EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAGG00000022043 (Gene tree)
Gene ID: -
Gene Symbol: TNRC6C
Alias: FLJ20015|KIAA1582
Full Name: trinucleotide repeat containing 6C
Gene Type: protein_coding
Species: Gopherus_agassizii
Status: putative
Strand: Minus strand
Length: 88260 bases
Position: chrPPEB01000356.1:159042-247301
Accession: 29318
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAGP00000030624	Ago_hook	PF10427.9	1.3e-19	1	1
ENSGAGP00000030617	Ago_hook	PF10427.9	2.5e-19	1	1
ENSGAGP00000030621	Ago_hook	PF10427.9	2.6e-19	1	1
ENSGAGP00000030624	RRM_1	PF00076.22	0.00026	1	1
ENSGAGP00000030621	RRM_1	PF00076.22	0.00027	1	1
ENSGAGP00000030617	RRM_1	PF00076.22	0.00028	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAGT00000034740	TNRC6C-201	5884	-	ENSGAGP00000030617	1803 (aa)	-	-
ENSGAGT00000034744	TNRC6C-202	5767	-	ENSGAGP00000030621	1764 (aa)	-	-
ENSGAGT00000034747	TNRC6C-203	5617	-	ENSGAGP00000030624	1714 (aa)	-	-

Gene Model

Click here to download ENSGAGG00000022043's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAGG00000022043's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAGG00000022043	TNRC6C	99	37.493	ENSGAGG00000025188	TNRC6B	90	38.148
ENSGAGG00000022043	TNRC6C	99	44.287	ENSGAGG00000023209	TNRC6A	98	44.432

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAGG00000022043	TNRC6C	99	87.438	ENSG00000078687	TNRC6C	100	89.474	Homo_sapiens
ENSGAGG00000022043	TNRC6C	76	56.460	ENSAPOG00000019749	tnrc6c1	100	51.635	Acanthochromis_polyacanthus
ENSGAGG00000022043	TNRC6C	99	85.880	ENSAMEG00000013756	TNRC6C	99	86.253	Ailuropoda_melanoleuca
ENSGAGG00000022043	TNRC6C	99	48.767	ENSACIG00000008075	tnrc6c1	99	50.053	Amphilophus_citrinellus
ENSGAGG00000022043	TNRC6C	74	68.581	ENSAOCG00000023968	tnrc6c1	100	51.822	Amphiprion_ocellaris
ENSGAGG00000022043	TNRC6C	77	55.165	ENSAPEG00000009020	tnrc6c1	100	51.768	Amphiprion_percula
ENSGAGG00000022043	TNRC6C	99	92.342	ENSAPLG00000005456	TNRC6C	94	91.976	Anas_platyrhynchos
ENSGAGG00000022043	TNRC6C	99	93.155	ENSACAG00000016198	TNRC6C	92	93.236	Anolis_carolinensis
ENSGAGG00000022043	TNRC6C	99	87.045	ENSANAG00000021554	TNRC6C	100	86.895	Aotus_nancymaae
ENSGAGG00000022043	TNRC6C	99	49.209	ENSACLG00000000424	tnrc6c1	99	49.711	Astatotilapia_calliptera
ENSGAGG00000022043	TNRC6C	96	89.675	ENSBTAG00000018658	TNRC6C	100	84.870	Bos_taurus
ENSGAGG00000022043	TNRC6C	99	86.714	ENSCJAG00000019431	TNRC6C	100	86.541	Callithrix_jacchus
ENSGAGG00000022043	TNRC6C	99	87.251	ENSCAFG00000005224	TNRC6C	99	80.543	Canis_familiaris
ENSGAGG00000022043	TNRC6C	99	86.858	ENSCAFG00020006661	TNRC6C	100	86.382	Canis_lupus_dingo
ENSGAGG00000022043	TNRC6C	99	83.655	ENSCHIG00000026004	TNRC6C	100	84.713	Capra_hircus
ENSGAGG00000022043	TNRC6C	96	88.086	ENSTSYG00000005403	TNRC6C	100	87.854	Carlito_syrichta
ENSGAGG00000022043	TNRC6C	99	79.372	ENSCAPG00000007307	TNRC6C	93	79.502	Cavia_aperea
ENSGAGG00000022043	TNRC6C	99	84.264	ENSCPOG00000000467	TNRC6C	100	85.230	Cavia_porcellus
ENSGAGG00000022043	TNRC6C	99	87.045	ENSCCAG00000030524	TNRC6C	100	87.341	Cebus_capucinus
ENSGAGG00000022043	TNRC6C	99	87.431	ENSCATG00000033135	TNRC6C	100	87.630	Cercocebus_atys
ENSGAGG00000022043	TNRC6C	99	86.464	ENSCLAG00000011139	TNRC6C	92	86.553	Chinchilla_lanigera
ENSGAGG00000022043	TNRC6C	99	87.652	ENSCSAG00000005167	TNRC6C	93	87.799	Chlorocebus_sabaeus
ENSGAGG00000022043	TNRC6C	74	89.633	ENSCHOG00000000088	TNRC6C	75	90.499	Choloepus_hoffmanni
ENSGAGG00000022043	TNRC6C	100	98.753	ENSCPBG00000027960	TNRC6C	100	98.753	Chrysemys_picta_bellii
ENSGAGG00000022043	TNRC6C	99	87.045	ENSCANG00000041771	TNRC6C	100	87.861	Colobus_angolensis_palliatus
ENSGAGG00000022043	TNRC6C	99	83.831	ENSCGRG00001022686	Tnrc6c	100	83.284	Cricetulus_griseus_chok1gshd
ENSGAGG00000022043	TNRC6C	99	84.211	ENSCGRG00000018041	Tnrc6c	100	83.284	Cricetulus_griseus_crigri
ENSGAGG00000022043	TNRC6C	99	48.019	ENSCSEG00000012744	tnrc6c1	95	50.109	Cynoglossus_semilaevis
ENSGAGG00000022043	TNRC6C	99	53.683	ENSDARG00000076847	tnrc6c1	99	55.268	Danio_rerio
ENSGAGG00000022043	TNRC6C	99	88.137	ENSDNOG00000003247	TNRC6C	95	88.009	Dasypus_novemcinctus
ENSGAGG00000022043	TNRC6C	99	81.254	ENSDORG00000004558	Tnrc6c	100	81.743	Dipodomys_ordii
ENSGAGG00000022043	TNRC6C	88	79.319	ENSETEG00000005527	TNRC6C	89	79.859	Echinops_telfairi
ENSGAGG00000022043	TNRC6C	95	87.034	ENSEASG00005004799	TNRC6C	100	86.679	Equus_asinus_asinus
ENSGAGG00000022043	TNRC6C	99	87.025	ENSECAG00000012486	TNRC6C	93	86.830	Equus_caballus
ENSGAGG00000022043	TNRC6C	94	85.956	ENSEEUG00000010008	TNRC6C	96	85.932	Erinaceus_europaeus
ENSGAGG00000022043	TNRC6C	99	85.044	ENSFCAG00000028358	TNRC6C	100	85.638	Felis_catus
ENSGAGG00000022043	TNRC6C	96	91.927	ENSFALG00000000848	TNRC6C	100	91.643	Ficedula_albicollis
ENSGAGG00000022043	TNRC6C	98	86.149	ENSFDAG00000010368	TNRC6C	100	86.609	Fukomys_damarensis
ENSGAGG00000022043	TNRC6C	100	49.101	ENSFHEG00000002936	tnrc6c1	100	49.709	Fundulus_heteroclitus
ENSGAGG00000022043	TNRC6C	100	94.398	ENSGALG00000001725	TNRC6C	100	94.415	Gallus_gallus
ENSGAGG00000022043	TNRC6C	100	50.621	ENSGAFG00000019019	tnrc6c1	100	51.051	Gambusia_affinis
ENSGAGG00000022043	TNRC6C	92	54.288	ENSGACG00000012320	tnrc6c1	92	49.595	Gasterosteus_aculeatus
ENSGAGG00000022043	TNRC6C	99	86.777	ENSGGOG00000011304	TNRC6C	100	86.886	Gorilla_gorilla
ENSGAGG00000022043	TNRC6C	100	49.459	ENSHBUG00000010846	tnrc6c1	100	49.946	Haplochromis_burtoni
ENSGAGG00000022043	TNRC6C	99	86.240	ENSHGLG00000004809	TNRC6C	93	86.154	Heterocephalus_glaber_female
ENSGAGG00000022043	TNRC6C	99	85.513	ENSHGLG00100012597	TNRC6C	93	85.649	Heterocephalus_glaber_male
ENSGAGG00000022043	TNRC6C	99	53.581	ENSIPUG00000000818	tnrc6c1	93	53.904	Ictalurus_punctatus
ENSGAGG00000022043	TNRC6C	99	85.642	ENSSTOG00000009101	TNRC6C	100	86.625	Ictidomys_tridecemlineatus
ENSGAGG00000022043	TNRC6C	99	83.268	ENSJJAG00000017055	Tnrc6c	92	83.390	Jaculus_jaculus
ENSGAGG00000022043	TNRC6C	98	49.891	ENSKMAG00000021023	tnrc6c1	97	53.709	Kryptolebias_marmoratus
ENSGAGG00000022043	TNRC6C	98	77.981	ENSLACG00000015283	TNRC6C	100	78.380	Latimeria_chalumnae
ENSGAGG00000022043	TNRC6C	99	57.799	ENSLOCG00000013377	tnrc6c1	88	75.566	Lepisosteus_oculatus
ENSGAGG00000022043	TNRC6C	99	87.006	ENSLAFG00000011122	TNRC6C	99	82.802	Loxodonta_africana
ENSGAGG00000022043	TNRC6C	99	87.486	ENSMFAG00000043943	TNRC6C	100	87.688	Macaca_fascicularis
ENSGAGG00000022043	TNRC6C	99	87.874	ENSMMUG00000011924	TNRC6C	100	87.367	Macaca_mulatta
ENSGAGG00000022043	TNRC6C	99	87.486	ENSMNEG00000030405	TNRC6C	100	87.367	Macaca_nemestrina
ENSGAGG00000022043	TNRC6C	99	87.486	ENSMLEG00000033436	TNRC6C	100	87.688	Mandrillus_leucophaeus
ENSGAGG00000022043	TNRC6C	90	55.627	ENSMAMG00000023613	tnrc6c1	100	52.055	Mastacembelus_armatus
ENSGAGG00000022043	TNRC6C	100	48.303	ENSMZEG00005010920	tnrc6c1	100	48.789	Maylandia_zebra
ENSGAGG00000022043	TNRC6C	99	85.352	ENSMGAG00000003906	TNRC6C	94	85.011	Meleagris_gallopavo
ENSGAGG00000022043	TNRC6C	95	84.403	ENSMAUG00000021618	Tnrc6c	100	84.108	Mesocricetus_auratus
ENSGAGG00000022043	TNRC6C	99	87.810	ENSMICG00000003952	TNRC6C	100	87.449	Microcebus_murinus
ENSGAGG00000022043	TNRC6C	99	85.577	ENSMOCG00000015879	Tnrc6c	100	85.985	Microtus_ochrogaster
ENSGAGG00000022043	TNRC6C	75	56.844	ENSMMOG00000005203	tnrc6c1	97	53.008	Mola_mola
ENSGAGG00000022043	TNRC6C	99	88.689	ENSMODG00000001785	TNRC6C	92	88.222	Monodelphis_domestica
ENSGAGG00000022043	TNRC6C	99	85.239	MGP_CAROLIEiJ_G0017465	Tnrc6c	100	85.698	Mus_caroli
ENSGAGG00000022043	TNRC6C	99	84.901	ENSMUSG00000025571	Tnrc6c	100	85.353	Mus_musculus
ENSGAGG00000022043	TNRC6C	99	85.239	MGP_PahariEiJ_G0018593	Tnrc6c	100	85.698	Mus_pahari
ENSGAGG00000022043	TNRC6C	99	84.997	MGP_SPRETEiJ_G0018309	Tnrc6c	100	85.411	Mus_spretus
ENSGAGG00000022043	TNRC6C	99	85.128	ENSMPUG00000013348	TNRC6C	91	85.315	Mustela_putorius_furo
ENSGAGG00000022043	TNRC6C	99	78.273	ENSMLUG00000014431	TNRC6C	91	79.095	Myotis_lucifugus
ENSGAGG00000022043	TNRC6C	99	85.513	ENSNGAG00000012203	Tnrc6c	92	85.479	Nannospalax_galili
ENSGAGG00000022043	TNRC6C	100	49.757	ENSNBRG00000005344	tnrc6c1	99	50.212	Neolamprologus_brichardi
ENSGAGG00000022043	TNRC6C	99	85.116	ENSNLEG00000000047	TNRC6C	93	85.080	Nomascus_leucogenys
ENSGAGG00000022043	TNRC6C	96	83.089	ENSMEUG00000005104	TNRC6C	100	82.795	Notamacropus_eugenii
ENSGAGG00000022043	TNRC6C	95	86.864	ENSODEG00000012499	TNRC6C	100	87.219	Octodon_degus
ENSGAGG00000022043	TNRC6C	78	54.149	ENSONIG00000002210	tnrc6c1	96	54.175	Oreochromis_niloticus
ENSGAGG00000022043	TNRC6C	99	63.164	ENSOANG00000009758	-	94	63.382	Ornithorhynchus_anatinus
ENSGAGG00000022043	TNRC6C	84	78.120	ENSOCUG00000006122	TNRC6C	87	68.021	Oryctolagus_cuniculus
ENSGAGG00000022043	TNRC6C	100	48.945	ENSORLG00000009837	tnrc6c1	100	69.145	Oryzias_latipes
ENSGAGG00000022043	TNRC6C	100	47.455	ENSORLG00020016510	tnrc6c1	100	50.285	Oryzias_latipes_hni
ENSGAGG00000022043	TNRC6C	81	43.813	ENSORLG00015000171	tnrc6c1	98	45.792	Oryzias_latipes_hsok
ENSGAGG00000022043	TNRC6C	100	49.243	ENSOMEG00000000357	tnrc6c1	99	50.299	Oryzias_melastigma
ENSGAGG00000022043	TNRC6C	96	85.888	ENSOGAG00000007197	TNRC6C	100	86.235	Otolemur_garnettii
ENSGAGG00000022043	TNRC6C	95	80.428	ENSOARG00000006041	TNRC6C	91	81.035	Ovis_aries
ENSGAGG00000022043	TNRC6C	99	87.321	ENSPPAG00000027160	TNRC6C	100	87.514	Pan_paniscus
ENSGAGG00000022043	TNRC6C	99	85.044	ENSPPRG00000018881	TNRC6C	100	85.638	Panthera_pardus
ENSGAGG00000022043	TNRC6C	73	72.713	ENSPTIG00000008791	TNRC6C	70	72.651	Panthera_tigris_altaica
ENSGAGG00000022043	TNRC6C	99	87.321	ENSPTRG00000009699	TNRC6C	100	87.514	Pan_troglodytes
ENSGAGG00000022043	TNRC6C	99	87.486	ENSPANG00000019994	TNRC6C	100	87.522	Papio_anubis
ENSGAGG00000022043	TNRC6C	57	63.576	ENSPKIG00000005428	tnrc6c1	100	52.188	Paramormyrops_kingsleyae
ENSGAGG00000022043	TNRC6C	98	94.476	ENSPSIG00000018069	TNRC6C	100	94.534	Pelodiscus_sinensis
ENSGAGG00000022043	TNRC6C	69	55.388	ENSPMGG00000022911	tnrc6c1	97	64.898	Periophthalmus_magnuspinnatus
ENSGAGG00000022043	TNRC6C	99	84.845	ENSPEMG00000009785	Tnrc6c	100	83.108	Peromyscus_maniculatus_bairdii
ENSGAGG00000022043	TNRC6C	56	85.553	ENSPCIG00000017421	-	99	85.143	Phascolarctos_cinereus
ENSGAGG00000022043	TNRC6C	99	50.570	ENSPFOG00000012560	tnrc6c1	96	59.213	Poecilia_formosa
ENSGAGG00000022043	TNRC6C	92	52.384	ENSPLAG00000021055	tnrc6c1	97	52.734	Poecilia_latipinna
ENSGAGG00000022043	TNRC6C	99	87.874	ENSPPYG00000008679	TNRC6C	91	88.022	Pongo_abelii
ENSGAGG00000022043	TNRC6C	92	90.521	ENSPCAG00000012510	TNRC6C	94	90.521	Procavia_capensis
ENSGAGG00000022043	TNRC6C	96	88.208	ENSPCOG00000021451	TNRC6C	100	87.977	Propithecus_coquereli
ENSGAGG00000022043	TNRC6C	94	88.136	ENSPVAG00000002008	TNRC6C	95	88.136	Pteropus_vampyrus
ENSGAGG00000022043	TNRC6C	100	48.356	ENSPNYG00000014477	tnrc6c1	100	48.842	Pundamilia_nyererei
ENSGAGG00000022043	TNRC6C	95	84.820	ENSRNOG00000022395	Tnrc6c	100	85.174	Rattus_norvegicus
ENSGAGG00000022043	TNRC6C	99	87.596	ENSRBIG00000027777	TNRC6C	100	87.803	Rhinopithecus_bieti
ENSGAGG00000022043	TNRC6C	99	87.596	ENSRROG00000042912	TNRC6C	100	87.803	Rhinopithecus_roxellana
ENSGAGG00000022043	TNRC6C	99	86.714	ENSSBOG00000023981	TNRC6C	100	86.994	Saimiri_boliviensis_boliviensis
ENSGAGG00000022043	TNRC6C	51	94.589	ENSSHAG00000018330	-	100	93.831	Sarcophilus_harrisii
ENSGAGG00000022043	TNRC6C	74	60.114	ENSSFOG00015006475	tnrc6c1	95	53.925	Scleropages_formosus
ENSGAGG00000022043	TNRC6C	83	59.508	ENSSFOG00015004735	-	99	62.304	Scleropages_formosus
ENSGAGG00000022043	TNRC6C	100	49.570	ENSSMAG00000012761	tnrc6c1	99	51.943	Scophthalmus_maximus
ENSGAGG00000022043	TNRC6C	99	51.104	ENSSDUG00000002366	tnrc6c1	98	52.524	Seriola_dumerili
ENSGAGG00000022043	TNRC6C	89	52.346	ENSSLDG00000025613	tnrc6c1	97	52.548	Seriola_lalandi_dorsalis
ENSGAGG00000022043	TNRC6C	90	90.756	ENSSARG00000006816	TNRC6C	91	90.756	Sorex_araneus
ENSGAGG00000022043	TNRC6C	80	91.992	ENSSPUG00000007341	TNRC6C	92	91.923	Sphenodon_punctatus
ENSGAGG00000022043	TNRC6C	74	56.264	ENSSPAG00000014977	tnrc6c1	98	51.029	Stegastes_partitus
ENSGAGG00000022043	TNRC6C	92	87.819	ENSSSCG00000034373	TNRC6C	100	88.780	Sus_scrofa
ENSGAGG00000022043	TNRC6C	98	93.617	ENSTGUG00000007733	TNRC6C	100	93.675	Taeniopygia_guttata
ENSGAGG00000022043	TNRC6C	77	55.024	ENSTRUG00000011685	tnrc6c1	97	51.259	Takifugu_rubripes
ENSGAGG00000022043	TNRC6C	94	55.093	ENSTNIG00000005273	tnrc6c1	100	62.439	Tetraodon_nigroviridis
ENSGAGG00000022043	TNRC6C	61	89.062	ENSTBEG00000005046	TNRC6C	95	89.062	Tupaia_belangeri
ENSGAGG00000022043	TNRC6C	98	86.862	ENSTTRG00000010828	TNRC6C	99	86.747	Tursiops_truncatus
ENSGAGG00000022043	TNRC6C	99	85.171	ENSUMAG00000013614	TNRC6C	93	85.469	Ursus_maritimus
ENSGAGG00000022043	TNRC6C	50	74.808	ENSVPAG00000006765	-	99	78.021	Vicugna_pacos
ENSGAGG00000022043	TNRC6C	95	87.567	ENSVVUG00000015268	TNRC6C	100	87.567	Vulpes_vulpes
ENSGAGG00000022043	TNRC6C	95	76.643	ENSXETG00000019470	tnrc6c	100	76.350	Xenopus_tropicalis
ENSGAGG00000022043	TNRC6C	100	50.648	ENSXMAG00000025971	tnrc6c1	100	51.051	Xiphophorus_maculatus