EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGAGG00000022572 (Gene tree)
Gene ID: -
Gene Symbol: USB1
Alias: C16orf57|FLJ13154|HVSL1|Mpn1
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Gopherus_agassizii
Status: putative
Strand: Plus strand
Length: 9314 bases
Position: chrPPEB01002279.1:88924-98237
Accession: 25792
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAGP00000031419	HVSL	PF09749.9	8.1e-65	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAGT00000035635	USB1-201	2412	-	ENSGAGP00000031419	273 (aa)	-	-

Gene Model

Click here to download ENSGAGG00000022572's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAGG00000022572's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAGG00000022572	USB1	100	61.538	ENSG00000103005	USB1	100	65.888	Homo_sapiens
ENSGAGG00000022572	USB1	98	51.079	ENSAPOG00000011942	usb1	99	51.079	Acanthochromis_polyacanthus
ENSGAGG00000022572	USB1	100	61.538	ENSAMEG00000017205	USB1	100	62.681	Ailuropoda_melanoleuca
ENSGAGG00000022572	USB1	82	56.054	ENSACIG00000012234	usb1	99	51.673	Amphilophus_citrinellus
ENSGAGG00000022572	USB1	98	51.418	ENSAOCG00000014831	usb1	99	52.128	Amphiprion_ocellaris
ENSGAGG00000022572	USB1	98	51.773	ENSAPEG00000000296	usb1	99	52.482	Amphiprion_percula
ENSGAGG00000022572	USB1	98	52.143	ENSATEG00000009348	usb1	99	52.143	Anabas_testudineus
ENSGAGG00000022572	USB1	82	80.088	ENSAPLG00000002756	USB1	100	80.088	Anas_platyrhynchos
ENSGAGG00000022572	USB1	83	65.939	ENSACAG00000015481	USB1	100	65.939	Anolis_carolinensis
ENSGAGG00000022572	USB1	100	62.271	ENSANAG00000035640	USB1	100	62.909	Aotus_nancymaae
ENSGAGG00000022572	USB1	82	54.709	ENSACLG00000020586	usb1	99	50.000	Astatotilapia_calliptera
ENSGAGG00000022572	USB1	82	56.054	ENSAMXG00000040146	usb1	95	48.264	Astyanax_mexicanus
ENSGAGG00000022572	USB1	100	63.869	ENSBTAG00000015758	USB1	100	63.869	Bos_taurus
ENSGAGG00000022572	USB1	100	61.905	ENSCJAG00000011733	USB1	100	63.636	Callithrix_jacchus
ENSGAGG00000022572	USB1	99	63.971	ENSCAFG00000008556	USB1	73	65.568	Canis_familiaris
ENSGAGG00000022572	USB1	99	63.370	ENSCAFG00020009263	USB1	99	63.370	Canis_lupus_dingo
ENSGAGG00000022572	USB1	100	63.139	ENSCHIG00000024290	USB1	100	63.139	Capra_hircus
ENSGAGG00000022572	USB1	100	61.538	ENSTSYG00000006997	USB1	100	62.774	Carlito_syrichta
ENSGAGG00000022572	USB1	85	54.310	ENSCAPG00000009057	USB1	100	54.310	Cavia_aperea
ENSGAGG00000022572	USB1	100	62.271	ENSCPOG00000014325	USB1	100	62.271	Cavia_porcellus
ENSGAGG00000022572	USB1	100	62.271	ENSCCAG00000022132	USB1	100	62.909	Cebus_capucinus
ENSGAGG00000022572	USB1	100	63.004	ENSCATG00000032174	USB1	100	64.234	Cercocebus_atys
ENSGAGG00000022572	USB1	64	66.092	ENSCLAG00000007363	USB1	91	68.944	Chinchilla_lanigera
ENSGAGG00000022572	USB1	100	62.637	ENSCSAG00000004783	USB1	100	63.869	Chlorocebus_sabaeus
ENSGAGG00000022572	USB1	100	91.007	ENSCPBG00000026943	USB1	100	91.727	Chrysemys_picta_bellii
ENSGAGG00000022572	USB1	81	30.396	ENSCSAVG00000000894	-	82	30.396	Ciona_savignyi
ENSGAGG00000022572	USB1	88	65.975	ENSCANG00000037135	USB1	100	63.869	Colobus_angolensis_palliatus
ENSGAGG00000022572	USB1	100	64.103	ENSCGRG00001011243	USB1	100	64.103	Cricetulus_griseus_chok1gshd
ENSGAGG00000022572	USB1	100	64.103	ENSCGRG00000013252	USB1	100	64.103	Cricetulus_griseus_crigri
ENSGAGG00000022572	USB1	98	50.916	ENSCSEG00000013881	usb1	99	50.916	Cynoglossus_semilaevis
ENSGAGG00000022572	USB1	82	53.509	ENSCVAG00000009252	usb1	97	53.509	Cyprinodon_variegatus
ENSGAGG00000022572	USB1	89	50.813	ENSDARG00000003841	usb1	99	49.818	Danio_rerio
ENSGAGG00000022572	USB1	100	61.538	ENSDORG00000001888	Usb1	100	61.538	Dipodomys_ordii
ENSGAGG00000022572	USB1	85	36.515	FBgn0037713	CG16790	98	34.483	Drosophila_melanogaster
ENSGAGG00000022572	USB1	100	53.791	ENSETEG00000019682	USB1	100	53.791	Echinops_telfairi
ENSGAGG00000022572	USB1	81	48.198	ENSEBUG00000005889	usb1	78	48.198	Eptatretus_burgeri
ENSGAGG00000022572	USB1	100	63.869	ENSEASG00005005484	USB1	100	63.869	Equus_asinus_asinus
ENSGAGG00000022572	USB1	99	64.835	ENSECAG00000019493	USB1	91	64.835	Equus_caballus
ENSGAGG00000022572	USB1	64	60.345	ENSEEUG00000000154	USB1	61	61.491	Erinaceus_europaeus
ENSGAGG00000022572	USB1	83	51.316	ENSELUG00000010974	usb1	99	47.426	Esox_lucius
ENSGAGG00000022572	USB1	100	61.538	ENSFCAG00000002693	USB1	100	61.538	Felis_catus
ENSGAGG00000022572	USB1	85	72.103	ENSFALG00000006876	USB1	99	67.037	Ficedula_albicollis
ENSGAGG00000022572	USB1	100	62.409	ENSFDAG00000010052	USB1	100	62.409	Fukomys_damarensis
ENSGAGG00000022572	USB1	86	51.653	ENSFHEG00000012334	usb1	96	52.479	Fundulus_heteroclitus
ENSGAGG00000022572	USB1	82	55.605	ENSGMOG00000004228	usb1	99	55.605	Gadus_morhua
ENSGAGG00000022572	USB1	82	75.893	ENSGALG00000035604	USB1	99	68.635	Gallus_gallus
ENSGAGG00000022572	USB1	98	53.455	ENSGAFG00000021890	usb1	99	53.455	Gambusia_affinis
ENSGAGG00000022572	USB1	82	54.260	ENSGACG00000003257	usb1	99	49.819	Gasterosteus_aculeatus
ENSGAGG00000022572	USB1	100	61.538	ENSGGOG00000017147	USB1	100	62.182	Gorilla_gorilla
ENSGAGG00000022572	USB1	90	52.033	ENSHBUG00000009823	usb1	99	50.538	Haplochromis_burtoni
ENSGAGG00000022572	USB1	99	64.103	ENSHGLG00000016078	USB1	97	64.103	Heterocephalus_glaber_female
ENSGAGG00000022572	USB1	99	64.103	ENSHGLG00100005562	USB1	97	64.103	Heterocephalus_glaber_male
ENSGAGG00000022572	USB1	79	53.704	ENSHCOG00000015633	usb1	99	49.438	Hippocampus_comes
ENSGAGG00000022572	USB1	98	49.826	ENSIPUG00000008601	usb1	99	49.826	Ictalurus_punctatus
ENSGAGG00000022572	USB1	100	63.370	ENSSTOG00000007548	USB1	100	63.370	Ictidomys_tridecemlineatus
ENSGAGG00000022572	USB1	100	63.504	ENSJJAG00000021859	Usb1	100	63.504	Jaculus_jaculus
ENSGAGG00000022572	USB1	93	51.373	ENSKMAG00000007200	usb1	98	50.896	Kryptolebias_marmoratus
ENSGAGG00000022572	USB1	80	51.364	ENSLBEG00000008452	usb1	85	45.556	Labrus_bergylta
ENSGAGG00000022572	USB1	83	61.304	ENSLACG00000000105	USB1	87	60.079	Latimeria_chalumnae
ENSGAGG00000022572	USB1	93	54.864	ENSLOCG00000000465	usb1	99	53.169	Lepisosteus_oculatus
ENSGAGG00000022572	USB1	100	55.678	ENSLAFG00000002267	USB1	100	55.957	Loxodonta_africana
ENSGAGG00000022572	USB1	100	62.637	ENSMFAG00000003926	USB1	100	63.504	Macaca_fascicularis
ENSGAGG00000022572	USB1	100	62.637	ENSMMUG00000022669	USB1	100	63.504	Macaca_mulatta
ENSGAGG00000022572	USB1	100	62.271	ENSMNEG00000042487	USB1	100	63.139	Macaca_nemestrina
ENSGAGG00000022572	USB1	100	62.637	ENSMLEG00000028756	USB1	100	63.504	Mandrillus_leucophaeus
ENSGAGG00000022572	USB1	98	52.536	ENSMAMG00000015092	usb1	99	52.536	Mastacembelus_armatus
ENSGAGG00000022572	USB1	82	54.709	ENSMZEG00005010008	usb1	99	50.179	Maylandia_zebra
ENSGAGG00000022572	USB1	100	64.234	ENSMAUG00000007832	Usb1	100	64.234	Mesocricetus_auratus
ENSGAGG00000022572	USB1	100	60.440	ENSMICG00000004900	USB1	100	63.504	Microcebus_murinus
ENSGAGG00000022572	USB1	100	63.504	ENSMOCG00000022647	Usb1	100	63.504	Microtus_ochrogaster
ENSGAGG00000022572	USB1	82	55.357	ENSMMOG00000000490	usb1	99	51.493	Mola_mola
ENSGAGG00000022572	USB1	100	62.816	ENSMODG00000014067	USB1	100	62.816	Monodelphis_domestica
ENSGAGG00000022572	USB1	90	53.629	ENSMALG00000005930	usb1	99	52.500	Monopterus_albus
ENSGAGG00000022572	USB1	100	62.774	MGP_CAROLIEiJ_G0031421	Usb1	100	62.774	Mus_caroli
ENSGAGG00000022572	USB1	100	62.774	ENSMUSG00000031792	Usb1	100	62.774	Mus_musculus
ENSGAGG00000022572	USB1	100	60.440	MGP_PahariEiJ_G0023019	Usb1	100	62.774	Mus_pahari
ENSGAGG00000022572	USB1	100	62.774	MGP_SPRETEiJ_G0032540	Usb1	100	62.774	Mus_spretus
ENSGAGG00000022572	USB1	100	61.172	ENSMPUG00000004684	USB1	96	61.172	Mustela_putorius_furo
ENSGAGG00000022572	USB1	85	66.234	ENSMLUG00000007400	USB1	100	66.234	Myotis_lucifugus
ENSGAGG00000022572	USB1	100	61.905	ENSNGAG00000009703	Usb1	100	64.234	Nannospalax_galili
ENSGAGG00000022572	USB1	90	49.593	ENSNBRG00000008747	usb1	99	53.991	Neolamprologus_brichardi
ENSGAGG00000022572	USB1	95	61.240	ENSNLEG00000003340	USB1	100	61.923	Nomascus_leucogenys
ENSGAGG00000022572	USB1	57	53.797	ENSMEUG00000003328	-	99	53.086	Notamacropus_eugenii
ENSGAGG00000022572	USB1	62	64.706	ENSOPRG00000011803	USB1	72	64.706	Ochotona_princeps
ENSGAGG00000022572	USB1	100	63.504	ENSODEG00000016214	USB1	100	63.504	Octodon_degus
ENSGAGG00000022572	USB1	98	51.079	ENSONIG00000011063	usb1	99	51.079	Oreochromis_niloticus
ENSGAGG00000022572	USB1	82	70.354	ENSOANG00000012118	USB1	95	70.354	Ornithorhynchus_anatinus
ENSGAGG00000022572	USB1	82	56.054	ENSORLG00000012479	usb1	99	50.370	Oryzias_latipes
ENSGAGG00000022572	USB1	82	56.054	ENSORLG00020018671	usb1	99	51.661	Oryzias_latipes_hni
ENSGAGG00000022572	USB1	82	56.054	ENSORLG00015009679	usb1	99	51.852	Oryzias_latipes_hsok
ENSGAGG00000022572	USB1	93	50.198	ENSOMEG00000012930	usb1	99	50.730	Oryzias_melastigma
ENSGAGG00000022572	USB1	100	58.242	ENSOGAG00000003273	USB1	100	59.489	Otolemur_garnettii
ENSGAGG00000022572	USB1	88	64.583	ENSOARG00000001107	USB1	92	64.583	Ovis_aries
ENSGAGG00000022572	USB1	100	61.538	ENSPPAG00000042137	USB1	100	62.182	Pan_paniscus
ENSGAGG00000022572	USB1	100	60.806	ENSPPRG00000024797	USB1	100	60.806	Panthera_pardus
ENSGAGG00000022572	USB1	100	60.806	ENSPTIG00000007506	USB1	100	60.806	Panthera_tigris_altaica
ENSGAGG00000022572	USB1	100	56.777	ENSPTRG00000008172	USB1	100	66.355	Pan_troglodytes
ENSGAGG00000022572	USB1	100	62.637	ENSPANG00000025138	USB1	100	63.504	Papio_anubis
ENSGAGG00000022572	USB1	82	58.482	ENSPKIG00000015109	usb1	99	49.492	Paramormyrops_kingsleyae
ENSGAGG00000022572	USB1	82	68.067	ENSPSIG00000004305	USB1	100	67.932	Pelodiscus_sinensis
ENSGAGG00000022572	USB1	82	53.363	ENSPMGG00000017725	usb1	98	49.254	Periophthalmus_magnuspinnatus
ENSGAGG00000022572	USB1	100	62.044	ENSPEMG00000016183	Usb1	100	62.816	Peromyscus_maniculatus_bairdii
ENSGAGG00000022572	USB1	82	52.212	ENSPMAG00000000462	usb1	95	52.212	Petromyzon_marinus
ENSGAGG00000022572	USB1	98	52.536	ENSPFOG00000011130	usb1	99	52.536	Poecilia_formosa
ENSGAGG00000022572	USB1	98	52.174	ENSPLAG00000009820	usb1	99	52.174	Poecilia_latipinna
ENSGAGG00000022572	USB1	98	52.878	ENSPMEG00000006402	usb1	99	52.878	Poecilia_mexicana
ENSGAGG00000022572	USB1	86	53.279	ENSPREG00000001047	usb1	98	53.279	Poecilia_reticulata
ENSGAGG00000022572	USB1	95	59.231	ENSPPYG00000007401	USB1	100	59.924	Pongo_abelii
ENSGAGG00000022572	USB1	100	60.806	ENSPCOG00000022612	USB1	100	63.139	Propithecus_coquereli
ENSGAGG00000022572	USB1	100	60.584	ENSPVAG00000004613	USB1	100	60.584	Pteropus_vampyrus
ENSGAGG00000022572	USB1	90	52.033	ENSPNYG00000022262	usb1	99	50.896	Pundamilia_nyererei
ENSGAGG00000022572	USB1	95	53.077	ENSPNAG00000011736	usb1	99	49.147	Pygocentrus_nattereri
ENSGAGG00000022572	USB1	100	62.774	ENSRNOG00000013216	Usb1	100	62.774	Rattus_norvegicus
ENSGAGG00000022572	USB1	100	57.509	ENSRBIG00000044466	USB1	100	67.290	Rhinopithecus_bieti
ENSGAGG00000022572	USB1	100	62.271	ENSRROG00000029211	USB1	100	64.234	Rhinopithecus_roxellana
ENSGAGG00000022572	USB1	100	62.637	ENSSBOG00000029362	USB1	100	63.273	Saimiri_boliviensis_boliviensis
ENSGAGG00000022572	USB1	80	64.840	ENSSHAG00000006993	USB1	98	62.348	Sarcophilus_harrisii
ENSGAGG00000022572	USB1	84	57.895	ENSSFOG00015023663	usb1	91	51.546	Scleropages_formosus
ENSGAGG00000022572	USB1	98	50.171	ENSSMAG00000015834	usb1	99	50.853	Scophthalmus_maximus
ENSGAGG00000022572	USB1	82	59.193	ENSSDUG00000002949	usb1	99	55.515	Seriola_dumerili
ENSGAGG00000022572	USB1	82	59.193	ENSSLDG00000014174	usb1	99	53.237	Seriola_lalandi_dorsalis
ENSGAGG00000022572	USB1	78	76.636	ENSSPUG00000006741	USB1	100	76.636	Sphenodon_punctatus
ENSGAGG00000022572	USB1	98	51.773	ENSSPAG00000007484	usb1	99	52.128	Stegastes_partitus
ENSGAGG00000022572	USB1	100	63.736	ENSSSCG00000002807	USB1	100	63.736	Sus_scrofa
ENSGAGG00000022572	USB1	77	77.512	ENSTGUG00000004792	USB1	99	65.926	Taeniopygia_guttata
ENSGAGG00000022572	USB1	98	50.000	ENSTRUG00000021069	usb1	99	50.000	Takifugu_rubripes
ENSGAGG00000022572	USB1	98	45.149	ENSTNIG00000000626	usb1	98	45.149	Tetraodon_nigroviridis
ENSGAGG00000022572	USB1	82	49.107	ENSTBEG00000001507	USB1	97	49.107	Tupaia_belangeri
ENSGAGG00000022572	USB1	100	61.905	ENSUAMG00000016823	USB1	100	62.637	Ursus_americanus
ENSGAGG00000022572	USB1	78	66.355	ENSUMAG00000021369	USB1	100	66.355	Ursus_maritimus
ENSGAGG00000022572	USB1	99	64.835	ENSVVUG00000023700	USB1	92	65.690	Vulpes_vulpes
ENSGAGG00000022572	USB1	79	60.092	ENSXETG00000013795	usb1	99	54.478	Xenopus_tropicalis
ENSGAGG00000022572	USB1	90	53.846	ENSXMAG00000024687	usb1	80	52.768	Xiphophorus_maculatus