EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGAGG00000021965 (Gene tree)
Gene ID: -
Gene Symbol: LSM12
Alias: FLJ30656
Full Name: LSM12 homolog
Gene Type: protein_coding
Species: Gopherus_agassizii
Status: putative
Strand: Minus strand
Length: 16863 bases
Position: chrPPEB01004125.1:23581-40443
Accession: 26407
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAGP00000030499	AD	PF09793.9	1.2e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAGT00000034607	LSM12-201	1112	-	ENSGAGP00000030499	194 (aa)	-	-

Gene Model

Click here to download ENSGAGG00000021965's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAGG00000021965's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAGG00000021965	LSM12	99	94.301	ENSG00000161654	LSM12	99	94.301	Homo_sapiens
ENSGAGG00000021965	LSM12	100	85.714	ENSAPOG00000007907	lsm12b	100	85.714	Acanthochromis_polyacanthus
ENSGAGG00000021965	LSM12	99	92.347	ENSAMEG00000018321	LSM12	99	92.347	Ailuropoda_melanoleuca
ENSGAGG00000021965	LSM12	100	83.673	ENSACIG00000008538	lsm12b	100	83.673	Amphilophus_citrinellus
ENSGAGG00000021965	LSM12	100	85.204	ENSAOCG00000021847	lsm12b	88	85.204	Amphiprion_ocellaris
ENSGAGG00000021965	LSM12	100	85.204	ENSAPEG00000002252	lsm12b	100	85.204	Amphiprion_percula
ENSGAGG00000021965	LSM12	100	83.673	ENSATEG00000005705	lsm12b	100	83.673	Anabas_testudineus
ENSGAGG00000021965	LSM12	100	94.845	ENSACAG00000004618	LSM12	100	94.845	Anolis_carolinensis
ENSGAGG00000021965	LSM12	99	94.301	ENSANAG00000029011	LSM12	99	94.301	Aotus_nancymaae
ENSGAGG00000021965	LSM12	100	84.184	ENSACLG00000026332	lsm12b	100	84.184	Astatotilapia_calliptera
ENSGAGG00000021965	LSM12	100	78.571	ENSAMXG00000036117	lsm12a	91	78.571	Astyanax_mexicanus
ENSGAGG00000021965	LSM12	100	84.184	ENSAMXG00000032952	lsm12b	100	84.184	Astyanax_mexicanus
ENSGAGG00000021965	LSM12	99	94.301	ENSBTAG00000016252	LSM12	99	94.301	Bos_taurus
ENSGAGG00000021965	LSM12	99	94.301	ENSCJAG00000048480	LSM12	99	94.301	Callithrix_jacchus
ENSGAGG00000021965	LSM12	99	94.301	ENSCAFG00000014379	LSM12	91	94.301	Canis_familiaris
ENSGAGG00000021965	LSM12	99	94.301	ENSCAFG00020012173	LSM12	99	94.301	Canis_lupus_dingo
ENSGAGG00000021965	LSM12	99	94.301	ENSCHIG00000018175	LSM12	99	94.301	Capra_hircus
ENSGAGG00000021965	LSM12	99	94.301	ENSTSYG00000036361	LSM12	99	94.301	Carlito_syrichta
ENSGAGG00000021965	LSM12	84	90.123	ENSCAPG00000009647	LSM12	89	90.123	Cavia_aperea
ENSGAGG00000021965	LSM12	99	93.264	ENSCPOG00000012860	LSM12	99	93.264	Cavia_porcellus
ENSGAGG00000021965	LSM12	99	94.301	ENSCCAG00000032905	LSM12	99	94.301	Cebus_capucinus
ENSGAGG00000021965	LSM12	99	94.301	ENSCATG00000030577	-	99	94.301	Cercocebus_atys
ENSGAGG00000021965	LSM12	99	94.301	ENSCLAG00000015759	LSM12	99	94.301	Chinchilla_lanigera
ENSGAGG00000021965	LSM12	99	93.782	ENSCSAG00000003486	LSM12	99	93.782	Chlorocebus_sabaeus
ENSGAGG00000021965	LSM12	56	91.743	ENSCHOG00000001198	LSM12	100	91.743	Choloepus_hoffmanni
ENSGAGG00000021965	LSM12	100	98.969	ENSCPBG00000027105	LSM12	100	98.969	Chrysemys_picta_bellii
ENSGAGG00000021965	LSM12	99	94.301	ENSCANG00000043328	LSM12	99	94.301	Colobus_angolensis_palliatus
ENSGAGG00000021965	LSM12	99	94.301	ENSCGRG00001002094	Lsm12	99	94.301	Cricetulus_griseus_chok1gshd
ENSGAGG00000021965	LSM12	79	94.156	ENSCGRG00000004316	Lsm12	87	94.156	Cricetulus_griseus_crigri
ENSGAGG00000021965	LSM12	100	84.184	ENSCSEG00000008434	lsm12b	100	84.184	Cynoglossus_semilaevis
ENSGAGG00000021965	LSM12	100	84.184	ENSCVAG00000008755	lsm12b	100	84.184	Cyprinodon_variegatus
ENSGAGG00000021965	LSM12	100	78.061	ENSDARG00000028848	lsm12a	100	78.061	Danio_rerio
ENSGAGG00000021965	LSM12	100	85.714	ENSDARG00000109510	lsm12b	100	85.714	Danio_rerio
ENSGAGG00000021965	LSM12	99	94.819	ENSDNOG00000002418	LSM12	90	94.819	Dasypus_novemcinctus
ENSGAGG00000021965	LSM12	99	94.301	ENSDORG00000016381	Lsm12	99	94.301	Dipodomys_ordii
ENSGAGG00000021965	LSM12	84	32.530	FBgn0030364	Lsm12	78	32.164	Drosophila_melanogaster
ENSGAGG00000021965	LSM12	78	31.515	FBgn0036057	CG14164	87	31.515	Drosophila_melanogaster
ENSGAGG00000021965	LSM12	90	82.286	ENSETEG00000011012	-	100	82.286	Echinops_telfairi
ENSGAGG00000021965	LSM12	99	93.782	ENSETEG00000008374	LSM12	99	93.782	Echinops_telfairi
ENSGAGG00000021965	LSM12	85	64.242	ENSEBUG00000016299	lsm12a	92	64.242	Eptatretus_burgeri
ENSGAGG00000021965	LSM12	99	94.301	ENSEASG00005010155	LSM12	99	94.301	Equus_asinus_asinus
ENSGAGG00000021965	LSM12	99	94.301	ENSECAG00000009071	LSM12	99	94.301	Equus_caballus
ENSGAGG00000021965	LSM12	79	94.118	ENSEEUG00000002419	-	100	94.118	Erinaceus_europaeus
ENSGAGG00000021965	LSM12	100	83.163	ENSELUG00000015538	lsm12b	100	78.571	Esox_lucius
ENSGAGG00000021965	LSM12	100	81.633	ENSELUG00000000256	-	100	81.633	Esox_lucius
ENSGAGG00000021965	LSM12	99	94.301	ENSFCAG00000037021	LSM12	99	94.301	Felis_catus
ENSGAGG00000021965	LSM12	76	93.919	ENSFDAG00000008954	LSM12	87	93.919	Fukomys_damarensis
ENSGAGG00000021965	LSM12	100	83.163	ENSFHEG00000019913	lsm12b	100	83.163	Fundulus_heteroclitus
ENSGAGG00000021965	LSM12	81	84.810	ENSGMOG00000015449	lsm12b	100	84.810	Gadus_morhua
ENSGAGG00000021965	LSM12	79	96.078	ENSGALG00000039803	LSM12	100	96.078	Gallus_gallus
ENSGAGG00000021965	LSM12	100	83.673	ENSGAFG00000011829	lsm12b	100	83.673	Gambusia_affinis
ENSGAGG00000021965	LSM12	81	85.443	ENSGACG00000003428	lsm12b	100	85.443	Gasterosteus_aculeatus
ENSGAGG00000021965	LSM12	99	94.301	ENSGGOG00000010589	-	99	94.301	Gorilla_gorilla
ENSGAGG00000021965	LSM12	85	84.431	ENSHBUG00000007667	lsm12b	74	84.431	Haplochromis_burtoni
ENSGAGG00000021965	LSM12	99	94.301	ENSHGLG00000011411	LSM12	99	94.301	Heterocephalus_glaber_female
ENSGAGG00000021965	LSM12	91	82.873	ENSHGLG00100000241	LSM12	96	82.873	Heterocephalus_glaber_male
ENSGAGG00000021965	LSM12	100	83.673	ENSHCOG00000002094	lsm12b	100	83.673	Hippocampus_comes
ENSGAGG00000021965	LSM12	100	84.694	ENSIPUG00000014800	lsm12	100	84.694	Ictalurus_punctatus
ENSGAGG00000021965	LSM12	99	74.227	ENSIPUG00000008936	lsm12a	99	74.227	Ictalurus_punctatus
ENSGAGG00000021965	LSM12	99	94.301	ENSSTOG00000007403	LSM12	99	94.301	Ictidomys_tridecemlineatus
ENSGAGG00000021965	LSM12	81	81.132	ENSJJAG00000014652	-	95	81.132	Jaculus_jaculus
ENSGAGG00000021965	LSM12	97	83.158	ENSJJAG00000011793	-	100	83.158	Jaculus_jaculus
ENSGAGG00000021965	LSM12	99	93.264	ENSJJAG00000004364	-	99	93.264	Jaculus_jaculus
ENSGAGG00000021965	LSM12	99	76.020	ENSKMAG00000007704	lsm12b	65	76.020	Kryptolebias_marmoratus
ENSGAGG00000021965	LSM12	100	85.204	ENSLBEG00000027999	lsm12b	100	85.204	Labrus_bergylta
ENSGAGG00000021965	LSM12	100	89.175	ENSLACG00000015981	LSM12	100	89.175	Latimeria_chalumnae
ENSGAGG00000021965	LSM12	100	84.694	ENSLOCG00000013079	lsm12b	99	84.694	Lepisosteus_oculatus
ENSGAGG00000021965	LSM12	99	94.301	ENSLAFG00000005202	LSM12	99	94.301	Loxodonta_africana
ENSGAGG00000021965	LSM12	99	94.301	ENSMFAG00000031376	LSM12	99	94.301	Macaca_fascicularis
ENSGAGG00000021965	LSM12	64	79.310	ENSMMUG00000042106	-	100	79.310	Macaca_mulatta
ENSGAGG00000021965	LSM12	99	94.301	ENSMMUG00000006804	LSM12	99	94.301	Macaca_mulatta
ENSGAGG00000021965	LSM12	64	79.310	ENSMMUG00000038408	-	100	79.310	Macaca_mulatta
ENSGAGG00000021965	LSM12	99	94.301	ENSMNEG00000030594	-	99	94.301	Macaca_nemestrina
ENSGAGG00000021965	LSM12	99	94.301	ENSMLEG00000039934	LSM12	99	94.301	Mandrillus_leucophaeus
ENSGAGG00000021965	LSM12	100	84.694	ENSMAMG00000004279	lsm12b	100	84.694	Mastacembelus_armatus
ENSGAGG00000021965	LSM12	100	84.184	ENSMZEG00005005754	lsm12b	100	84.184	Maylandia_zebra
ENSGAGG00000021965	LSM12	99	93.782	ENSMICG00000037219	LSM12	99	93.782	Microcebus_murinus
ENSGAGG00000021965	LSM12	99	80.311	ENSMOCG00000017015	-	85	80.311	Microtus_ochrogaster
ENSGAGG00000021965	LSM12	99	94.301	ENSMOCG00000019878	-	99	94.301	Microtus_ochrogaster
ENSGAGG00000021965	LSM12	100	84.694	ENSMMOG00000020848	lsm12b	100	84.694	Mola_mola
ENSGAGG00000021965	LSM12	99	85.417	ENSMALG00000007578	lsm12b	98	85.417	Monopterus_albus
ENSGAGG00000021965	LSM12	99	94.301	MGP_CAROLIEiJ_G0017241	Lsm12	99	94.301	Mus_caroli
ENSGAGG00000021965	LSM12	99	94.301	ENSMUSG00000020922	Lsm12	99	94.301	Mus_musculus
ENSGAGG00000021965	LSM12	99	86.667	MGP_PahariEiJ_G0018371	Lsm12	99	86.667	Mus_pahari
ENSGAGG00000021965	LSM12	99	93.782	MGP_SPRETEiJ_G0018084	Lsm12	98	96.154	Mus_spretus
ENSGAGG00000021965	LSM12	99	93.782	ENSMLUG00000006391	LSM12	99	93.782	Myotis_lucifugus
ENSGAGG00000021965	LSM12	98	62.626	ENSNGAG00000015429	-	98	62.626	Nannospalax_galili
ENSGAGG00000021965	LSM12	99	94.301	ENSNGAG00000001870	Lsm12	99	94.301	Nannospalax_galili
ENSGAGG00000021965	LSM12	100	84.184	ENSNBRG00000006266	lsm12b	100	84.184	Neolamprologus_brichardi
ENSGAGG00000021965	LSM12	99	94.301	ENSNLEG00000005580	-	99	94.301	Nomascus_leucogenys
ENSGAGG00000021965	LSM12	84	95.092	ENSMEUG00000007501	-	99	95.092	Notamacropus_eugenii
ENSGAGG00000021965	LSM12	99	94.301	ENSOPRG00000008552	LSM12	99	94.301	Ochotona_princeps
ENSGAGG00000021965	LSM12	100	94.359	ENSODEG00000017998	-	100	94.359	Octodon_degus
ENSGAGG00000021965	LSM12	100	84.615	ENSODEG00000007886	-	74	84.615	Octodon_degus
ENSGAGG00000021965	LSM12	100	84.184	ENSONIG00000007933	lsm12b	100	84.184	Oreochromis_niloticus
ENSGAGG00000021965	LSM12	99	88.660	ENSOCUG00000027889	-	100	88.660	Oryctolagus_cuniculus
ENSGAGG00000021965	LSM12	99	87.629	ENSOCUG00000024823	-	100	87.629	Oryctolagus_cuniculus
ENSGAGG00000021965	LSM12	99	88.660	ENSOCUG00000021254	-	100	88.660	Oryctolagus_cuniculus
ENSGAGG00000021965	LSM12	99	92.347	ENSOCUG00000008566	-	99	92.347	Oryctolagus_cuniculus
ENSGAGG00000021965	LSM12	100	84.694	ENSORLG00000011310	lsm12b	100	84.694	Oryzias_latipes
ENSGAGG00000021965	LSM12	100	84.694	ENSORLG00020002060	lsm12b	92	84.694	Oryzias_latipes_hni
ENSGAGG00000021965	LSM12	100	84.694	ENSORLG00015001647	lsm12b	92	84.694	Oryzias_latipes_hsok
ENSGAGG00000021965	LSM12	100	84.694	ENSOMEG00000006184	lsm12b	92	84.694	Oryzias_melastigma
ENSGAGG00000021965	LSM12	99	93.782	ENSOGAG00000010489	LSM12	99	93.782	Otolemur_garnettii
ENSGAGG00000021965	LSM12	99	90.955	ENSOARG00000006589	LSM12	99	90.955	Ovis_aries
ENSGAGG00000021965	LSM12	99	84.456	ENSPPAG00000034974	-	91	95.000	Pan_paniscus
ENSGAGG00000021965	LSM12	99	94.301	ENSPPRG00000023420	LSM12	99	94.301	Panthera_pardus
ENSGAGG00000021965	LSM12	79	94.118	ENSPTIG00000012704	-	82	94.118	Panthera_tigris_altaica
ENSGAGG00000021965	LSM12	72	90.000	ENSPTIG00000014850	-	99	90.000	Panthera_tigris_altaica
ENSGAGG00000021965	LSM12	99	94.301	ENSPTRG00000009261	LSM12	99	94.301	Pan_troglodytes
ENSGAGG00000021965	LSM12	99	94.301	ENSPANG00000021315	-	99	94.301	Papio_anubis
ENSGAGG00000021965	LSM12	99	76.562	ENSPKIG00000017932	-	98	76.562	Paramormyrops_kingsleyae
ENSGAGG00000021965	LSM12	100	85.204	ENSPKIG00000021058	lsm12b	100	85.204	Paramormyrops_kingsleyae
ENSGAGG00000021965	LSM12	100	84.184	ENSPMGG00000021344	lsm12b	100	84.184	Periophthalmus_magnuspinnatus
ENSGAGG00000021965	LSM12	99	94.301	ENSPEMG00000012199	Lsm12	99	94.301	Peromyscus_maniculatus_bairdii
ENSGAGG00000021965	LSM12	89	66.474	ENSPMAG00000005461	lsm12a	99	66.474	Petromyzon_marinus
ENSGAGG00000021965	LSM12	99	95.337	ENSPCIG00000020244	LSM12	99	95.337	Phascolarctos_cinereus
ENSGAGG00000021965	LSM12	100	82.653	ENSPFOG00000015930	lsm12b	100	82.653	Poecilia_formosa
ENSGAGG00000021965	LSM12	100	82.653	ENSPLAG00000021089	lsm12b	100	82.653	Poecilia_latipinna
ENSGAGG00000021965	LSM12	100	82.653	ENSPMEG00000012961	lsm12b	100	82.653	Poecilia_mexicana
ENSGAGG00000021965	LSM12	88	85.380	ENSPREG00000010236	lsm12b	95	85.380	Poecilia_reticulata
ENSGAGG00000021965	LSM12	99	94.301	ENSPPYG00000008344	LSM12	99	94.301	Pongo_abelii
ENSGAGG00000021965	LSM12	82	95.597	ENSPCAG00000008790	LSM12	100	95.597	Procavia_capensis
ENSGAGG00000021965	LSM12	99	94.301	ENSPCOG00000027951	LSM12	99	94.301	Propithecus_coquereli
ENSGAGG00000021965	LSM12	99	93.782	ENSPVAG00000013706	LSM12	99	93.782	Pteropus_vampyrus
ENSGAGG00000021965	LSM12	100	84.184	ENSPNYG00000003386	lsm12b	100	84.184	Pundamilia_nyererei
ENSGAGG00000021965	LSM12	100	77.041	ENSPNAG00000018435	lsm12a	100	77.041	Pygocentrus_nattereri
ENSGAGG00000021965	LSM12	100	83.673	ENSPNAG00000004186	lsm12b	100	83.673	Pygocentrus_nattereri
ENSGAGG00000021965	LSM12	99	94.301	ENSRNOG00000020894	Lsm12	99	94.301	Rattus_norvegicus
ENSGAGG00000021965	LSM12	99	94.301	ENSRBIG00000027910	LSM12	99	94.301	Rhinopithecus_bieti
ENSGAGG00000021965	LSM12	99	56.995	ENSRROG00000000537	-	98	56.995	Rhinopithecus_roxellana
ENSGAGG00000021965	LSM12	99	94.301	ENSRROG00000045530	-	99	94.301	Rhinopithecus_roxellana
ENSGAGG00000021965	LSM12	99	94.301	ENSSBOG00000025310	LSM12	99	94.301	Saimiri_boliviensis_boliviensis
ENSGAGG00000021965	LSM12	81	93.671	ENSSHAG00000014914	LSM12	100	93.671	Sarcophilus_harrisii
ENSGAGG00000021965	LSM12	100	82.143	ENSSFOG00015020392	lsm12a	100	82.143	Scleropages_formosus
ENSGAGG00000021965	LSM12	100	84.184	ENSSFOG00015009612	lsm12	100	84.184	Scleropages_formosus
ENSGAGG00000021965	LSM12	100	84.694	ENSSMAG00000008089	lsm12b	100	84.694	Scophthalmus_maximus
ENSGAGG00000021965	LSM12	100	85.714	ENSSDUG00000012711	lsm12b	100	85.714	Seriola_dumerili
ENSGAGG00000021965	LSM12	100	85.714	ENSSLDG00000007404	lsm12b	100	85.714	Seriola_lalandi_dorsalis
ENSGAGG00000021965	LSM12	79	93.464	ENSSARG00000005537	LSM12	100	93.464	Sorex_araneus
ENSGAGG00000021965	LSM12	100	97.423	ENSSPUG00000011984	LSM12	100	97.423	Sphenodon_punctatus
ENSGAGG00000021965	LSM12	100	85.204	ENSSPAG00000017058	lsm12b	100	85.204	Stegastes_partitus
ENSGAGG00000021965	LSM12	99	94.301	ENSSSCG00000032394	LSM12	99	94.301	Sus_scrofa
ENSGAGG00000021965	LSM12	100	83.673	ENSTRUG00000007121	lsm12b	100	83.673	Takifugu_rubripes
ENSGAGG00000021965	LSM12	100	84.184	ENSTNIG00000014436	lsm12b	100	84.184	Tetraodon_nigroviridis
ENSGAGG00000021965	LSM12	99	90.674	ENSTBEG00000012392	-	99	90.674	Tupaia_belangeri
ENSGAGG00000021965	LSM12	99	93.782	ENSTBEG00000012523	-	99	93.782	Tupaia_belangeri
ENSGAGG00000021965	LSM12	99	94.301	ENSTTRG00000010433	LSM12	99	94.301	Tursiops_truncatus
ENSGAGG00000021965	LSM12	99	94.301	ENSUAMG00000006313	LSM12	99	94.301	Ursus_americanus
ENSGAGG00000021965	LSM12	81	91.139	ENSUMAG00000012987	LSM12	90	91.139	Ursus_maritimus
ENSGAGG00000021965	LSM12	99	88.601	ENSVPAG00000011145	LSM12	99	88.601	Vicugna_pacos
ENSGAGG00000021965	LSM12	99	94.301	ENSVVUG00000017581	LSM12	99	94.301	Vulpes_vulpes
ENSGAGG00000021965	LSM12	83	62.733	ENSXETG00000003371	lsm12	78	62.733	Xenopus_tropicalis
ENSGAGG00000021965	LSM12	100	83.673	ENSXCOG00000003994	lsm12b	100	83.673	Xiphophorus_couchianus
ENSGAGG00000021965	LSM12	100	83.673	ENSXMAG00000020950	lsm12b	100	83.673	Xiphophorus_maculatus