EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGAGG00000023303 (Gene tree)
Gene ID: -
Gene Symbol: TRMT13
Alias: CCDC76|FLJ10287|FLJ11219
Full Name: tRNA methyltransferase 13 homolog
Gene Type: protein_coding
Species: Gopherus_agassizii
Status: putative
Strand: Plus strand
Length: 13532 bases
Position: chrPPEB01004984.1:59332-72863
Accession: 25502
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAGP00000032579	TRM13	PF05206.14	1.9e-92	1	1
ENSGAGP00000032580	TRM13	PF05206.14	7.6e-38	1	1
ENSGAGP00000032580	zf-U11-48K	PF05253.12	2.6e-11	1	1
ENSGAGP00000032579	zf-U11-48K	PF05253.12	5.7e-11	1	1
ENSGAGP00000032580	zf-TRM13_CCCH	PF11722.8	1.2e-12	1	1
ENSGAGP00000032579	zf-TRM13_CCCH	PF11722.8	5.1e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAGT00000036930	TRMT13-202	1587	-	ENSGAGP00000032580	275 (aa)	-	-
ENSGAGT00000036929	TRMT13-201	2823	-	ENSGAGP00000032579	479 (aa)	-	-

Gene Model

Click here to download ENSGAGG00000023303's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAGG00000023303's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAGG00000023303	TRMT13	95	75.573	ENSG00000122435	TRMT13	97	70.362	Homo_sapiens
ENSGAGG00000023303	TRMT13	96	55.102	ENSAPOG00000015131	trmt13	99	49.899	Acanthochromis_polyacanthus
ENSGAGG00000023303	TRMT13	99	74.182	ENSAMEG00000008917	TRMT13	100	70.124	Ailuropoda_melanoleuca
ENSGAGG00000023303	TRMT13	97	58.029	ENSACIG00000005804	trmt13	97	51.452	Amphilophus_citrinellus
ENSGAGG00000023303	TRMT13	96	54.333	ENSAOCG00000023585	trmt13	99	49.402	Amphiprion_ocellaris
ENSGAGG00000023303	TRMT13	96	54.333	ENSAPEG00000004025	trmt13	99	49.600	Amphiprion_percula
ENSGAGG00000023303	TRMT13	95	61.132	ENSATEG00000006597	trmt13	96	53.763	Anabas_testudineus
ENSGAGG00000023303	TRMT13	82	85.333	ENSAPLG00000014924	TRMT13	100	75.638	Anas_platyrhynchos
ENSGAGG00000023303	TRMT13	99	77.007	ENSACAG00000003498	TRMT13	100	71.882	Anolis_carolinensis
ENSGAGG00000023303	TRMT13	99	73.091	ENSANAG00000019525	TRMT13	100	69.295	Aotus_nancymaae
ENSGAGG00000023303	TRMT13	96	60.886	ENSACLG00000020018	trmt13	99	53.715	Astatotilapia_calliptera
ENSGAGG00000023303	TRMT13	96	63.534	ENSAMXG00000017963	trmt13	98	55.626	Astyanax_mexicanus
ENSGAGG00000023303	TRMT13	99	74.909	ENSBTAG00000015781	TRMT13	100	70.124	Bos_taurus
ENSGAGG00000023303	TRMT13	92	30.798	WBGene00013026	Y49A3A.3	64	30.798	Caenorhabditis_elegans
ENSGAGG00000023303	TRMT13	99	71.636	ENSCJAG00000000200	TRMT13	89	79.389	Callithrix_jacchus
ENSGAGG00000023303	TRMT13	65	70.382	ENSCAFG00000020021	TRMT13	99	70.382	Canis_familiaris
ENSGAGG00000023303	TRMT13	99	75.368	ENSCAFG00020011572	TRMT13	95	74.818	Canis_lupus_dingo
ENSGAGG00000023303	TRMT13	99	75.636	ENSCHIG00000015395	TRMT13	100	70.539	Capra_hircus
ENSGAGG00000023303	TRMT13	95	73.764	ENSTSYG00000010811	TRMT13	90	76.923	Carlito_syrichta
ENSGAGG00000023303	TRMT13	75	55.801	ENSCAPG00000009085	TRMT13	95	57.184	Cavia_aperea
ENSGAGG00000023303	TRMT13	99	73.455	ENSCPOG00000000694	TRMT13	100	69.647	Cavia_porcellus
ENSGAGG00000023303	TRMT13	99	73.455	ENSCCAG00000023772	TRMT13	100	69.502	Cebus_capucinus
ENSGAGG00000023303	TRMT13	99	72.727	ENSCATG00000033556	TRMT13	100	68.672	Cercocebus_atys
ENSGAGG00000023303	TRMT13	89	68.075	ENSCLAG00000008220	TRMT13	100	67.681	Chinchilla_lanigera
ENSGAGG00000023303	TRMT13	99	73.455	ENSCSAG00000001506	TRMT13	100	69.295	Chlorocebus_sabaeus
ENSGAGG00000023303	TRMT13	100	96.868	ENSCPBG00000026671	TRMT13	100	96.868	Chrysemys_picta_bellii
ENSGAGG00000023303	TRMT13	99	73.091	ENSCANG00000034659	TRMT13	100	69.087	Colobus_angolensis_palliatus
ENSGAGG00000023303	TRMT13	98	71.587	ENSCGRG00001021601	Trmt13	99	67.715	Cricetulus_griseus_chok1gshd
ENSGAGG00000023303	TRMT13	53	64.591	ENSCGRG00000000093	-	99	64.591	Cricetulus_griseus_crigri
ENSGAGG00000023303	TRMT13	97	57.090	ENSCSEG00000000591	trmt13	99	50.108	Cynoglossus_semilaevis
ENSGAGG00000023303	TRMT13	99	55.017	ENSCVAG00000017342	trmt13	96	51.646	Cyprinodon_variegatus
ENSGAGG00000023303	TRMT13	95	67.176	ENSDARG00000102846	trmt13	96	59.259	Danio_rerio
ENSGAGG00000023303	TRMT13	94	74.242	ENSDNOG00000001710	TRMT13	80	74.242	Dasypus_novemcinctus
ENSGAGG00000023303	TRMT13	99	72.000	ENSDORG00000015808	Trmt13	99	68.465	Dipodomys_ordii
ENSGAGG00000023303	TRMT13	95	37.276	FBgn0037435	CG18048	96	34.719	Drosophila_melanogaster
ENSGAGG00000023303	TRMT13	96	60.385	ENSETEG00000005819	TRMT13	96	60.385	Echinops_telfairi
ENSGAGG00000023303	TRMT13	93	54.615	ENSEBUG00000014444	trmt13	96	48.812	Eptatretus_burgeri
ENSGAGG00000023303	TRMT13	99	74.909	ENSEASG00005015918	TRMT13	100	70.747	Equus_asinus_asinus
ENSGAGG00000023303	TRMT13	99	74.909	ENSECAG00000022626	TRMT13	100	70.747	Equus_caballus
ENSGAGG00000023303	TRMT13	89	72.470	ENSEEUG00000000294	TRMT13	79	65.079	Erinaceus_europaeus
ENSGAGG00000023303	TRMT13	97	61.481	ENSELUG00000003803	trmt13	99	53.684	Esox_lucius
ENSGAGG00000023303	TRMT13	99	74.909	ENSFCAG00000030618	TRMT13	100	70.747	Felis_catus
ENSGAGG00000023303	TRMT13	94	85.328	ENSFALG00000002424	TRMT13	99	75.052	Ficedula_albicollis
ENSGAGG00000023303	TRMT13	99	73.091	ENSFDAG00000006342	TRMT13	98	70.168	Fukomys_damarensis
ENSGAGG00000023303	TRMT13	96	60.075	ENSFHEG00000022954	trmt13	98	53.846	Fundulus_heteroclitus
ENSGAGG00000023303	TRMT13	94	58.527	ENSGMOG00000013223	trmt13	100	49.672	Gadus_morhua
ENSGAGG00000023303	TRMT13	93	84.047	ENSGALG00000005290	TRMT13	99	75.579	Gallus_gallus
ENSGAGG00000023303	TRMT13	96	55.755	ENSGAFG00000001577	trmt13	83	51.493	Gambusia_affinis
ENSGAGG00000023303	TRMT13	97	59.341	ENSGACG00000013428	trmt13	98	53.305	Gasterosteus_aculeatus
ENSGAGG00000023303	TRMT13	95	75.954	ENSGGOG00000005616	TRMT13	97	70.362	Gorilla_gorilla
ENSGAGG00000023303	TRMT13	96	60.886	ENSHBUG00000007754	trmt13	99	53.715	Haplochromis_burtoni
ENSGAGG00000023303	TRMT13	99	72.364	ENSHGLG00000002164	TRMT13	98	70.168	Heterocephalus_glaber_female
ENSGAGG00000023303	TRMT13	99	72.364	ENSHGLG00100001618	TRMT13	98	70.168	Heterocephalus_glaber_male
ENSGAGG00000023303	TRMT13	94	55.344	ENSHCOG00000020553	trmt13	97	48.373	Hippocampus_comes
ENSGAGG00000023303	TRMT13	97	63.806	ENSIPUG00000024787	trmt13	99	56.034	Ictalurus_punctatus
ENSGAGG00000023303	TRMT13	95	75.573	ENSSTOG00000013483	TRMT13	97	71.642	Ictidomys_tridecemlineatus
ENSGAGG00000023303	TRMT13	95	74.046	ENSJJAG00000018012	Trmt13	98	68.230	Jaculus_jaculus
ENSGAGG00000023303	TRMT13	67	49.394	ENSKMAG00000007639	trmt13	97	49.375	Kryptolebias_marmoratus
ENSGAGG00000023303	TRMT13	96	57.609	ENSLBEG00000020238	trmt13	100	51.891	Labrus_bergylta
ENSGAGG00000023303	TRMT13	97	73.134	ENSLACG00000013153	TRMT13	100	63.682	Latimeria_chalumnae
ENSGAGG00000023303	TRMT13	96	67.547	ENSLOCG00000000418	trmt13	98	58.747	Lepisosteus_oculatus
ENSGAGG00000023303	TRMT13	77	69.459	ENSLAFG00000002383	TRMT13	100	69.459	Loxodonta_africana
ENSGAGG00000023303	TRMT13	99	73.091	ENSMFAG00000034681	TRMT13	100	68.880	Macaca_fascicularis
ENSGAGG00000023303	TRMT13	99	73.091	ENSMMUG00000004243	TRMT13	100	68.880	Macaca_mulatta
ENSGAGG00000023303	TRMT13	99	73.091	ENSMNEG00000036102	TRMT13	100	68.880	Macaca_nemestrina
ENSGAGG00000023303	TRMT13	99	72.727	ENSMLEG00000034258	TRMT13	100	68.672	Mandrillus_leucophaeus
ENSGAGG00000023303	TRMT13	97	60.073	ENSMAMG00000016597	trmt13	99	53.347	Mastacembelus_armatus
ENSGAGG00000023303	TRMT13	96	60.517	ENSMZEG00005020959	trmt13	99	53.503	Maylandia_zebra
ENSGAGG00000023303	TRMT13	83	85.903	ENSMGAG00000006970	TRMT13	100	77.700	Meleagris_gallopavo
ENSGAGG00000023303	TRMT13	99	73.993	ENSMAUG00000010448	Trmt13	99	68.894	Mesocricetus_auratus
ENSGAGG00000023303	TRMT13	99	73.455	ENSMICG00000005283	TRMT13	100	69.917	Microcebus_murinus
ENSGAGG00000023303	TRMT13	99	72.894	ENSMOCG00000019914	Trmt13	99	67.500	Microtus_ochrogaster
ENSGAGG00000023303	TRMT13	96	50.558	ENSMMOG00000007762	trmt13	91	50.558	Mola_mola
ENSGAGG00000023303	TRMT13	99	74.194	ENSMODG00000003646	TRMT13	100	69.897	Monodelphis_domestica
ENSGAGG00000023303	TRMT13	96	58.052	ENSMALG00000020965	trmt13	98	50.959	Monopterus_albus
ENSGAGG00000023303	TRMT13	99	72.527	MGP_CAROLIEiJ_G0025568	Trmt13	94	73.964	Mus_caroli
ENSGAGG00000023303	TRMT13	99	73.260	ENSMUSG00000033439	Trmt13	94	75.148	Mus_musculus
ENSGAGG00000023303	TRMT13	99	72.161	MGP_PahariEiJ_G0027014	Trmt13	93	74.850	Mus_pahari
ENSGAGG00000023303	TRMT13	99	73.260	MGP_SPRETEiJ_G0026518	Trmt13	94	75.148	Mus_spretus
ENSGAGG00000023303	TRMT13	79	69.474	ENSMPUG00000002078	-	99	69.474	Mustela_putorius_furo
ENSGAGG00000023303	TRMT13	99	73.091	ENSMLUG00000002124	TRMT13	100	65.904	Myotis_lucifugus
ENSGAGG00000023303	TRMT13	96	51.111	ENSNBRG00000006783	trmt13	97	50.320	Neolamprologus_brichardi
ENSGAGG00000023303	TRMT13	95	74.809	ENSNLEG00000035917	TRMT13	97	70.149	Nomascus_leucogenys
ENSGAGG00000023303	TRMT13	90	65.863	ENSMEUG00000013346	-	100	65.863	Notamacropus_eugenii
ENSGAGG00000023303	TRMT13	94	75.769	ENSOPRG00000012048	TRMT13	63	75.769	Ochotona_princeps
ENSGAGG00000023303	TRMT13	56	72.903	ENSODEG00000006075	-	88	72.903	Octodon_degus
ENSGAGG00000023303	TRMT13	96	60.886	ENSONIG00000004574	trmt13	99	53.715	Oreochromis_niloticus
ENSGAGG00000023303	TRMT13	90	70.276	ENSOANG00000012057	TRMT13	99	70.276	Ornithorhynchus_anatinus
ENSGAGG00000023303	TRMT13	99	73.455	ENSOCUG00000023095	TRMT13	100	69.854	Oryctolagus_cuniculus
ENSGAGG00000023303	TRMT13	96	52.941	ENSORLG00000003320	trmt13	99	49.788	Oryzias_latipes
ENSGAGG00000023303	TRMT13	96	52.222	ENSORLG00020005972	trmt13	98	49.367	Oryzias_latipes_hni
ENSGAGG00000023303	TRMT13	96	59.259	ENSORLG00015002270	trmt13	99	53.191	Oryzias_latipes_hsok
ENSGAGG00000023303	TRMT13	97	59.140	ENSOMEG00000006724	trmt13	97	52.610	Oryzias_melastigma
ENSGAGG00000023303	TRMT13	99	72.364	ENSOGAG00000005618	TRMT13	96	69.102	Otolemur_garnettii
ENSGAGG00000023303	TRMT13	99	75.636	ENSOARG00000017983	TRMT13	100	70.539	Ovis_aries
ENSGAGG00000023303	TRMT13	95	75.191	ENSPPAG00000043736	TRMT13	97	70.362	Pan_paniscus
ENSGAGG00000023303	TRMT13	99	74.909	ENSPPRG00000003424	TRMT13	100	70.747	Panthera_pardus
ENSGAGG00000023303	TRMT13	99	74.909	ENSPTIG00000018598	TRMT13	100	70.747	Panthera_tigris_altaica
ENSGAGG00000023303	TRMT13	95	75.191	ENSPTRG00000001001	TRMT13	97	70.149	Pan_troglodytes
ENSGAGG00000023303	TRMT13	99	73.091	ENSPANG00000007598	TRMT13	100	69.087	Papio_anubis
ENSGAGG00000023303	TRMT13	96	63.158	ENSPKIG00000001514	trmt13	99	55.269	Paramormyrops_kingsleyae
ENSGAGG00000023303	TRMT13	88	93.004	ENSPSIG00000012703	TRMT13	99	90.580	Pelodiscus_sinensis
ENSGAGG00000023303	TRMT13	96	59.091	ENSPMGG00000013298	trmt13	96	52.532	Periophthalmus_magnuspinnatus
ENSGAGG00000023303	TRMT13	95	74.427	ENSPEMG00000000275	Trmt13	96	69.330	Peromyscus_maniculatus_bairdii
ENSGAGG00000023303	TRMT13	96	54.579	ENSPMAG00000000823	trmt13	100	47.035	Petromyzon_marinus
ENSGAGG00000023303	TRMT13	99	73.477	ENSPCIG00000007699	TRMT13	100	71.193	Phascolarctos_cinereus
ENSGAGG00000023303	TRMT13	95	59.160	ENSPFOG00000008675	trmt13	97	51.178	Poecilia_formosa
ENSGAGG00000023303	TRMT13	96	57.554	ENSPLAG00000009709	trmt13	99	50.844	Poecilia_latipinna
ENSGAGG00000023303	TRMT13	96	57.455	ENSPMEG00000022954	trmt13	99	49.894	Poecilia_mexicana
ENSGAGG00000023303	TRMT13	96	57.554	ENSPREG00000005645	trmt13	92	54.804	Poecilia_reticulata
ENSGAGG00000023303	TRMT13	99	72.000	ENSPPYG00000001120	TRMT13	99	69.023	Pongo_abelii
ENSGAGG00000023303	TRMT13	95	75.191	ENSPCAG00000002340	TRMT13	97	69.723	Procavia_capensis
ENSGAGG00000023303	TRMT13	99	72.364	ENSPCOG00000017984	TRMT13	100	69.502	Propithecus_coquereli
ENSGAGG00000023303	TRMT13	99	74.182	ENSPVAG00000017430	TRMT13	100	69.710	Pteropus_vampyrus
ENSGAGG00000023303	TRMT13	96	56.827	ENSPNYG00000013690	trmt13	99	51.502	Pundamilia_nyererei
ENSGAGG00000023303	TRMT13	98	62.593	ENSPNAG00000022130	trmt13	99	55.745	Pygocentrus_nattereri
ENSGAGG00000023303	TRMT13	99	72.000	ENSRNOG00000015140	Trmt13	96	68.487	Rattus_norvegicus
ENSGAGG00000023303	TRMT13	99	73.091	ENSRBIG00000037686	TRMT13	100	69.087	Rhinopithecus_bieti
ENSGAGG00000023303	TRMT13	99	73.091	ENSRROG00000044057	TRMT13	100	69.087	Rhinopithecus_roxellana
ENSGAGG00000023303	TRMT13	93	30.745	YOL125W	-	62	30.745	Saccharomyces_cerevisiae
ENSGAGG00000023303	TRMT13	99	73.091	ENSSBOG00000026541	TRMT13	100	69.087	Saimiri_boliviensis_boliviensis
ENSGAGG00000023303	TRMT13	90	72.811	ENSSHAG00000005213	TRMT13	96	72.811	Sarcophilus_harrisii
ENSGAGG00000023303	TRMT13	97	64.794	ENSSFOG00015017560	trmt13	99	55.246	Scleropages_formosus
ENSGAGG00000023303	TRMT13	97	58.974	ENSSMAG00000014592	trmt13	97	52.311	Scophthalmus_maximus
ENSGAGG00000023303	TRMT13	97	57.818	ENSSDUG00000015508	trmt13	96	51.037	Seriola_dumerili
ENSGAGG00000023303	TRMT13	97	57.818	ENSSLDG00000019060	trmt13	97	49.794	Seriola_lalandi_dorsalis
ENSGAGG00000023303	TRMT13	96	64.719	ENSSARG00000010344	TRMT13	97	64.719	Sorex_araneus
ENSGAGG00000023303	TRMT13	93	85.938	ENSSPUG00000016339	TRMT13	100	79.610	Sphenodon_punctatus
ENSGAGG00000023303	TRMT13	96	59.630	ENSSPAG00000011922	trmt13	99	52.421	Stegastes_partitus
ENSGAGG00000023303	TRMT13	99	74.545	ENSSSCG00000006869	TRMT13	100	70.539	Sus_scrofa
ENSGAGG00000023303	TRMT13	95	84.674	ENSTGUG00000005253	TRMT13	100	75.322	Taeniopygia_guttata
ENSGAGG00000023303	TRMT13	95	57.463	ENSTRUG00000008400	trmt13	98	50.317	Takifugu_rubripes
ENSGAGG00000023303	TRMT13	87	57.794	ENSTBEG00000008911	TRMT13	100	57.794	Tupaia_belangeri
ENSGAGG00000023303	TRMT13	100	67.427	ENSUAMG00000017251	TRMT13	100	67.427	Ursus_americanus
ENSGAGG00000023303	TRMT13	99	74.182	ENSUMAG00000007901	TRMT13	99	72.517	Ursus_maritimus
ENSGAGG00000023303	TRMT13	90	59.122	ENSVPAG00000001034	TRMT13	100	59.122	Vicugna_pacos
ENSGAGG00000023303	TRMT13	99	75.182	ENSVVUG00000021996	TRMT13	99	70.625	Vulpes_vulpes
ENSGAGG00000023303	TRMT13	98	64.234	ENSXETG00000013204	trmt13	99	58.228	Xenopus_tropicalis
ENSGAGG00000023303	TRMT13	96	57.194	ENSXMAG00000010765	trmt13	99	50.000	Xiphophorus_maculatus