EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGAGG00000022217 (Gene tree)
Gene ID: -
Gene Symbol: UPF1
Alias: HUPF1|KIAA0221|NORF1|RENT1|pNORF1|smg-2
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Gopherus_agassizii
Status: putative
Strand: Minus strand
Length: 28192 bases
Position: chrPPEB01002275.1:136793-164984
Accession: 9962
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAGP00000030895	UPF1_Zn_bind	PF09416.10	7.9e-75	1	1
ENSGAGP00000030895	ResIII	PF04851.15	2.8e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAGT00000035036	UPF1-201	3767	-	ENSGAGP00000030895	1108 (aa)	-	-

Gene Model

Click here to download ENSGAGG00000022217's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAGG00000022217's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAGG00000022217	UPF1	100	97.143	ENSG00000005007	UPF1	100	97.143	Homo_sapiens
ENSGAGG00000022217	UPF1	100	92.183	ENSAPOG00000023773	upf1	100	92.363	Acanthochromis_polyacanthus
ENSGAGG00000022217	UPF1	100	93.243	ENSAPOG00000010916	-	100	93.243	Acanthochromis_polyacanthus
ENSGAGG00000022217	UPF1	100	96.536	ENSAMEG00000011474	UPF1	100	96.536	Ailuropoda_melanoleuca
ENSGAGG00000022217	UPF1	93	94.829	ENSACIG00000010985	-	100	94.927	Amphilophus_citrinellus
ENSGAGG00000022217	UPF1	100	92.509	ENSACIG00000019949	upf1	100	92.453	Amphilophus_citrinellus
ENSGAGG00000022217	UPF1	100	91.726	ENSAOCG00000018519	upf1	100	92.260	Amphiprion_ocellaris
ENSGAGG00000022217	UPF1	100	93.243	ENSAOCG00000006352	-	100	93.243	Amphiprion_ocellaris
ENSGAGG00000022217	UPF1	100	91.726	ENSAPEG00000016344	upf1	100	92.260	Amphiprion_percula
ENSGAGG00000022217	UPF1	100	93.243	ENSAPEG00000006292	-	100	93.243	Amphiprion_percula
ENSGAGG00000022217	UPF1	100	91.119	ENSATEG00000017867	upf1	100	91.741	Anabas_testudineus
ENSGAGG00000022217	UPF1	100	93.423	ENSATEG00000016606	-	100	93.423	Anabas_testudineus
ENSGAGG00000022217	UPF1	94	98.672	ENSAPLG00000009175	UPF1	100	98.672	Anas_platyrhynchos
ENSGAGG00000022217	UPF1	94	96.480	ENSANAG00000024107	UPF1	95	96.480	Aotus_nancymaae
ENSGAGG00000022217	UPF1	100	92.238	ENSACLG00000007181	upf1	100	92.183	Astatotilapia_calliptera
ENSGAGG00000022217	UPF1	100	93.063	ENSACLG00000022630	-	100	92.973	Astatotilapia_calliptera
ENSGAGG00000022217	UPF1	100	93.969	ENSAMXG00000042187	upf1	100	94.419	Astyanax_mexicanus
ENSGAGG00000022217	UPF1	100	96.631	ENSBTAG00000020922	UPF1	100	96.631	Bos_taurus
ENSGAGG00000022217	UPF1	88	51.837	WBGene00004880	smg-2	95	49.174	Caenorhabditis_elegans
ENSGAGG00000022217	UPF1	100	96.198	ENSCJAG00000019627	UPF1	100	96.198	Callithrix_jacchus
ENSGAGG00000022217	UPF1	100	96.375	ENSCAFG00000014578	UPF1	100	96.375	Canis_familiaris
ENSGAGG00000022217	UPF1	100	97.321	ENSCAFG00020012347	UPF1	100	97.321	Canis_lupus_dingo
ENSGAGG00000022217	UPF1	100	97.583	ENSCHIG00000011018	UPF1	100	97.583	Capra_hircus
ENSGAGG00000022217	UPF1	96	96.639	ENSTSYG00000008877	UPF1	99	96.639	Carlito_syrichta
ENSGAGG00000022217	UPF1	94	97.241	ENSCAPG00000005758	UPF1	95	97.241	Cavia_aperea
ENSGAGG00000022217	UPF1	100	95.804	ENSCPOG00000025463	UPF1	100	95.804	Cavia_porcellus
ENSGAGG00000022217	UPF1	100	97.143	ENSCCAG00000032175	UPF1	100	97.143	Cebus_capucinus
ENSGAGG00000022217	UPF1	94	97.716	ENSCATG00000040306	UPF1	98	97.716	Cercocebus_atys
ENSGAGG00000022217	UPF1	96	96.204	ENSCLAG00000004037	UPF1	99	97.621	Chinchilla_lanigera
ENSGAGG00000022217	UPF1	100	97.143	ENSCSAG00000005276	UPF1	100	97.143	Chlorocebus_sabaeus
ENSGAGG00000022217	UPF1	100	99.012	ENSCPBG00000012513	UPF1	100	99.012	Chrysemys_picta_bellii
ENSGAGG00000022217	UPF1	77	79.143	ENSCING00000021399	-	99	79.143	Ciona_intestinalis
ENSGAGG00000022217	UPF1	99	72.079	ENSCSAVG00000006533	-	99	72.257	Ciona_savignyi
ENSGAGG00000022217	UPF1	96	96.732	ENSCANG00000029819	UPF1	99	96.732	Colobus_angolensis_palliatus
ENSGAGG00000022217	UPF1	100	97.127	ENSCGRG00001021067	Upf1	100	97.127	Cricetulus_griseus_chok1gshd
ENSGAGG00000022217	UPF1	96	96.078	ENSCGRG00000013480	Upf1	99	96.078	Cricetulus_griseus_crigri
ENSGAGG00000022217	UPF1	100	87.297	ENSCSEG00000017239	upf1	100	86.937	Cynoglossus_semilaevis
ENSGAGG00000022217	UPF1	100	93.327	ENSCSEG00000016159	-	100	93.237	Cynoglossus_semilaevis
ENSGAGG00000022217	UPF1	100	92.973	ENSCVAG00000010561	upf1	100	92.883	Cyprinodon_variegatus
ENSGAGG00000022217	UPF1	100	93.879	ENSDARG00000016302	upf1	100	94.329	Danio_rerio
ENSGAGG00000022217	UPF1	96	93.488	ENSDORG00000009984	Upf1	95	94.772	Dipodomys_ordii
ENSGAGG00000022217	UPF1	85	71.682	FBgn0030354	Upf1	84	68.395	Drosophila_melanogaster
ENSGAGG00000022217	UPF1	55	86.985	ENSEBUG00000010069	upf1	96	86.985	Eptatretus_burgeri
ENSGAGG00000022217	UPF1	100	97.583	ENSEASG00005006549	UPF1	100	97.583	Equus_asinus_asinus
ENSGAGG00000022217	UPF1	100	97.583	ENSECAG00000010639	UPF1	100	97.583	Equus_caballus
ENSGAGG00000022217	UPF1	100	91.219	ENSELUG00000020917	upf1	100	91.398	Esox_lucius
ENSGAGG00000022217	UPF1	100	92.569	ENSELUG00000012916	-	100	92.487	Esox_lucius
ENSGAGG00000022217	UPF1	100	96.463	ENSFCAG00000009757	UPF1	100	96.463	Felis_catus
ENSGAGG00000022217	UPF1	96	97.753	ENSFALG00000009312	UPF1	98	97.753	Ficedula_albicollis
ENSGAGG00000022217	UPF1	96	95.741	ENSFDAG00000014816	UPF1	99	97.526	Fukomys_damarensis
ENSGAGG00000022217	UPF1	86	95.012	ENSFHEG00000016276	-	96	95.012	Fundulus_heteroclitus
ENSGAGG00000022217	UPF1	100	89.803	ENSFHEG00000006428	upf1	100	89.714	Fundulus_heteroclitus
ENSGAGG00000022217	UPF1	100	91.971	ENSGMOG00000007541	upf1	100	92.239	Gadus_morhua
ENSGAGG00000022217	UPF1	100	98.568	ENSGALG00000003220	UPF1	100	98.568	Gallus_gallus
ENSGAGG00000022217	UPF1	100	92.786	ENSGAFG00000004831	upf1	100	92.696	Gambusia_affinis
ENSGAGG00000022217	UPF1	62	95.533	ENSGAFG00000015443	-	85	95.533	Gambusia_affinis
ENSGAGG00000022217	UPF1	94	98.846	ENSGGOG00000002608	UPF1	99	98.846	Gorilla_gorilla
ENSGAGG00000022217	UPF1	90	87.356	ENSHBUG00000014694	upf1	100	87.356	Haplochromis_burtoni
ENSGAGG00000022217	UPF1	87	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSGAGG00000022217	UPF1	100	96.018	ENSHGLG00000010900	UPF1	100	96.018	Heterocephalus_glaber_female
ENSGAGG00000022217	UPF1	96	94.069	ENSHGLG00100005904	UPF1	96	95.814	Heterocephalus_glaber_male
ENSGAGG00000022217	UPF1	100	92.335	ENSHCOG00000008918	upf1	100	93.810	Hippocampus_comes
ENSGAGG00000022217	UPF1	100	94.149	ENSIPUG00000005108	UPF1	100	94.509	Ictalurus_punctatus
ENSGAGG00000022217	UPF1	100	96.964	ENSSTOG00000009196	UPF1	100	96.964	Ictidomys_tridecemlineatus
ENSGAGG00000022217	UPF1	100	95.904	ENSJJAG00000023151	Upf1	100	95.904	Jaculus_jaculus
ENSGAGG00000022217	UPF1	100	93.243	ENSKMAG00000004962	upf1	100	93.153	Kryptolebias_marmoratus
ENSGAGG00000022217	UPF1	100	93.159	ENSLBEG00000027848	-	100	92.979	Labrus_bergylta
ENSGAGG00000022217	UPF1	100	90.569	ENSLBEG00000014862	upf1	100	91.637	Labrus_bergylta
ENSGAGG00000022217	UPF1	63	97.704	ENSLACG00000008482	UPF1	100	97.704	Latimeria_chalumnae
ENSGAGG00000022217	UPF1	100	95.942	ENSLOCG00000002072	upf1	100	95.942	Lepisosteus_oculatus
ENSGAGG00000022217	UPF1	100	96.011	ENSLAFG00000014963	UPF1	100	96.011	Loxodonta_africana
ENSGAGG00000022217	UPF1	100	96.794	ENSMFAG00000037748	UPF1	100	96.794	Macaca_fascicularis
ENSGAGG00000022217	UPF1	100	96.628	ENSMMUG00000023286	UPF1	100	96.628	Macaca_mulatta
ENSGAGG00000022217	UPF1	100	96.794	ENSMNEG00000000046	UPF1	100	96.794	Macaca_nemestrina
ENSGAGG00000022217	UPF1	94	97.812	ENSMLEG00000028404	UPF1	99	97.812	Mandrillus_leucophaeus
ENSGAGG00000022217	UPF1	100	92.529	ENSMAMG00000006231	-	100	92.889	Mastacembelus_armatus
ENSGAGG00000022217	UPF1	100	90.764	ENSMAMG00000006229	upf1	100	91.474	Mastacembelus_armatus
ENSGAGG00000022217	UPF1	100	93.063	ENSMZEG00005016386	-	100	92.973	Maylandia_zebra
ENSGAGG00000022217	UPF1	100	90.861	ENSMZEG00005003489	upf1	100	91.882	Maylandia_zebra
ENSGAGG00000022217	UPF1	94	98.194	ENSMGAG00000004745	UPF1	100	98.194	Meleagris_gallopavo
ENSGAGG00000022217	UPF1	96	94.674	ENSMAUG00000011398	Upf1	95	97.241	Mesocricetus_auratus
ENSGAGG00000022217	UPF1	100	97.143	ENSMICG00000001659	UPF1	100	97.143	Microcebus_murinus
ENSGAGG00000022217	UPF1	100	96.178	ENSMOCG00000005699	Upf1	100	96.178	Microtus_ochrogaster
ENSGAGG00000022217	UPF1	94	92.440	ENSMMOG00000007537	-	99	92.536	Mola_mola
ENSGAGG00000022217	UPF1	100	91.516	ENSMMOG00000007881	upf1	100	91.794	Mola_mola
ENSGAGG00000022217	UPF1	100	96.646	ENSMODG00000003689	UPF1	100	96.646	Monodelphis_domestica
ENSGAGG00000022217	UPF1	100	91.877	ENSMALG00000000144	upf1	100	92.058	Monopterus_albus
ENSGAGG00000022217	UPF1	100	91.928	ENSMALG00000018100	-	100	91.831	Monopterus_albus
ENSGAGG00000022217	UPF1	100	97.038	MGP_CAROLIEiJ_G0031142	Upf1	100	97.038	Mus_caroli
ENSGAGG00000022217	UPF1	100	97.038	ENSMUSG00000058301	Upf1	100	97.038	Mus_musculus
ENSGAGG00000022217	UPF1	100	97.038	MGP_PahariEiJ_G0021607	Upf1	100	97.038	Mus_pahari
ENSGAGG00000022217	UPF1	100	97.038	MGP_SPRETEiJ_G0032260	Upf1	100	97.038	Mus_spretus
ENSGAGG00000022217	UPF1	100	97.321	ENSMPUG00000015516	UPF1	100	97.321	Mustela_putorius_furo
ENSGAGG00000022217	UPF1	99	97.133	ENSMLUG00000012122	UPF1	99	97.133	Myotis_lucifugus
ENSGAGG00000022217	UPF1	100	95.833	ENSNGAG00000024107	Upf1	100	95.833	Nannospalax_galili
ENSGAGG00000022217	UPF1	100	90.523	ENSNBRG00000000670	upf1	100	90.476	Neolamprologus_brichardi
ENSGAGG00000022217	UPF1	100	89.661	ENSNBRG00000022069	-	100	93.878	Neolamprologus_brichardi
ENSGAGG00000022217	UPF1	94	92.008	ENSNLEG00000006062	UPF1	99	92.008	Nomascus_leucogenys
ENSGAGG00000022217	UPF1	83	95.294	ENSMEUG00000014146	-	83	95.294	Notamacropus_eugenii
ENSGAGG00000022217	UPF1	94	91.058	ENSOPRG00000014018	UPF1	99	91.058	Ochotona_princeps
ENSGAGG00000022217	UPF1	100	96.515	ENSODEG00000012426	UPF1	100	96.515	Octodon_degus
ENSGAGG00000022217	UPF1	100	93.063	ENSONIG00000012729	-	100	92.973	Oreochromis_niloticus
ENSGAGG00000022217	UPF1	100	91.127	ENSONIG00000010452	upf1	100	92.150	Oreochromis_niloticus
ENSGAGG00000022217	UPF1	100	96.368	ENSOANG00000004568	UPF1	100	96.368	Ornithorhynchus_anatinus
ENSGAGG00000022217	UPF1	100	93.159	ENSORLG00000008453	upf1	100	92.883	Oryzias_latipes
ENSGAGG00000022217	UPF1	100	93.153	ENSORLG00020014758	upf1	100	92.973	Oryzias_latipes_hni
ENSGAGG00000022217	UPF1	100	93.153	ENSORLG00015010165	upf1	100	92.973	Oryzias_latipes_hsok
ENSGAGG00000022217	UPF1	100	93.063	ENSOMEG00000003665	upf1	100	92.973	Oryzias_melastigma
ENSGAGG00000022217	UPF1	100	97.232	ENSOGAG00000012866	UPF1	100	97.232	Otolemur_garnettii
ENSGAGG00000022217	UPF1	96	95.396	ENSOARG00000010739	UPF1	100	95.396	Ovis_aries
ENSGAGG00000022217	UPF1	96	96.642	ENSPPAG00000043884	UPF1	97	96.642	Pan_paniscus
ENSGAGG00000022217	UPF1	100	96.463	ENSPPRG00000023470	UPF1	100	96.463	Panthera_pardus
ENSGAGG00000022217	UPF1	94	96.929	ENSPTIG00000010159	UPF1	99	96.929	Panthera_tigris_altaica
ENSGAGG00000022217	UPF1	100	96.794	ENSPTRG00000010721	UPF1	100	96.794	Pan_troglodytes
ENSGAGG00000022217	UPF1	100	96.794	ENSPANG00000008847	UPF1	100	96.794	Papio_anubis
ENSGAGG00000022217	UPF1	91	95.205	ENSPKIG00000006069	upf1	97	95.108	Paramormyrops_kingsleyae
ENSGAGG00000022217	UPF1	69	98.562	ENSPSIG00000009491	UPF1	100	98.562	Pelodiscus_sinensis
ENSGAGG00000022217	UPF1	100	90.027	ENSPMGG00000017327	upf1	100	90.045	Periophthalmus_magnuspinnatus
ENSGAGG00000022217	UPF1	100	96.178	ENSPEMG00000001085	Upf1	100	96.178	Peromyscus_maniculatus_bairdii
ENSGAGG00000022217	UPF1	100	87.871	ENSPMAG00000001206	upf1	100	87.511	Petromyzon_marinus
ENSGAGG00000022217	UPF1	100	98.211	ENSPCIG00000006156	UPF1	100	98.211	Phascolarctos_cinereus
ENSGAGG00000022217	UPF1	100	92.876	ENSPLAG00000016232	-	100	92.786	Poecilia_latipinna
ENSGAGG00000022217	UPF1	100	90.527	ENSPLAG00000018155	-	100	90.259	Poecilia_latipinna
ENSGAGG00000022217	UPF1	100	92.793	ENSPMEG00000016319	-	100	92.703	Poecilia_mexicana
ENSGAGG00000022217	UPF1	100	91.089	ENSPMEG00000011443	-	100	90.819	Poecilia_mexicana
ENSGAGG00000022217	UPF1	100	92.696	ENSPREG00000011247	-	100	92.606	Poecilia_reticulata
ENSGAGG00000022217	UPF1	100	90.885	ENSPREG00000009940	upf1	100	90.795	Poecilia_reticulata
ENSGAGG00000022217	UPF1	100	91.247	ENSPPYG00000009752	UPF1	100	91.247	Pongo_abelii
ENSGAGG00000022217	UPF1	76	100.000	ENSPCAG00000012962	UPF1	76	100.000	Procavia_capensis
ENSGAGG00000022217	UPF1	100	96.886	ENSPCOG00000023813	UPF1	100	96.886	Propithecus_coquereli
ENSGAGG00000022217	UPF1	68	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSGAGG00000022217	UPF1	100	93.153	ENSPNYG00000016731	-	100	93.063	Pundamilia_nyererei
ENSGAGG00000022217	UPF1	100	90.861	ENSPNYG00000003694	upf1	100	91.882	Pundamilia_nyererei
ENSGAGG00000022217	UPF1	100	93.969	ENSPNAG00000025614	upf1	100	94.419	Pygocentrus_nattereri
ENSGAGG00000022217	UPF1	100	97.038	ENSRNOG00000020134	Upf1	100	97.038	Rattus_norvegicus
ENSGAGG00000022217	UPF1	96	94.398	ENSRBIG00000013894	UPF1	98	98.795	Rhinopithecus_bieti
ENSGAGG00000022217	UPF1	96	96.732	ENSRROG00000040935	UPF1	98	98.795	Rhinopithecus_roxellana
ENSGAGG00000022217	UPF1	75	55.778	YMR080C	NAM7	87	55.778	Saccharomyces_cerevisiae
ENSGAGG00000022217	UPF1	95	96.272	ENSSBOG00000023632	UPF1	98	96.272	Saimiri_boliviensis_boliviensis
ENSGAGG00000022217	UPF1	94	98.291	ENSSHAG00000010499	UPF1	100	98.291	Sarcophilus_harrisii
ENSGAGG00000022217	UPF1	100	96.126	ENSSFOG00015021095	upf1	99	97.507	Scleropages_formosus
ENSGAGG00000022217	UPF1	100	89.947	ENSSMAG00000005055	upf1	100	90.756	Scophthalmus_maximus
ENSGAGG00000022217	UPF1	100	93.069	ENSSMAG00000021018	-	100	93.069	Scophthalmus_maximus
ENSGAGG00000022217	UPF1	100	93.429	ENSSDUG00000009629	-	100	93.429	Seriola_dumerili
ENSGAGG00000022217	UPF1	100	91.030	ENSSDUG00000013320	upf1	100	91.741	Seriola_dumerili
ENSGAGG00000022217	UPF1	100	93.429	ENSSLDG00000006878	-	100	93.429	Seriola_lalandi_dorsalis
ENSGAGG00000022217	UPF1	100	91.846	ENSSLDG00000020868	upf1	100	92.308	Seriola_lalandi_dorsalis
ENSGAGG00000022217	UPF1	100	98.829	ENSSPUG00000010538	UPF1	100	98.829	Sphenodon_punctatus
ENSGAGG00000022217	UPF1	100	90.261	ENSSPAG00000000003	upf1	100	90.198	Stegastes_partitus
ENSGAGG00000022217	UPF1	100	93.237	ENSSPAG00000011521	-	100	93.147	Stegastes_partitus
ENSGAGG00000022217	UPF1	100	97.493	ENSSSCG00000039301	UPF1	99	98.848	Sus_scrofa
ENSGAGG00000022217	UPF1	83	90.532	ENSTGUG00000001057	UPF1	100	95.858	Taeniopygia_guttata
ENSGAGG00000022217	UPF1	100	92.335	ENSTRUG00000005131	-	100	92.155	Takifugu_rubripes
ENSGAGG00000022217	UPF1	100	91.877	ENSTRUG00000000150	upf1	100	91.787	Takifugu_rubripes
ENSGAGG00000022217	UPF1	100	93.465	ENSTTRG00000011544	UPF1	100	93.100	Tursiops_truncatus
ENSGAGG00000022217	UPF1	100	97.321	ENSUAMG00000007093	UPF1	100	97.321	Ursus_americanus
ENSGAGG00000022217	UPF1	96	97.830	ENSUMAG00000006652	UPF1	99	99.170	Ursus_maritimus
ENSGAGG00000022217	UPF1	100	97.321	ENSVVUG00000007797	UPF1	100	97.321	Vulpes_vulpes
ENSGAGG00000022217	UPF1	100	82.555	ENSXETG00000013602	upf1	100	82.203	Xenopus_tropicalis
ENSGAGG00000022217	UPF1	93	94.568	ENSXCOG00000005764	-	100	94.568	Xiphophorus_couchianus
ENSGAGG00000022217	UPF1	97	90.858	ENSXCOG00000015275	-	96	90.485	Xiphophorus_couchianus
ENSGAGG00000022217	UPF1	100	92.613	ENSXMAG00000002540	-	100	92.523	Xiphophorus_maculatus
ENSGAGG00000022217	UPF1	100	91.073	ENSXMAG00000001703	-	100	90.712	Xiphophorus_maculatus