EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGAGG00000022544 (Gene tree)
Gene ID: -
Gene Symbol: URB1
Alias: C21orf108|KIAA0539|NPA1
Full Name: URB1 ribosome biogenesis homolog
Gene Type: protein_coding
Species: Gopherus_agassizii
Status: putative
Strand: Plus strand
Length: 85318 bases
Position: chrPPEB01000991.1:233307-318624
Accession: 17344
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAGP00000031364	Npa1	PF11707.8	6.3e-92	1	1
ENSGAGP00000031367	Npa1	PF11707.8	6.3e-92	1	1
ENSGAGP00000031373	Npa1	PF11707.8	6.3e-92	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAGT00000035587	URB1-203	7693	-	ENSGAGP00000031373	2291 (aa)	-	-
ENSGAGT00000035578	URB1-201	7693	-	ENSGAGP00000031364	2291 (aa)	-	-
ENSGAGT00000035581	URB1-202	7693	-	ENSGAGP00000031367	2291 (aa)	-	-

Gene Model

Click here to download ENSGAGG00000022544's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAGG00000022544's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAGG00000022544	URB1	99	58.497	ENSG00000142207	URB1	99	58.566	Homo_sapiens
ENSGAGG00000022544	URB1	98	54.011	ENSAPOG00000020308	urb1	99	54.011	Acanthochromis_polyacanthus
ENSGAGG00000022544	URB1	99	57.640	ENSAMEG00000011998	URB1	99	57.771	Ailuropoda_melanoleuca
ENSGAGG00000022544	URB1	95	46.115	ENSACIG00000003248	urb1	97	46.232	Amphilophus_citrinellus
ENSGAGG00000022544	URB1	99	43.769	ENSAOCG00000010364	urb1	99	43.769	Amphiprion_ocellaris
ENSGAGG00000022544	URB1	97	55.428	ENSAPEG00000010758	urb1	99	55.428	Amphiprion_percula
ENSGAGG00000022544	URB1	99	45.960	ENSATEG00000011790	urb1	99	45.960	Anabas_testudineus
ENSGAGG00000022544	URB1	97	75.372	ENSAPLG00000012791	URB1	99	75.372	Anas_platyrhynchos
ENSGAGG00000022544	URB1	99	66.841	ENSACAG00000002817	URB1	99	66.841	Anolis_carolinensis
ENSGAGG00000022544	URB1	99	59.013	ENSANAG00000024617	URB1	99	58.803	Aotus_nancymaae
ENSGAGG00000022544	URB1	99	47.336	ENSACLG00000024865	urb1	99	47.084	Astatotilapia_calliptera
ENSGAGG00000022544	URB1	99	41.609	ENSAMXG00000012306	urb1	99	41.703	Astyanax_mexicanus
ENSGAGG00000022544	URB1	99	57.050	ENSBTAG00000012412	URB1	99	57.224	Bos_taurus
ENSGAGG00000022544	URB1	99	58.542	ENSCJAG00000009118	URB1	99	58.337	Callithrix_jacchus
ENSGAGG00000022544	URB1	99	59.026	ENSCAFG00000008892	URB1	99	59.026	Canis_familiaris
ENSGAGG00000022544	URB1	99	58.631	ENSCAFG00020025987	-	99	58.631	Canis_lupus_dingo
ENSGAGG00000022544	URB1	99	57.977	ENSCAFG00020025994	-	99	57.977	Canis_lupus_dingo
ENSGAGG00000022544	URB1	99	56.639	ENSCHIG00000015645	URB1	99	56.770	Capra_hircus
ENSGAGG00000022544	URB1	99	58.624	ENSTSYG00000013286	URB1	99	58.642	Carlito_syrichta
ENSGAGG00000022544	URB1	98	56.373	ENSCAPG00000015589	URB1	99	56.373	Cavia_aperea
ENSGAGG00000022544	URB1	99	56.975	ENSCPOG00000006748	URB1	99	56.975	Cavia_porcellus
ENSGAGG00000022544	URB1	99	58.777	ENSCCAG00000021299	URB1	99	58.829	Cebus_capucinus
ENSGAGG00000022544	URB1	99	58.410	ENSCATG00000042630	URB1	99	58.541	Cercocebus_atys
ENSGAGG00000022544	URB1	99	57.567	ENSCLAG00000005262	URB1	99	57.567	Chinchilla_lanigera
ENSGAGG00000022544	URB1	99	57.565	ENSCSAG00000009584	URB1	99	57.696	Chlorocebus_sabaeus
ENSGAGG00000022544	URB1	100	95.766	ENSCPBG00000006454	URB1	100	95.766	Chrysemys_picta_bellii
ENSGAGG00000022544	URB1	99	58.060	ENSCANG00000031088	URB1	99	58.191	Colobus_angolensis_palliatus
ENSGAGG00000022544	URB1	99	57.130	ENSCGRG00001010616	Urb1	99	57.024	Cricetulus_griseus_chok1gshd
ENSGAGG00000022544	URB1	98	57.264	ENSCGRG00000015840	Urb1	99	57.264	Cricetulus_griseus_crigri
ENSGAGG00000022544	URB1	99	45.368	ENSCSEG00000012616	urb1	99	45.411	Cynoglossus_semilaevis
ENSGAGG00000022544	URB1	92	57.727	ENSCVAG00000009076	urb1	99	57.727	Cyprinodon_variegatus
ENSGAGG00000022544	URB1	99	45.411	ENSDARG00000060308	urb1	99	45.672	Danio_rerio
ENSGAGG00000022544	URB1	85	61.790	ENSDNOG00000015586	URB1	99	62.097	Dasypus_novemcinctus
ENSGAGG00000022544	URB1	99	57.454	ENSDORG00000006735	Urb1	99	57.491	Dipodomys_ordii
ENSGAGG00000022544	URB1	91	63.375	ENSETEG00000009080	URB1	92	63.375	Echinops_telfairi
ENSGAGG00000022544	URB1	99	61.398	ENSEASG00005007711	URB1	98	61.398	Equus_asinus_asinus
ENSGAGG00000022544	URB1	97	67.873	ENSECAG00000013206	URB1	99	67.873	Equus_caballus
ENSGAGG00000022544	URB1	54	68.750	ENSEEUG00000003626	-	54	68.750	Erinaceus_europaeus
ENSGAGG00000022544	URB1	99	45.317	ENSELUG00000020516	urb1	99	45.537	Esox_lucius
ENSGAGG00000022544	URB1	99	57.984	ENSFCAG00000002177	URB1	99	58.159	Felis_catus
ENSGAGG00000022544	URB1	98	62.012	ENSFALG00000004636	URB1	99	62.012	Ficedula_albicollis
ENSGAGG00000022544	URB1	99	57.256	ENSFDAG00000007288	URB1	95	56.950	Fukomys_damarensis
ENSGAGG00000022544	URB1	99	43.104	ENSFHEG00000000202	urb1	99	44.389	Fundulus_heteroclitus
ENSGAGG00000022544	URB1	93	47.064	ENSGMOG00000001838	urb1	94	47.064	Gadus_morhua
ENSGAGG00000022544	URB1	100	74.586	ENSGALG00000015887	URB1	100	74.586	Gallus_gallus
ENSGAGG00000022544	URB1	94	54.346	ENSGAFG00000020694	urb1	98	54.450	Gambusia_affinis
ENSGAGG00000022544	URB1	99	47.454	ENSGACG00000011703	urb1	99	47.477	Gasterosteus_aculeatus
ENSGAGG00000022544	URB1	99	58.559	ENSGGOG00000000285	URB1	99	58.610	Gorilla_gorilla
ENSGAGG00000022544	URB1	99	47.315	ENSHBUG00000001904	urb1	99	47.064	Haplochromis_burtoni
ENSGAGG00000022544	URB1	99	56.664	ENSHGLG00000004907	URB1	99	56.664	Heterocephalus_glaber_female
ENSGAGG00000022544	URB1	99	57.093	ENSHGLG00100010749	URB1	99	57.093	Heterocephalus_glaber_male
ENSGAGG00000022544	URB1	71	55.056	ENSHCOG00000018683	urb1	97	55.056	Hippocampus_comes
ENSGAGG00000022544	URB1	99	41.935	ENSIPUG00000014721	urb1	99	41.892	Ictalurus_punctatus
ENSGAGG00000022544	URB1	99	58.043	ENSSTOG00000004539	URB1	99	57.771	Ictidomys_tridecemlineatus
ENSGAGG00000022544	URB1	93	50.423	ENSKMAG00000006001	urb1	99	50.423	Kryptolebias_marmoratus
ENSGAGG00000022544	URB1	95	44.460	ENSLBEG00000027208	urb1	98	44.460	Labrus_bergylta
ENSGAGG00000022544	URB1	99	55.198	ENSLACG00000017059	URB1	99	55.517	Latimeria_chalumnae
ENSGAGG00000022544	URB1	99	49.285	ENSLOCG00000009190	urb1	99	49.285	Lepisosteus_oculatus
ENSGAGG00000022544	URB1	99	59.170	ENSLAFG00000010407	URB1	99	59.170	Loxodonta_africana
ENSGAGG00000022544	URB1	99	58.482	ENSMFAG00000034391	URB1	96	58.603	Macaca_fascicularis
ENSGAGG00000022544	URB1	99	58.395	ENSMMUG00000010295	URB1	99	58.515	Macaca_mulatta
ENSGAGG00000022544	URB1	99	57.355	ENSMNEG00000032981	URB1	99	57.430	Macaca_nemestrina
ENSGAGG00000022544	URB1	99	58.570	ENSMLEG00000041435	URB1	99	58.690	Mandrillus_leucophaeus
ENSGAGG00000022544	URB1	99	45.211	ENSMAMG00000011238	urb1	98	45.211	Mastacembelus_armatus
ENSGAGG00000022544	URB1	99	43.425	ENSMZEG00005011862	urb1	99	43.221	Maylandia_zebra
ENSGAGG00000022544	URB1	98	75.078	ENSMGAG00000014512	URB1	100	75.078	Meleagris_gallopavo
ENSGAGG00000022544	URB1	92	60.926	ENSMAUG00000010516	Urb1	99	61.071	Mesocricetus_auratus
ENSGAGG00000022544	URB1	99	57.454	ENSMICG00000016424	URB1	99	57.498	Microcebus_murinus
ENSGAGG00000022544	URB1	99	55.352	ENSMOCG00000012613	Urb1	99	55.352	Microtus_ochrogaster
ENSGAGG00000022544	URB1	99	61.310	ENSMODG00000021076	URB1	99	61.310	Monodelphis_domestica
ENSGAGG00000022544	URB1	93	55.451	ENSMALG00000017411	urb1	96	55.451	Monopterus_albus
ENSGAGG00000022544	URB1	99	56.508	MGP_CAROLIEiJ_G0020948	Urb1	99	56.508	Mus_caroli
ENSGAGG00000022544	URB1	99	56.490	ENSMUSG00000039929	Urb1	99	56.490	Mus_musculus
ENSGAGG00000022544	URB1	99	56.340	MGP_PahariEiJ_G0016653	Urb1	99	56.340	Mus_pahari
ENSGAGG00000022544	URB1	99	56.228	MGP_SPRETEiJ_G0021854	Urb1	99	56.228	Mus_spretus
ENSGAGG00000022544	URB1	99	58.410	ENSMPUG00000001123	URB1	99	58.410	Mustela_putorius_furo
ENSGAGG00000022544	URB1	99	56.005	ENSNGAG00000001905	Urb1	99	56.005	Nannospalax_galili
ENSGAGG00000022544	URB1	82	47.577	ENSNBRG00000001049	urb1	99	47.577	Neolamprologus_brichardi
ENSGAGG00000022544	URB1	99	56.924	ENSNLEG00000026872	URB1	99	57.037	Nomascus_leucogenys
ENSGAGG00000022544	URB1	93	62.524	ENSMEUG00000010828	URB1	94	61.726	Notamacropus_eugenii
ENSGAGG00000022544	URB1	99	54.526	ENSOPRG00000013482	URB1	99	54.526	Ochotona_princeps
ENSGAGG00000022544	URB1	99	57.112	ENSODEG00000002587	URB1	99	57.112	Octodon_degus
ENSGAGG00000022544	URB1	99	47.281	ENSONIG00000005599	urb1	99	47.281	Oreochromis_niloticus
ENSGAGG00000022544	URB1	99	57.989	ENSOCUG00000009381	URB1	99	57.989	Oryctolagus_cuniculus
ENSGAGG00000022544	URB1	99	45.839	ENSORLG00000003429	urb1	99	45.839	Oryzias_latipes
ENSGAGG00000022544	URB1	99	45.585	ENSORLG00020013785	urb1	99	45.585	Oryzias_latipes_hni
ENSGAGG00000022544	URB1	97	53.804	ENSORLG00015019421	urb1	99	53.804	Oryzias_latipes_hsok
ENSGAGG00000022544	URB1	73	56.800	ENSOMEG00000002094	urb1	97	56.800	Oryzias_melastigma
ENSGAGG00000022544	URB1	99	57.998	ENSOGAG00000017140	URB1	99	58.035	Otolemur_garnettii
ENSGAGG00000022544	URB1	95	60.671	ENSOARG00000013679	URB1	99	60.151	Ovis_aries
ENSGAGG00000022544	URB1	99	58.646	ENSPPAG00000003423	URB1	99	58.698	Pan_paniscus
ENSGAGG00000022544	URB1	99	58.326	ENSPPRG00000023131	URB1	99	58.413	Panthera_pardus
ENSGAGG00000022544	URB1	91	58.934	ENSPTIG00000016125	URB1	97	59.033	Panthera_tigris_altaica
ENSGAGG00000022544	URB1	99	58.559	ENSPTRG00000013852	URB1	99	58.610	Pan_troglodytes
ENSGAGG00000022544	URB1	99	58.646	ENSPANG00000021964	URB1	99	58.672	Papio_anubis
ENSGAGG00000022544	URB1	99	48.145	ENSPKIG00000003683	urb1	97	48.055	Paramormyrops_kingsleyae
ENSGAGG00000022544	URB1	99	56.539	ENSPEMG00000021205	Urb1	99	56.539	Peromyscus_maniculatus_bairdii
ENSGAGG00000022544	URB1	80	32.617	ENSPMAG00000009733	URB1	99	33.896	Petromyzon_marinus
ENSGAGG00000022544	URB1	99	61.283	ENSPCIG00000016350	URB1	99	61.732	Phascolarctos_cinereus
ENSGAGG00000022544	URB1	97	45.406	ENSPLAG00000004371	urb1	99	45.406	Poecilia_latipinna
ENSGAGG00000022544	URB1	99	45.826	ENSPMEG00000006634	urb1	99	45.826	Poecilia_mexicana
ENSGAGG00000022544	URB1	99	46.137	ENSPREG00000013453	urb1	99	46.137	Poecilia_reticulata
ENSGAGG00000022544	URB1	99	58.399	ENSPPYG00000011359	URB1	99	58.417	Pongo_abelii
ENSGAGG00000022544	URB1	99	50.479	ENSPCAG00000007430	URB1	99	50.479	Procavia_capensis
ENSGAGG00000022544	URB1	99	58.028	ENSPCOG00000022695	URB1	99	58.115	Propithecus_coquereli
ENSGAGG00000022544	URB1	99	56.531	ENSPVAG00000000889	URB1	99	56.531	Pteropus_vampyrus
ENSGAGG00000022544	URB1	99	46.198	ENSPNYG00000010589	urb1	99	45.960	Pundamilia_nyererei
ENSGAGG00000022544	URB1	99	43.148	ENSPNAG00000019324	urb1	99	43.278	Pygocentrus_nattereri
ENSGAGG00000022544	URB1	99	56.465	ENSRNOG00000002080	Urb1	99	56.596	Rattus_norvegicus
ENSGAGG00000022544	URB1	99	57.842	ENSRBIG00000033122	URB1	99	58.017	Rhinopithecus_bieti
ENSGAGG00000022544	URB1	99	57.842	ENSRROG00000040237	URB1	99	58.017	Rhinopithecus_roxellana
ENSGAGG00000022544	URB1	99	58.969	ENSSBOG00000027672	URB1	99	58.759	Saimiri_boliviensis_boliviensis
ENSGAGG00000022544	URB1	99	60.951	ENSSHAG00000005140	URB1	100	60.951	Sarcophilus_harrisii
ENSGAGG00000022544	URB1	92	49.293	ENSSFOG00015000339	urb1	99	49.434	Scleropages_formosus
ENSGAGG00000022544	URB1	99	47.187	ENSSMAG00000003782	urb1	99	47.364	Scophthalmus_maximus
ENSGAGG00000022544	URB1	99	48.066	ENSSDUG00000012313	urb1	99	48.066	Seriola_dumerili
ENSGAGG00000022544	URB1	99	47.958	ENSSLDG00000023179	urb1	99	47.958	Seriola_lalandi_dorsalis
ENSGAGG00000022544	URB1	99	74.793	ENSSPUG00000012447	URB1	99	74.880	Sphenodon_punctatus
ENSGAGG00000022544	URB1	99	47.051	ENSSPAG00000006325	urb1	99	47.051	Stegastes_partitus
ENSGAGG00000022544	URB1	99	57.024	ENSSSCG00000032024	URB1	99	57.024	Sus_scrofa
ENSGAGG00000022544	URB1	73	72.652	ENSTGUG00000013442	URB1	100	72.652	Taeniopygia_guttata
ENSGAGG00000022544	URB1	99	45.390	ENSTRUG00000009372	urb1	99	45.390	Takifugu_rubripes
ENSGAGG00000022544	URB1	99	45.307	ENSTNIG00000016277	urb1	99	45.307	Tetraodon_nigroviridis
ENSGAGG00000022544	URB1	80	65.418	ENSTBEG00000010044	URB1	80	65.418	Tupaia_belangeri
ENSGAGG00000022544	URB1	91	62.293	ENSTTRG00000007712	URB1	92	62.707	Tursiops_truncatus
ENSGAGG00000022544	URB1	99	57.815	ENSUAMG00000012231	URB1	99	57.815	Ursus_americanus
ENSGAGG00000022544	URB1	95	57.811	ENSUMAG00000017419	URB1	97	59.644	Ursus_maritimus
ENSGAGG00000022544	URB1	68	71.918	ENSVPAG00000001164	URB1	68	71.918	Vicugna_pacos
ENSGAGG00000022544	URB1	99	58.762	ENSVVUG00000000551	URB1	99	58.762	Vulpes_vulpes
ENSGAGG00000022544	URB1	99	57.500	ENSXETG00000009895	urb1	99	57.543	Xenopus_tropicalis
ENSGAGG00000022544	URB1	99	43.310	ENSXCOG00000005500	urb1	98	48.076	Xiphophorus_couchianus
ENSGAGG00000022544	URB1	99	43.769	ENSXMAG00000007253	urb1	98	48.511	Xiphophorus_maculatus