EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAGG00000023575 (Gene tree)
Gene ID: -
Gene Symbol: SMARCA1
Alias: ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SWI|hSNF2L
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 1
Gene Type: protein_coding
Species: Gopherus_agassizii
Status: putative
Strand: Minus strand
Length: 54846 bases
Position: chrPPEB01001074.1:321575-376420
Accession: 11097
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAGP00000033006	ResIII	PF04851.15	3.1e-11	1	1
ENSGAGP00000033006	DEAD	PF00270.29	8.7e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAGT00000037421	SMARCA1-201	3057	-	ENSGAGP00000033006	972 (aa)	-	UPI000CE64FA0

Gene Model

Click here to download ENSGAGG00000023575's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAGG00000023575's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAGG00000023575	SMARCA1	52	47.809	ENSGAGG00000010269	HELLS	77	47.809
ENSGAGG00000023575	SMARCA1	54	44.485	ENSGAGG00000013176	-	64	44.424
ENSGAGG00000023575	SMARCA1	58	43.783	ENSGAGG00000014432	CHD1L	63	43.783
ENSGAGG00000023575	SMARCA1	99	88.260	ENSGAGG00000019882	SMARCA5	93	88.260

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAGG00000023575	SMARCA1	100	93.519	ENSG00000102038	SMARCA1	92	93.519	Homo_sapiens
ENSGAGG00000023575	SMARCA1	99	84.671	ENSAPOG00000016035	smarca5	98	84.792	Acanthochromis_polyacanthus
ENSGAGG00000023575	SMARCA1	100	92.276	ENSAMEG00000015218	SMARCA1	92	92.276	Ailuropoda_melanoleuca
ENSGAGG00000023575	SMARCA1	93	84.939	ENSACIG00000016982	smarca5	99	85.045	Amphilophus_citrinellus
ENSGAGG00000023575	SMARCA1	99	84.671	ENSAOCG00000015578	smarca5	94	84.671	Amphiprion_ocellaris
ENSGAGG00000023575	SMARCA1	99	84.671	ENSAPEG00000011117	smarca5	99	84.652	Amphiprion_percula
ENSGAGG00000023575	SMARCA1	99	84.362	ENSATEG00000012894	smarca5	93	85.835	Anabas_testudineus
ENSGAGG00000023575	SMARCA1	100	97.840	ENSAPLG00000013149	SMARCA1	99	97.840	Anas_platyrhynchos
ENSGAGG00000023575	SMARCA1	100	96.914	ENSACAG00000011376	SMARCA1	93	96.914	Anolis_carolinensis
ENSGAGG00000023575	SMARCA1	100	88.272	ENSANAG00000023098	SMARCA1	92	88.272	Aotus_nancymaae
ENSGAGG00000023575	SMARCA1	99	84.979	ENSACLG00000025356	smarca5	94	84.979	Astatotilapia_calliptera
ENSGAGG00000023575	SMARCA1	99	85.331	ENSAMXG00000005709	smarca5	93	85.170	Astyanax_mexicanus
ENSGAGG00000023575	SMARCA1	95	91.828	ENSAMXG00000011227	smarca1	99	91.828	Astyanax_mexicanus
ENSGAGG00000023575	SMARCA1	99	92.887	ENSBTAG00000002292	SMARCA1	91	91.979	Bos_taurus
ENSGAGG00000023575	SMARCA1	99	63.812	WBGene00002169	isw-1	96	63.812	Caenorhabditis_elegans
ENSGAGG00000023575	SMARCA1	100	93.416	ENSCJAG00000002868	SMARCA1	92	93.416	Callithrix_jacchus
ENSGAGG00000023575	SMARCA1	100	83.215	ENSCAFG00000018673	SMARCA1	99	83.765	Canis_familiaris
ENSGAGG00000023575	SMARCA1	100	93.621	ENSCAFG00020001751	SMARCA1	92	93.621	Canis_lupus_dingo
ENSGAGG00000023575	SMARCA1	100	93.107	ENSCHIG00000009837	SMARCA1	92	93.107	Capra_hircus
ENSGAGG00000023575	SMARCA1	100	93.416	ENSTSYG00000004240	SMARCA1	94	93.552	Carlito_syrichta
ENSGAGG00000023575	SMARCA1	99	92.379	ENSCPOG00000013601	SMARCA1	92	92.379	Cavia_porcellus
ENSGAGG00000023575	SMARCA1	100	90.432	ENSCCAG00000030817	SMARCA1	92	90.432	Cebus_capucinus
ENSGAGG00000023575	SMARCA1	100	92.378	ENSCATG00000015921	SMARCA1	91	93.671	Cercocebus_atys
ENSGAGG00000023575	SMARCA1	100	92.490	ENSCLAG00000002171	SMARCA1	92	92.490	Chinchilla_lanigera
ENSGAGG00000023575	SMARCA1	100	93.519	ENSCSAG00000008460	SMARCA1	92	93.519	Chlorocebus_sabaeus
ENSGAGG00000023575	SMARCA1	100	100.000	ENSCPBG00000001146	SMARCA1	92	100.000	Chrysemys_picta_bellii
ENSGAGG00000023575	SMARCA1	99	73.998	ENSCING00000004110	swi/snf	96	73.998	Ciona_intestinalis
ENSGAGG00000023575	SMARCA1	99	74.101	ENSCSAVG00000004620	-	100	74.499	Ciona_savignyi
ENSGAGG00000023575	SMARCA1	100	93.416	ENSCANG00000007183	SMARCA1	92	93.416	Colobus_angolensis_palliatus
ENSGAGG00000023575	SMARCA1	100	92.284	ENSCGRG00001010776	Smarca1	92	92.284	Cricetulus_griseus_chok1gshd
ENSGAGG00000023575	SMARCA1	98	92.089	ENSCGRG00000015301	Smarca1	94	92.089	Cricetulus_griseus_crigri
ENSGAGG00000023575	SMARCA1	99	84.568	ENSCSEG00000000328	smarca5	94	84.568	Cynoglossus_semilaevis
ENSGAGG00000023575	SMARCA1	99	84.156	ENSCVAG00000008668	smarca5	99	84.198	Cyprinodon_variegatus
ENSGAGG00000023575	SMARCA1	99	89.170	ENSDARG00000012776	smarca1	95	89.170	Danio_rerio
ENSGAGG00000023575	SMARCA1	99	84.346	ENSDARG00000052348	smarca5	94	84.346	Danio_rerio
ENSGAGG00000023575	SMARCA1	98	92.827	ENSDNOG00000004315	SMARCA1	92	92.827	Dasypus_novemcinctus
ENSGAGG00000023575	SMARCA1	98	92.511	ENSDORG00000009270	Smarca1	91	92.511	Dipodomys_ordii
ENSGAGG00000023575	SMARCA1	96	75.667	FBgn0011604	Iswi	96	72.590	Drosophila_melanogaster
ENSGAGG00000023575	SMARCA1	84	92.727	ENSETEG00000017426	SMARCA1	85	92.727	Echinops_telfairi
ENSGAGG00000023575	SMARCA1	100	82.407	ENSEBUG00000001239	smarca5	96	82.407	Eptatretus_burgeri
ENSGAGG00000023575	SMARCA1	100	88.458	ENSEASG00005008218	SMARCA1	99	88.968	Equus_asinus_asinus
ENSGAGG00000023575	SMARCA1	100	93.416	ENSECAG00000012106	SMARCA1	92	93.416	Equus_caballus
ENSGAGG00000023575	SMARCA1	82	92.715	ENSEEUG00000014927	SMARCA1	82	92.715	Erinaceus_europaeus
ENSGAGG00000023575	SMARCA1	99	90.825	ENSELUG00000010515	smarca1	95	91.340	Esox_lucius
ENSGAGG00000023575	SMARCA1	100	93.313	ENSFCAG00000018496	SMARCA1	92	93.313	Felis_catus
ENSGAGG00000023575	SMARCA1	94	97.588	ENSFALG00000000209	SMARCA1	98	97.588	Ficedula_albicollis
ENSGAGG00000023575	SMARCA1	98	91.771	ENSFDAG00000009818	SMARCA1	94	91.771	Fukomys_damarensis
ENSGAGG00000023575	SMARCA1	99	84.362	ENSFHEG00000007687	smarca5	93	84.362	Fundulus_heteroclitus
ENSGAGG00000023575	SMARCA1	98	98.209	ENSGALG00000008431	SMARCA1	94	98.209	Gallus_gallus
ENSGAGG00000023575	SMARCA1	99	84.568	ENSGAFG00000017731	smarca5	94	84.568	Gambusia_affinis
ENSGAGG00000023575	SMARCA1	73	88.088	ENSGGOG00000012841	-	91	88.088	Gorilla_gorilla
ENSGAGG00000023575	SMARCA1	100	91.975	ENSHGLG00000003080	SMARCA1	92	91.975	Heterocephalus_glaber_female
ENSGAGG00000023575	SMARCA1	99	91.967	ENSHGLG00100001102	SMARCA1	97	91.967	Heterocephalus_glaber_male
ENSGAGG00000023575	SMARCA1	99	84.465	ENSHCOG00000005458	smarca5	94	84.465	Hippocampus_comes
ENSGAGG00000023575	SMARCA1	99	90.279	ENSIPUG00000016905	Smarca1	98	90.279	Ictalurus_punctatus
ENSGAGG00000023575	SMARCA1	99	85.067	ENSIPUG00000005229	SMARCA5	96	85.067	Ictalurus_punctatus
ENSGAGG00000023575	SMARCA1	100	93.416	ENSSTOG00000014524	SMARCA1	94	93.409	Ictidomys_tridecemlineatus
ENSGAGG00000023575	SMARCA1	100	92.593	ENSJJAG00000002593	Smarca1	92	92.593	Jaculus_jaculus
ENSGAGG00000023575	SMARCA1	99	84.156	ENSKMAG00000003777	smarca5	94	84.156	Kryptolebias_marmoratus
ENSGAGG00000023575	SMARCA1	99	83.951	ENSLBEG00000018112	smarca5	94	83.951	Labrus_bergylta
ENSGAGG00000023575	SMARCA1	94	85.542	ENSLBEG00000013295	SMARCA1	100	85.714	Labrus_bergylta
ENSGAGG00000023575	SMARCA1	100	94.342	ENSLACG00000016697	SMARCA1	96	94.342	Latimeria_chalumnae
ENSGAGG00000023575	SMARCA1	99	92.791	ENSLOCG00000014591	smarca1	95	92.791	Lepisosteus_oculatus
ENSGAGG00000023575	SMARCA1	99	92.894	ENSLAFG00000000896	SMARCA1	97	92.894	Loxodonta_africana
ENSGAGG00000023575	SMARCA1	100	93.519	ENSMFAG00000002117	SMARCA1	94	93.664	Macaca_fascicularis
ENSGAGG00000023575	SMARCA1	100	92.378	ENSMMUG00000008818	SMARCA1	98	93.658	Macaca_mulatta
ENSGAGG00000023575	SMARCA1	100	92.378	ENSMNEG00000041768	SMARCA1	94	93.664	Macaca_nemestrina
ENSGAGG00000023575	SMARCA1	100	93.416	ENSMLEG00000043198	SMARCA1	92	93.416	Mandrillus_leucophaeus
ENSGAGG00000023575	SMARCA1	99	84.671	ENSMAMG00000014294	smarca5	93	84.671	Mastacembelus_armatus
ENSGAGG00000023575	SMARCA1	99	84.979	ENSMZEG00005009369	smarca5	94	84.979	Maylandia_zebra
ENSGAGG00000023575	SMARCA1	100	96.545	ENSMGAG00000007042	SMARCA1	97	96.545	Meleagris_gallopavo
ENSGAGG00000023575	SMARCA1	98	91.983	ENSMAUG00000008133	Smarca1	91	91.983	Mesocricetus_auratus
ENSGAGG00000023575	SMARCA1	100	93.519	ENSMICG00000015768	SMARCA1	92	93.519	Microcebus_murinus
ENSGAGG00000023575	SMARCA1	100	91.975	ENSMOCG00000009464	Smarca1	91	91.975	Microtus_ochrogaster
ENSGAGG00000023575	SMARCA1	99	83.025	ENSMMOG00000005547	smarca5	98	83.025	Mola_mola
ENSGAGG00000023575	SMARCA1	100	96.914	ENSMODG00000013187	-	94	96.914	Monodelphis_domestica
ENSGAGG00000023575	SMARCA1	99	84.362	ENSMALG00000002081	smarca5	95	84.906	Monopterus_albus
ENSGAGG00000023575	SMARCA1	100	92.078	MGP_CAROLIEiJ_G0033034	Smarca1	92	92.078	Mus_caroli
ENSGAGG00000023575	SMARCA1	100	92.078	ENSMUSG00000031099	Smarca1	92	92.078	Mus_musculus
ENSGAGG00000023575	SMARCA1	100	91.872	MGP_PahariEiJ_G0031579	Smarca1	92	91.872	Mus_pahari
ENSGAGG00000023575	SMARCA1	100	92.078	MGP_SPRETEiJ_G0034192	Smarca1	92	92.078	Mus_spretus
ENSGAGG00000023575	SMARCA1	100	92.276	ENSMPUG00000017423	SMARCA1	87	92.276	Mustela_putorius_furo
ENSGAGG00000023575	SMARCA1	100	90.872	ENSMLUG00000029614	SMARCA1	92	90.872	Myotis_lucifugus
ENSGAGG00000023575	SMARCA1	98	92.827	ENSNGAG00000006492	Smarca1	91	92.827	Nannospalax_galili
ENSGAGG00000023575	SMARCA1	99	84.979	ENSNBRG00000004463	smarca5	97	84.979	Neolamprologus_brichardi
ENSGAGG00000023575	SMARCA1	100	91.768	ENSNLEG00000015179	SMARCA1	95	92.932	Nomascus_leucogenys
ENSGAGG00000023575	SMARCA1	94	86.905	ENSMEUG00000008819	SMARCA1	97	86.905	Notamacropus_eugenii
ENSGAGG00000023575	SMARCA1	98	91.458	ENSODEG00000012163	SMARCA1	91	91.458	Octodon_degus
ENSGAGG00000023575	SMARCA1	99	84.979	ENSONIG00000009993	smarca5	94	84.979	Oreochromis_niloticus
ENSGAGG00000023575	SMARCA1	100	98.354	ENSOANG00000002862	SMARCA1	100	98.354	Ornithorhynchus_anatinus
ENSGAGG00000023575	SMARCA1	100	92.798	ENSOCUG00000001047	SMARCA1	92	92.798	Oryctolagus_cuniculus
ENSGAGG00000023575	SMARCA1	99	85.082	ENSORLG00000021998	smarca5	93	85.082	Oryzias_latipes
ENSGAGG00000023575	SMARCA1	99	85.185	ENSORLG00020017679	smarca5	93	85.185	Oryzias_latipes_hni
ENSGAGG00000023575	SMARCA1	99	85.082	ENSORLG00015017210	smarca5	93	85.082	Oryzias_latipes_hsok
ENSGAGG00000023575	SMARCA1	99	85.185	ENSOMEG00000000086	smarca5	94	85.185	Oryzias_melastigma
ENSGAGG00000023575	SMARCA1	98	92.604	ENSOGAG00000004399	SMARCA1	91	92.604	Otolemur_garnettii
ENSGAGG00000023575	SMARCA1	100	93.107	ENSOARG00000014638	SMARCA1	99	93.107	Ovis_aries
ENSGAGG00000023575	SMARCA1	100	93.519	ENSPPAG00000034647	SMARCA1	92	93.519	Pan_paniscus
ENSGAGG00000023575	SMARCA1	100	93.519	ENSPPRG00000008929	SMARCA1	92	93.519	Panthera_pardus
ENSGAGG00000023575	SMARCA1	100	91.507	ENSPTIG00000000915	SMARCA1	95	91.507	Panthera_tigris_altaica
ENSGAGG00000023575	SMARCA1	100	93.519	ENSPTRG00000049876	SMARCA1	91	93.671	Pan_troglodytes
ENSGAGG00000023575	SMARCA1	100	93.519	ENSPANG00000003871	SMARCA1	92	93.519	Papio_anubis
ENSGAGG00000023575	SMARCA1	95	90.655	ENSPKIG00000013411	smarca1	94	90.675	Paramormyrops_kingsleyae
ENSGAGG00000023575	SMARCA1	100	99.383	ENSPSIG00000010101	SMARCA1	100	99.383	Pelodiscus_sinensis
ENSGAGG00000023575	SMARCA1	98	92.405	ENSPEMG00000017503	Smarca1	91	92.405	Peromyscus_maniculatus_bairdii
ENSGAGG00000023575	SMARCA1	100	97.531	ENSPCIG00000015460	SMARCA1	95	97.531	Phascolarctos_cinereus
ENSGAGG00000023575	SMARCA1	99	84.465	ENSPFOG00000007649	smarca5	94	84.465	Poecilia_formosa
ENSGAGG00000023575	SMARCA1	99	84.465	ENSPLAG00000003363	smarca5	94	84.465	Poecilia_latipinna
ENSGAGG00000023575	SMARCA1	99	84.568	ENSPMEG00000019849	smarca5	94	84.568	Poecilia_mexicana
ENSGAGG00000023575	SMARCA1	99	84.568	ENSPREG00000023250	smarca5	94	84.568	Poecilia_reticulata
ENSGAGG00000023575	SMARCA1	100	90.638	ENSPPYG00000020703	SMARCA1	92	90.638	Pongo_abelii
ENSGAGG00000023575	SMARCA1	80	84.626	ENSPCOG00000020722	SMARCA1	94	89.102	Propithecus_coquereli
ENSGAGG00000023575	SMARCA1	91	91.495	ENSPVAG00000003805	SMARCA1	91	85.417	Pteropus_vampyrus
ENSGAGG00000023575	SMARCA1	59	88.169	ENSPNYG00000012299	smarca5	88	88.169	Pundamilia_nyererei
ENSGAGG00000023575	SMARCA1	100	92.181	ENSRNOG00000003762	Smarca1	92	92.181	Rattus_norvegicus
ENSGAGG00000023575	SMARCA1	100	93.416	ENSRROG00000034167	SMARCA1	92	93.416	Rhinopithecus_roxellana
ENSGAGG00000023575	SMARCA1	100	93.416	ENSSBOG00000020641	SMARCA1	99	93.416	Saimiri_boliviensis_boliviensis
ENSGAGG00000023575	SMARCA1	100	89.311	ENSSHAG00000013518	SMARCA1	99	89.311	Sarcophilus_harrisii
ENSGAGG00000023575	SMARCA1	99	90.965	ENSSFOG00015009043	smarca1	95	90.965	Scleropages_formosus
ENSGAGG00000023575	SMARCA1	99	85.052	ENSSFOG00015016794	smarca5	100	85.052	Scleropages_formosus
ENSGAGG00000023575	SMARCA1	99	83.951	ENSSMAG00000004801	smarca5	94	83.951	Scophthalmus_maximus
ENSGAGG00000023575	SMARCA1	99	84.259	ENSSDUG00000020690	smarca5	94	84.259	Seriola_dumerili
ENSGAGG00000023575	SMARCA1	99	84.259	ENSSLDG00000025190	smarca5	94	84.259	Seriola_lalandi_dorsalis
ENSGAGG00000023575	SMARCA1	84	92.553	ENSSARG00000000842	SMARCA1	83	92.553	Sorex_araneus
ENSGAGG00000023575	SMARCA1	98	97.682	ENSSPUG00000000590	SMARCA1	92	97.682	Sphenodon_punctatus
ENSGAGG00000023575	SMARCA1	99	84.774	ENSSPAG00000002894	smarca5	97	84.902	Stegastes_partitus
ENSGAGG00000023575	SMARCA1	99	93.299	ENSSSCG00000012649	SMARCA1	94	93.306	Sus_scrofa
ENSGAGG00000023575	SMARCA1	100	97.222	ENSTGUG00000003899	-	99	97.222	Taeniopygia_guttata
ENSGAGG00000023575	SMARCA1	99	84.671	ENSTRUG00000014094	smarca5	94	84.671	Takifugu_rubripes
ENSGAGG00000023575	SMARCA1	99	83.230	ENSTNIG00000017717	smarca5	93	83.230	Tetraodon_nigroviridis
ENSGAGG00000023575	SMARCA1	92	90.919	ENSTBEG00000014973	SMARCA1	91	90.919	Tupaia_belangeri
ENSGAGG00000023575	SMARCA1	98	89.062	ENSTTRG00000006168	SMARCA1	97	89.062	Tursiops_truncatus
ENSGAGG00000023575	SMARCA1	100	93.210	ENSUAMG00000020201	SMARCA1	92	93.210	Ursus_americanus
ENSGAGG00000023575	SMARCA1	99	89.083	ENSUMAG00000004073	SMARCA1	96	92.138	Ursus_maritimus
ENSGAGG00000023575	SMARCA1	78	93.478	ENSVPAG00000010492	-	79	93.478	Vicugna_pacos
ENSGAGG00000023575	SMARCA1	100	93.621	ENSVVUG00000008878	SMARCA1	99	93.776	Vulpes_vulpes
ENSGAGG00000023575	SMARCA1	99	93.210	ENSXETG00000001526	smarca1	97	93.210	Xenopus_tropicalis
ENSGAGG00000023575	SMARCA1	99	84.465	ENSXCOG00000011170	smarca5	96	84.465	Xiphophorus_couchianus
ENSGAGG00000023575	SMARCA1	99	84.465	ENSXMAG00000009678	smarca5	97	85.840	Xiphophorus_maculatus