EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAGG00000024065 (Gene tree)
Gene ID: -
Gene Symbol: LSM1
Alias: CASM|YJL124C
Full Name: LSM1 homolog%2C mRNA degradation associated
Gene Type: protein_coding
Species: Gopherus_agassizii
Status: putative
Strand: Minus strand
Length: 8734 bases
Position: chrPPEB01001681.1:159785-168518
Accession: 20472
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAGP00000033817	LSM	PF01423.22	2.3e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAGT00000038306	LSM1-201	860	-	ENSGAGP00000033817	133 (aa)	-	UPI00038904E2

Gene Model

Click here to download ENSGAGG00000024065's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAGG00000024065's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAGG00000024065	LSM1	65	34.091	ENSGAGG00000017366	LSM8	92	34.091

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAGG00000024065	LSM1	100	95.489	ENSG00000175324	LSM1	100	95.489	Homo_sapiens
ENSGAGG00000024065	LSM1	100	85.714	ENSAPOG00000010833	lsm1	100	85.714	Acanthochromis_polyacanthus
ENSGAGG00000024065	LSM1	100	95.489	ENSAMEG00000011141	LSM1	100	95.489	Ailuropoda_melanoleuca
ENSGAGG00000024065	LSM1	58	93.506	ENSACIG00000019593	lsm1	64	93.506	Amphilophus_citrinellus
ENSGAGG00000024065	LSM1	100	85.714	ENSAOCG00000017997	-	100	85.714	Amphiprion_ocellaris
ENSGAGG00000024065	LSM1	100	85.714	ENSAOCG00000017096	lsm1	100	85.714	Amphiprion_ocellaris
ENSGAGG00000024065	LSM1	100	85.714	ENSAPEG00000011669	lsm1	100	85.714	Amphiprion_percula
ENSGAGG00000024065	LSM1	100	85.714	ENSATEG00000022266	lsm1	100	85.714	Anabas_testudineus
ENSGAGG00000024065	LSM1	100	95.489	ENSANAG00000027785	LSM1	100	95.489	Aotus_nancymaae
ENSGAGG00000024065	LSM1	100	85.714	ENSACLG00000011400	lsm1	100	85.714	Astatotilapia_calliptera
ENSGAGG00000024065	LSM1	100	88.722	ENSAMXG00000005441	lsm1	100	88.722	Astyanax_mexicanus
ENSGAGG00000024065	LSM1	100	94.737	ENSBTAG00000001612	LSM1	100	94.737	Bos_taurus
ENSGAGG00000024065	LSM1	87	51.695	WBGene00003076	lsm-1	90	51.695	Caenorhabditis_elegans
ENSGAGG00000024065	LSM1	100	94.737	ENSCJAG00000048015	LSM1	100	94.737	Callithrix_jacchus
ENSGAGG00000024065	LSM1	100	95.489	ENSCAFG00000006113	LSM1	100	95.489	Canis_familiaris
ENSGAGG00000024065	LSM1	100	95.489	ENSCAFG00020001822	LSM1	100	95.489	Canis_lupus_dingo
ENSGAGG00000024065	LSM1	100	95.489	ENSCHIG00000013194	LSM1	100	95.489	Capra_hircus
ENSGAGG00000024065	LSM1	100	95.489	ENSTSYG00000010394	LSM1	100	95.489	Carlito_syrichta
ENSGAGG00000024065	LSM1	100	95.489	ENSCPOG00000032671	LSM1	100	95.489	Cavia_porcellus
ENSGAGG00000024065	LSM1	100	95.489	ENSCCAG00000037171	LSM1	100	95.489	Cebus_capucinus
ENSGAGG00000024065	LSM1	100	95.489	ENSCATG00000020377	LSM1	100	95.489	Cercocebus_atys
ENSGAGG00000024065	LSM1	100	93.985	ENSCLAG00000001137	LSM1	100	93.985	Chinchilla_lanigera
ENSGAGG00000024065	LSM1	100	95.489	ENSCSAG00000015485	LSM1	100	95.489	Chlorocebus_sabaeus
ENSGAGG00000024065	LSM1	100	94.737	ENSCHOG00000006030	LSM1	100	94.737	Choloepus_hoffmanni
ENSGAGG00000024065	LSM1	95	92.913	ENSCPBG00000006569	LSM1	86	92.913	Chrysemys_picta_bellii
ENSGAGG00000024065	LSM1	99	68.939	ENSCING00000013536	-	99	68.939	Ciona_intestinalis
ENSGAGG00000024065	LSM1	100	95.489	ENSCANG00000019173	LSM1	100	95.489	Colobus_angolensis_palliatus
ENSGAGG00000024065	LSM1	100	94.737	ENSCGRG00001024560	-	100	94.737	Cricetulus_griseus_chok1gshd
ENSGAGG00000024065	LSM1	80	78.378	ENSCGRG00001002259	-	97	78.378	Cricetulus_griseus_chok1gshd
ENSGAGG00000024065	LSM1	100	94.737	ENSCGRG00000006554	-	100	94.737	Cricetulus_griseus_crigri
ENSGAGG00000024065	LSM1	80	78.378	ENSCGRG00000013603	-	97	78.378	Cricetulus_griseus_crigri
ENSGAGG00000024065	LSM1	100	84.211	ENSCSEG00000008319	lsm1	92	84.211	Cynoglossus_semilaevis
ENSGAGG00000024065	LSM1	100	84.962	ENSCSEG00000010570	lsm1	92	84.962	Cynoglossus_semilaevis
ENSGAGG00000024065	LSM1	100	84.962	ENSCVAG00000003871	lsm1	100	84.962	Cyprinodon_variegatus
ENSGAGG00000024065	LSM1	100	87.970	ENSDARG00000043177	lsm1	100	87.970	Danio_rerio
ENSGAGG00000024065	LSM1	100	95.489	ENSDNOG00000046387	-	100	95.489	Dasypus_novemcinctus
ENSGAGG00000024065	LSM1	100	89.474	ENSDNOG00000030989	-	100	89.474	Dasypus_novemcinctus
ENSGAGG00000024065	LSM1	100	94.737	ENSDNOG00000032911	-	100	94.737	Dasypus_novemcinctus
ENSGAGG00000024065	LSM1	89	74.790	ENSDNOG00000046620	-	100	74.790	Dasypus_novemcinctus
ENSGAGG00000024065	LSM1	100	95.489	ENSDORG00000028172	Lsm1	100	95.489	Dipodomys_ordii
ENSGAGG00000024065	LSM1	93	65.323	FBgn0261067	LSm1	91	65.323	Drosophila_melanogaster
ENSGAGG00000024065	LSM1	100	93.985	ENSEASG00005016677	LSM1	100	93.985	Equus_asinus_asinus
ENSGAGG00000024065	LSM1	100	93.985	ENSECAG00000010461	LSM1	100	93.985	Equus_caballus
ENSGAGG00000024065	LSM1	100	68.421	ENSEEUG00000015181	LSM1	100	68.421	Erinaceus_europaeus
ENSGAGG00000024065	LSM1	100	86.466	ENSELUG00000002322	lsm1	100	86.466	Esox_lucius
ENSGAGG00000024065	LSM1	100	81.203	ENSELUG00000023374	lsm1	100	81.203	Esox_lucius
ENSGAGG00000024065	LSM1	100	95.489	ENSFCAG00000039335	LSM1	100	95.489	Felis_catus
ENSGAGG00000024065	LSM1	89	97.458	ENSFALG00000006723	LSM1	100	97.458	Ficedula_albicollis
ENSGAGG00000024065	LSM1	100	95.489	ENSFDAG00000007658	LSM1	100	95.489	Fukomys_damarensis
ENSGAGG00000024065	LSM1	100	84.962	ENSFHEG00000009556	lsm1	100	84.962	Fundulus_heteroclitus
ENSGAGG00000024065	LSM1	100	83.459	ENSGMOG00000016651	lsm1	98	83.459	Gadus_morhua
ENSGAGG00000024065	LSM1	100	96.241	ENSGALG00000003245	LSM1	100	96.241	Gallus_gallus
ENSGAGG00000024065	LSM1	100	84.962	ENSGAFG00000011355	lsm1	100	84.962	Gambusia_affinis
ENSGAGG00000024065	LSM1	100	85.714	ENSGACG00000011763	lsm1	98	85.714	Gasterosteus_aculeatus
ENSGAGG00000024065	LSM1	100	95.489	ENSGGOG00000022658	LSM1	100	95.489	Gorilla_gorilla
ENSGAGG00000024065	LSM1	100	85.714	ENSHBUG00000010897	lsm1	100	85.714	Haplochromis_burtoni
ENSGAGG00000024065	LSM1	100	75.940	ENSHGLG00000017574	-	100	75.940	Heterocephalus_glaber_female
ENSGAGG00000024065	LSM1	100	95.489	ENSHGLG00000005711	LSM1	100	95.489	Heterocephalus_glaber_female
ENSGAGG00000024065	LSM1	100	95.489	ENSHGLG00100017660	LSM1	100	95.489	Heterocephalus_glaber_male
ENSGAGG00000024065	LSM1	100	75.940	ENSHGLG00100012152	-	100	75.940	Heterocephalus_glaber_male
ENSGAGG00000024065	LSM1	100	84.211	ENSHCOG00000017233	lsm1	100	84.211	Hippocampus_comes
ENSGAGG00000024065	LSM1	100	87.218	ENSIPUG00000002312	LSM1	100	87.218	Ictalurus_punctatus
ENSGAGG00000024065	LSM1	58	97.403	ENSSTOG00000026870	LSM1	94	97.403	Ictidomys_tridecemlineatus
ENSGAGG00000024065	LSM1	100	93.985	ENSJJAG00000014605	-	100	93.985	Jaculus_jaculus
ENSGAGG00000024065	LSM1	100	85.714	ENSKMAG00000003016	lsm1	100	85.714	Kryptolebias_marmoratus
ENSGAGG00000024065	LSM1	100	85.714	ENSLBEG00000022352	lsm1	100	85.714	Labrus_bergylta
ENSGAGG00000024065	LSM1	89	91.525	ENSLACG00000010947	LSM1	98	91.525	Latimeria_chalumnae
ENSGAGG00000024065	LSM1	100	93.233	ENSLOCG00000015149	lsm1	100	93.233	Lepisosteus_oculatus
ENSGAGG00000024065	LSM1	100	95.489	ENSLAFG00000003534	LSM1	100	95.489	Loxodonta_africana
ENSGAGG00000024065	LSM1	100	95.489	ENSMFAG00000032661	LSM1	100	95.489	Macaca_fascicularis
ENSGAGG00000024065	LSM1	100	95.489	ENSMLEG00000034535	LSM1	100	95.489	Mandrillus_leucophaeus
ENSGAGG00000024065	LSM1	100	85.714	ENSMAMG00000007464	lsm1	100	85.714	Mastacembelus_armatus
ENSGAGG00000024065	LSM1	100	85.714	ENSMZEG00005010321	lsm1	100	85.714	Maylandia_zebra
ENSGAGG00000024065	LSM1	100	96.241	ENSMGAG00000002125	LSM1	100	96.241	Meleagris_gallopavo
ENSGAGG00000024065	LSM1	100	94.737	ENSMICG00000030726	LSM1	100	94.737	Microcebus_murinus
ENSGAGG00000024065	LSM1	100	94.737	ENSMOCG00000022817	Lsm1	100	94.737	Microtus_ochrogaster
ENSGAGG00000024065	LSM1	100	86.466	ENSMMOG00000015466	lsm1	100	86.466	Mola_mola
ENSGAGG00000024065	LSM1	100	97.744	ENSMODG00000010732	-	100	97.744	Monodelphis_domestica
ENSGAGG00000024065	LSM1	58	93.506	ENSMALG00000001478	lsm1	82	93.506	Monopterus_albus
ENSGAGG00000024065	LSM1	100	93.233	MGP_CAROLIEiJ_G0030930	Lsm1	100	93.233	Mus_caroli
ENSGAGG00000024065	LSM1	100	93.233	ENSMUSG00000037296	Lsm1	100	93.233	Mus_musculus
ENSGAGG00000024065	LSM1	100	93.233	MGP_PahariEiJ_G0021400	Lsm1	100	93.233	Mus_pahari
ENSGAGG00000024065	LSM1	100	93.233	MGP_SPRETEiJ_G0032049	Lsm1	100	93.233	Mus_spretus
ENSGAGG00000024065	LSM1	100	96.241	ENSMPUG00000009883	LSM1	100	96.241	Mustela_putorius_furo
ENSGAGG00000024065	LSM1	100	95.489	ENSMLUG00000003734	LSM1	100	95.489	Myotis_lucifugus
ENSGAGG00000024065	LSM1	100	94.737	ENSNGAG00000003753	Lsm1	100	94.737	Nannospalax_galili
ENSGAGG00000024065	LSM1	58	93.506	ENSNBRG00000017370	lsm1	66	93.506	Neolamprologus_brichardi
ENSGAGG00000024065	LSM1	100	95.489	ENSNLEG00000029390	LSM1	100	95.489	Nomascus_leucogenys
ENSGAGG00000024065	LSM1	100	97.744	ENSMEUG00000014077	LSM1	100	97.744	Notamacropus_eugenii
ENSGAGG00000024065	LSM1	88	93.162	ENSOPRG00000000333	LSM1	100	93.162	Ochotona_princeps
ENSGAGG00000024065	LSM1	100	95.489	ENSODEG00000004834	LSM1	100	95.489	Octodon_degus
ENSGAGG00000024065	LSM1	100	85.714	ENSONIG00000010782	lsm1	100	85.714	Oreochromis_niloticus
ENSGAGG00000024065	LSM1	100	96.992	ENSOANG00000003256	LSM1	100	96.992	Ornithorhynchus_anatinus
ENSGAGG00000024065	LSM1	100	95.489	ENSOCUG00000015399	LSM1	100	95.489	Oryctolagus_cuniculus
ENSGAGG00000024065	LSM1	100	87.218	ENSORLG00000030288	lsm1	100	87.218	Oryzias_latipes
ENSGAGG00000024065	LSM1	100	85.714	ENSORLG00020006213	-	86	85.714	Oryzias_latipes_hni
ENSGAGG00000024065	LSM1	100	87.218	ENSORLG00020003941	lsm1	100	87.218	Oryzias_latipes_hni
ENSGAGG00000024065	LSM1	100	87.218	ENSORLG00015018350	lsm1	100	87.218	Oryzias_latipes_hsok
ENSGAGG00000024065	LSM1	100	85.714	ENSOMEG00000012454	lsm1	100	85.714	Oryzias_melastigma
ENSGAGG00000024065	LSM1	100	95.489	ENSOGAG00000015161	LSM1	100	95.489	Otolemur_garnettii
ENSGAGG00000024065	LSM1	100	95.489	ENSOARG00000001317	LSM1	100	95.489	Ovis_aries
ENSGAGG00000024065	LSM1	100	95.489	ENSPPAG00000032279	LSM1	100	95.489	Pan_paniscus
ENSGAGG00000024065	LSM1	100	95.489	ENSPPRG00000014172	-	100	95.489	Panthera_pardus
ENSGAGG00000024065	LSM1	100	95.489	ENSPTIG00000010289	LSM1	100	95.489	Panthera_tigris_altaica
ENSGAGG00000024065	LSM1	100	95.489	ENSPTRG00000020169	LSM1	100	95.489	Pan_troglodytes
ENSGAGG00000024065	LSM1	100	95.489	ENSPANG00000008814	LSM1	100	95.489	Papio_anubis
ENSGAGG00000024065	LSM1	100	82.707	ENSPKIG00000019409	LSM1	99	82.707	Paramormyrops_kingsleyae
ENSGAGG00000024065	LSM1	100	90.226	ENSPKIG00000001839	lsm1	100	90.226	Paramormyrops_kingsleyae
ENSGAGG00000024065	LSM1	98	93.077	ENSPSIG00000012563	LSM1	99	93.077	Pelodiscus_sinensis
ENSGAGG00000024065	LSM1	58	93.506	ENSPMGG00000022999	lsm1	73	93.506	Periophthalmus_magnuspinnatus
ENSGAGG00000024065	LSM1	85	79.646	ENSPMAG00000002671	lsm1	100	79.646	Petromyzon_marinus
ENSGAGG00000024065	LSM1	100	96.241	ENSPCIG00000008880	LSM1	100	96.241	Phascolarctos_cinereus
ENSGAGG00000024065	LSM1	100	84.962	ENSPFOG00000016029	lsm1	100	84.962	Poecilia_formosa
ENSGAGG00000024065	LSM1	100	84.962	ENSPLAG00000007879	lsm1	100	84.962	Poecilia_latipinna
ENSGAGG00000024065	LSM1	100	84.962	ENSPMEG00000023550	lsm1	100	84.962	Poecilia_mexicana
ENSGAGG00000024065	LSM1	100	84.962	ENSPREG00000009574	lsm1	100	84.962	Poecilia_reticulata
ENSGAGG00000024065	LSM1	100	95.489	ENSPPYG00000018521	LSM1	100	95.489	Pongo_abelii
ENSGAGG00000024065	LSM1	100	95.489	ENSPCOG00000020901	-	100	95.489	Propithecus_coquereli
ENSGAGG00000024065	LSM1	100	95.489	ENSPVAG00000006016	LSM1	100	95.489	Pteropus_vampyrus
ENSGAGG00000024065	LSM1	100	85.714	ENSPNYG00000018067	lsm1	100	85.714	Pundamilia_nyererei
ENSGAGG00000024065	LSM1	100	87.970	ENSPNAG00000013707	lsm1	100	87.970	Pygocentrus_nattereri
ENSGAGG00000024065	LSM1	100	93.985	ENSRNOG00000015375	Lsm1	100	93.985	Rattus_norvegicus
ENSGAGG00000024065	LSM1	100	95.489	ENSRBIG00000027449	LSM1	100	95.489	Rhinopithecus_bieti
ENSGAGG00000024065	LSM1	100	95.489	ENSRROG00000036074	LSM1	100	95.489	Rhinopithecus_roxellana
ENSGAGG00000024065	LSM1	83	45.299	YJL124C	LSM1	67	45.299	Saccharomyces_cerevisiae
ENSGAGG00000024065	LSM1	100	97.744	ENSSHAG00000017260	LSM1	100	97.744	Sarcophilus_harrisii
ENSGAGG00000024065	LSM1	100	90.226	ENSSFOG00015019528	lsm1	100	90.226	Scleropages_formosus
ENSGAGG00000024065	LSM1	100	85.714	ENSSMAG00000004930	lsm1	100	85.714	Scophthalmus_maximus
ENSGAGG00000024065	LSM1	100	85.714	ENSSDUG00000021823	lsm1	100	85.714	Seriola_dumerili
ENSGAGG00000024065	LSM1	100	85.714	ENSSLDG00000012154	lsm1	100	85.714	Seriola_lalandi_dorsalis
ENSGAGG00000024065	LSM1	100	100.000	ENSSPUG00000014878	LSM1	100	100.000	Sphenodon_punctatus
ENSGAGG00000024065	LSM1	100	84.962	ENSSPAG00000020548	lsm1	100	84.962	Stegastes_partitus
ENSGAGG00000024065	LSM1	100	95.489	ENSSSCG00000039058	LSM1	100	95.489	Sus_scrofa
ENSGAGG00000024065	LSM1	100	99.248	ENSTGUG00000004793	LSM1	100	99.248	Taeniopygia_guttata
ENSGAGG00000024065	LSM1	100	87.970	ENSTRUG00000025239	lsm1	100	87.970	Takifugu_rubripes
ENSGAGG00000024065	LSM1	100	87.970	ENSTNIG00000004055	lsm1	100	87.970	Tetraodon_nigroviridis
ENSGAGG00000024065	LSM1	88	94.017	ENSTBEG00000015884	LSM1	100	94.017	Tupaia_belangeri
ENSGAGG00000024065	LSM1	100	95.489	ENSTTRG00000004482	LSM1	100	95.489	Tursiops_truncatus
ENSGAGG00000024065	LSM1	100	95.489	ENSUAMG00000004103	LSM1	100	95.489	Ursus_americanus
ENSGAGG00000024065	LSM1	100	95.489	ENSUMAG00000009132	LSM1	100	95.489	Ursus_maritimus
ENSGAGG00000024065	LSM1	58	96.104	ENSVPAG00000011593	LSM1	100	96.104	Vicugna_pacos
ENSGAGG00000024065	LSM1	100	95.489	ENSVVUG00000020191	LSM1	100	95.489	Vulpes_vulpes
ENSGAGG00000024065	LSM1	65	68.605	ENSVVUG00000014880	-	91	68.605	Vulpes_vulpes
ENSGAGG00000024065	LSM1	100	92.701	ENSXETG00000009004	lsm1	100	92.701	Xenopus_tropicalis
ENSGAGG00000024065	LSM1	100	84.211	ENSXCOG00000015631	lsm1	100	84.211	Xiphophorus_couchianus
ENSGAGG00000024065	LSM1	100	84.211	ENSXMAG00000026637	lsm1	100	84.211	Xiphophorus_maculatus