89	46.686	ENSKMAG00000009329	ptcd2	91	46.686	Kryptolebias_marmoratus
ENSGAGG00000021952	PTCD2	100	47.355	ENSLBEG00000024871	ptcd2	99	47.355	Labrus_bergylta
ENSGAGG00000021952	PTCD2	98	60.938	ENSLOCG00000011122	ptcd2	100	60.938	Lepisosteus_oculatus
ENSGAGG00000021952	PTCD2	71	64.260	ENSLAFG00000004115	PTCD2	90	64.057	Loxodonta_africana
ENSGAGG00000021952	PTCD2	99	58.140	ENSMFAG00000031516	PTCD2	99	58.140	Macaca_fascicularis
ENSGAGG00000021952	PTCD2	98	58.486	ENSMNEG00000007537	PTCD2	99	58.486	Macaca_nemestrina
ENSGAGG00000021952	PTCD2	99	58.140	ENSMLEG00000031093	PTCD2	99	58.140	Mandrillus_leucophaeus
ENSGAGG00000021952	PTCD2	95	50.802	ENSMAMG00000018529	ptcd2	97	50.802	Mastacembelus_armatus
ENSGAGG00000021952	PTCD2	89	49.568	ENSMZEG00005003625	ptcd2	89	49.568	Maylandia_zebra
ENSGAGG00000021952	PTCD2	89	63.112	ENSMGAG00000005033	PTCD2	99	63.112	Meleagris_gallopavo
ENSGAGG00000021952	PTCD2	92	47.354	ENSMAUG00000020253	Ptcd2	93	47.354	Mesocricetus_auratus
ENSGAGG00000021952	PTCD2	98	56.806	ENSMICG00000004535	PTCD2	98	56.806	Microcebus_murinus
ENSGAGG00000021952	PTCD2	91	59.322	ENSMOCG00000019985	Ptcd2	93	59.322	Microtus_ochrogaster
ENSGAGG00000021952	PTCD2	96	57.181	ENSMODG00000001695	PTCD2	98	57.181	Monodelphis_domestica
ENSGAGG00000021952	PTCD2	89	51.297	ENSMALG00000022372	ptcd2	91	51.297	Monopterus_albus
ENSGAGG00000021952	PTCD2	96	55.764	MGP_CAROLIEiJ_G0018829	Ptcd2	97	55.764	Mus_caroli
ENSGAGG00000021952	PTCD2	96	55.228	ENSMUSG00000021650	Ptcd2	97	55.228	Mus_musculus
ENSGAGG00000021952	PTCD2	91	59.322	MGP_PahariEiJ_G0015904	Ptcd2	93	59.322	Mus_pahari
ENSGAGG00000021952	PTCD2	96	56.300	MGP_SPRETEiJ_G0019711	Ptcd2	97	56.300	Mus_spretus
ENSGAGG00000021952	PTCD2	91	61.190	ENSMPUG00000014401	PTCD2	92	61.190	Mustela_putorius_furo
ENSGAGG00000021952	PTCD2	90	58.571	ENSMLUG00000007374	PTCD2	93	57.500	Myotis_lucifugus
ENSGAGG00000021952	PTCD2	91	57.790	ENSNGAG00000005027	Ptcd2	92	57.790	Nannospalax_galili
ENSGAGG00000021952	PTCD2	85	48.485	ENSNBRG00000000092	-	100	48.485	Neolamprologus_brichardi
ENSGAGG00000021952	PTCD2	89	49.856	ENSNBRG00000008174	ptcd2	91	49.856	Neolamprologus_brichardi
ENSGAGG00000021952	PTCD2	100	57.908	ENSNLEG00000004516	PTCD2	100	57.908	Nomascus_leucogenys
ENSGAGG00000021952	PTCD2	80	51.757	ENSMEUG00000014012	-	82	51.757	Notamacropus_eugenii
ENSGAGG00000021952	PTCD2	99	55.754	ENSOPRG00000007290	PTCD2	100	55.754	Ochotona_princeps
ENSGAGG00000021952	PTCD2	91	59.887	ENSODEG00000016417	PTCD2	92	59.887	Octodon_degus
ENSGAGG00000021952	PTCD2	71	52.878	ENSONIG00000011269	ptcd2	82	52.878	Oreochromis_niloticus
ENSGAGG00000021952	PTCD2	91	59.490	ENSOCUG00000007970	PTCD2	92	59.490	Oryctolagus_cuniculus
ENSGAGG00000021952	PTCD2	89	49.422	ENSORLG00000003851	ptcd2	88	49.422	Oryzias_latipes
ENSGAGG00000021952	PTCD2	89	48.555	ENSORLG00020009823	ptcd2	90	48.555	Oryzias_latipes_hni
ENSGAGG00000021952	PTCD2	90	48.571	ENSORLG00015016777	ptcd2	99	48.571	Oryzias_latipes_hsok
ENSGAGG00000021952	PTCD2	100	47.328	ENSOMEG00000012396	ptcd2	95	47.328	Oryzias_melastigma
ENSGAGG00000021952	PTCD2	99	56.477	ENSOGAG00000008390	PTCD2	99	56.477	Otolemur_garnettii
ENSGAGG00000021952	PTCD2	91	59.773	ENSOARG00000005087	PTCD2	91	59.773	Ovis_aries
ENSGAGG00000021952	PTCD2	100	57.398	ENSPPAG00000028480	PTCD2	100	57.398	Pan_paniscus
ENSGAGG00000021952	PTCD2	100	57.143	ENSPTRG00000016968	PTCD2	100	57.143	Pan_troglodytes
ENSGAGG00000021952	PTCD2	88	61.159	ENSPANG00000006611	PTCD2	89	61.159	Papio_anubis
ENSGAGG00000021952	PTCD2	98	50.000	ENSPKIG00000019896	ptcd2	100	50.000	Paramormyrops_kingsleyae
ENSGAGG00000021952	PTCD2	82	88.125	ENSPSIG00000014559	PTCD2	99	88.125	Pelodiscus_sinensis
ENSGAGG00000021952	PTCD2	94	61.035	ENSPEMG00000000884	Ptcd2	95	61.035	Peromyscus_maniculatus_bairdii
ENSGAGG00000021952	PTCD2	98	57.702	ENSPCIG00000029047	PTCD2	99	57.702	Phascolarctos_cinereus
ENSGAGG00000021952	PTCD2	89	49.568	ENSPLAG00000010456	ptcd2	90	49.857	Poecilia_latipinna
ENSGAGG00000021952	PTCD2	89	49.856	ENSPREG00000021797	ptcd2	88	49.856	Poecilia_reticulata
ENSGAGG00000021952	PTCD2	99	50.388	ENSPPYG00000015543	PTCD2	99	50.388	Pongo_abelii
ENSGAGG00000021952	PTCD2	80	50.949	ENSPCAG00000006806	PTCD2	99	50.949	Procavia_capensis
ENSGAGG00000021952	PTCD2	99	54.082	ENSPVAG00000010935	PTCD2	99	54.082	Pteropus_vampyrus
ENSGAGG00000021952	PTCD2	89	49.280	ENSPNYG00000003122	ptcd2	89	49.280	Pundamilia_nyererei
ENSGAGG00000021952	PTCD2	92	53.315	ENSPNAG00000021490	ptcd2	94	53.315	Pygocentrus_nattereri
ENSGAGG00000021952	PTCD2	94	57.724	ENSRNOG00000028403	Ptcd2	97	57.724	Rattus_norvegicus
ENSGAGG00000021952	PTCD2	99	53.747	ENSRBIG00000032929	PTCD2	99	53.747	Rhinopithecus_bieti
ENSGAGG00000021952	PTCD2	98	57.922	ENSRROG00000000080	PTCD2	100	57.922	Rhinopithecus_roxellana
ENSGAGG00000021952	PTCD2	98	56.806	ENSSBOG00000018911	PTCD2	99	56.806	Saimiri_boliviensis_boliviensis
ENSGAGG00000021952	PTCD2	98	56.136	ENSSHAG00000003833	PTCD2	99	56.136	Sarcophilus_harrisii
ENSGAGG00000021952	PTCD2	98	51.554	ENSSFOG00015015415	ptcd2	100	51.554	Scleropages_formosus
ENSGAGG00000021952	PTCD2	90	49.288	ENSSMAG00000010350	ptcd2	91	49.288	Scophthalmus_maximus
ENSGAGG00000021952	PTCD2	100	49.487	ENSSDUG00000008142	ptcd2	97	49.487	Seriola_dumerili
ENSGAGG00000021952	PTCD2	90	52.542	ENSSLDG00000015284	ptcd2	92	52.542	Seriola_lalandi_dorsalis
ENSGAGG00000021952	PTCD2	79	51.456	ENSSARG00000004983	PTCD2	98	51.456	Sorex_araneus
ENSGAGG00000021952	PTCD2	98	62.141	ENSSPUG00000000176	PTCD2	96	62.141	Sphenodon_punctatus
ENSGAGG00000021952	PTCD2	100	48.990	ENSSPAG00000008591	ptcd2	100	48.990	Stegastes_partitus
ENSGAGG00000021952	PTCD2	99	55.699	ENSSSCG00000016975	PTCD2	90	55.699	Sus_scrofa
ENSGAGG00000021952	PTCD2	88	63.768	ENSTGUG00000005705	PTCD2	99	63.768	Taeniopygia_guttata
ENSGAGG00000021952	PTCD2	92	58.011	ENSTBEG00000016559	PTCD2	93	58.011	Tupaia_belangeri
ENSGAGG00000021952	PTCD2	99	55.527	ENSTTRG00000011851	PTCD2	99	55.527	Tursiops_truncatus
ENSGAGG00000021952	PTCD2	98	55.980	ENSUAMG00000007583	PTCD2	92	55.980	Ursus_americanus
ENSGAGG00000021952	PTCD2	92	58.774	ENSUMAG00000007666	PTCD2	94	58.774	Ursus_maritimus
ENSGAGG00000021952	PTCD2	99	53.866	ENSVPAG00000009597	PTCD2	99	53.866	Vicugna_pacos
ENSGAGG00000021952	PTCD2	90	60.571	ENSVVUG00000007299	-	99	57.963	Vulpes_vulpes
ENSGAGG00000021952	PTCD2	98	57.031	ENSXETG00000031652	PTCD2	100	57.031	Xenopus_tropicalis
ENSGAGG00000021952	PTCD2	89	51.003	ENSXMAG00000005940	ptcd2	82	51.003	Xiphophorus_maculatus