EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGAGG00000024547 (Gene tree)
Gene ID: -
Gene Symbol: SMNDC1
Alias: SMNR|SPF30|TDRD16C
Full Name: survival motor neuron domain containing 1
Gene Type: protein_coding
Species: Gopherus_agassizii
Status: putative
Strand: Plus strand
Length: 17485 bases
Position: chrPPEB01002068.1:106319-123803
Accession: 16900
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAGP00000034529	SMN	PF06003.12	3.2e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAGT00000039098	SMNDC1-201	2503	-	ENSGAGP00000034529	238 (aa)	-	UPI0002C2A985

Gene Model

Click here to download ENSGAGG00000024547's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAGG00000024547's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAGG00000024547	SMNDC1	100	97.479	ENSG00000119953	SMNDC1	100	97.479	Homo_sapiens
ENSGAGG00000024547	SMNDC1	100	75.210	ENSAPOG00000021772	smndc1	100	75.210	Acanthochromis_polyacanthus
ENSGAGG00000024547	SMNDC1	100	97.899	ENSAMEG00000005251	SMNDC1	100	97.899	Ailuropoda_melanoleuca
ENSGAGG00000024547	SMNDC1	100	76.471	ENSACIG00000004819	smndc1	100	76.471	Amphilophus_citrinellus
ENSGAGG00000024547	SMNDC1	100	75.210	ENSAOCG00000017869	smndc1	100	75.210	Amphiprion_ocellaris
ENSGAGG00000024547	SMNDC1	100	75.210	ENSAPEG00000007752	smndc1	100	75.210	Amphiprion_percula
ENSGAGG00000024547	SMNDC1	100	76.471	ENSATEG00000006830	smndc1	100	76.471	Anabas_testudineus
ENSGAGG00000024547	SMNDC1	83	97.980	ENSAPLG00000004322	SMNDC1	100	97.980	Anas_platyrhynchos
ENSGAGG00000024547	SMNDC1	100	95.798	ENSACAG00000005983	SMNDC1	100	95.798	Anolis_carolinensis
ENSGAGG00000024547	SMNDC1	100	97.899	ENSANAG00000032875	SMNDC1	100	97.899	Aotus_nancymaae
ENSGAGG00000024547	SMNDC1	100	76.471	ENSACLG00000016360	smndc1	100	76.471	Astatotilapia_calliptera
ENSGAGG00000024547	SMNDC1	100	76.471	ENSAMXG00000020310	smndc1	100	76.471	Astyanax_mexicanus
ENSGAGG00000024547	SMNDC1	100	97.479	ENSBTAG00000000551	SMNDC1	100	97.479	Bos_taurus
ENSGAGG00000024547	SMNDC1	100	97.899	ENSCJAG00000018624	SMNDC1	100	97.899	Callithrix_jacchus
ENSGAGG00000024547	SMNDC1	100	97.899	ENSCAFG00000010720	SMNDC1	100	97.899	Canis_familiaris
ENSGAGG00000024547	SMNDC1	100	97.899	ENSCAFG00020011913	SMNDC1	100	97.899	Canis_lupus_dingo
ENSGAGG00000024547	SMNDC1	100	97.479	ENSCHIG00000010604	SMNDC1	100	97.479	Capra_hircus
ENSGAGG00000024547	SMNDC1	100	98.319	ENSTSYG00000026454	SMNDC1	100	98.319	Carlito_syrichta
ENSGAGG00000024547	SMNDC1	84	96.517	ENSCAPG00000009132	SMNDC1	100	96.517	Cavia_aperea
ENSGAGG00000024547	SMNDC1	100	97.059	ENSCPOG00000031666	SMNDC1	100	97.059	Cavia_porcellus
ENSGAGG00000024547	SMNDC1	100	97.899	ENSCCAG00000021793	SMNDC1	100	97.899	Cebus_capucinus
ENSGAGG00000024547	SMNDC1	100	97.479	ENSCATG00000035910	SMNDC1	100	97.479	Cercocebus_atys
ENSGAGG00000024547	SMNDC1	100	97.059	ENSCLAG00000002838	SMNDC1	100	97.059	Chinchilla_lanigera
ENSGAGG00000024547	SMNDC1	100	97.899	ENSCSAG00000005169	SMNDC1	100	97.899	Chlorocebus_sabaeus
ENSGAGG00000024547	SMNDC1	81	96.891	ENSCHOG00000002936	SMNDC1	100	96.891	Choloepus_hoffmanni
ENSGAGG00000024547	SMNDC1	100	100.000	ENSCPBG00000012837	SMNDC1	100	100.000	Chrysemys_picta_bellii
ENSGAGG00000024547	SMNDC1	100	76.891	ENSCANG00000036994	-	100	76.891	Colobus_angolensis_palliatus
ENSGAGG00000024547	SMNDC1	100	90.336	ENSCANG00000034620	-	100	90.336	Colobus_angolensis_palliatus
ENSGAGG00000024547	SMNDC1	100	97.899	ENSCANG00000031720	-	100	97.899	Colobus_angolensis_palliatus
ENSGAGG00000024547	SMNDC1	100	97.899	ENSCGRG00001012973	Smndc1	100	97.899	Cricetulus_griseus_chok1gshd
ENSGAGG00000024547	SMNDC1	100	97.899	ENSCGRG00000012396	Smndc1	100	97.899	Cricetulus_griseus_crigri
ENSGAGG00000024547	SMNDC1	100	75.630	ENSCSEG00000015621	smndc1	100	75.630	Cynoglossus_semilaevis
ENSGAGG00000024547	SMNDC1	100	76.891	ENSCVAG00000020432	smndc1	100	76.891	Cyprinodon_variegatus
ENSGAGG00000024547	SMNDC1	100	79.832	ENSDARG00000056235	smndc1	100	79.832	Danio_rerio
ENSGAGG00000024547	SMNDC1	100	97.899	ENSDNOG00000016387	SMNDC1	83	97.899	Dasypus_novemcinctus
ENSGAGG00000024547	SMNDC1	100	97.899	ENSDORG00000023715	Smndc1	100	97.899	Dipodomys_ordii
ENSGAGG00000024547	SMNDC1	95	43.775	FBgn0039977	CG17454	98	43.373	Drosophila_melanogaster
ENSGAGG00000024547	SMNDC1	100	71.369	ENSEBUG00000010929	smndc1	100	70.954	Eptatretus_burgeri
ENSGAGG00000024547	SMNDC1	100	97.899	ENSEASG00005014930	SMNDC1	100	97.899	Equus_asinus_asinus
ENSGAGG00000024547	SMNDC1	100	97.899	ENSECAG00000029973	SMNDC1	100	97.899	Equus_caballus
ENSGAGG00000024547	SMNDC1	83	68.182	ENSEEUG00000013407	-	100	68.182	Erinaceus_europaeus
ENSGAGG00000024547	SMNDC1	100	78.571	ENSELUG00000000227	smndc1	100	78.571	Esox_lucius
ENSGAGG00000024547	SMNDC1	100	97.899	ENSFCAG00000027353	SMNDC1	100	97.899	Felis_catus
ENSGAGG00000024547	SMNDC1	100	97.479	ENSFALG00000002306	SMNDC1	100	97.479	Ficedula_albicollis
ENSGAGG00000024547	SMNDC1	100	96.639	ENSFDAG00000006468	SMNDC1	100	96.639	Fukomys_damarensis
ENSGAGG00000024547	SMNDC1	100	76.471	ENSFHEG00000020150	smndc1	100	76.471	Fundulus_heteroclitus
ENSGAGG00000024547	SMNDC1	100	77.311	ENSGMOG00000016585	smndc1	100	77.311	Gadus_morhua
ENSGAGG00000024547	SMNDC1	100	97.479	ENSGALG00000008561	SMNDC1	100	97.479	Gallus_gallus
ENSGAGG00000024547	SMNDC1	100	75.630	ENSGAFG00000011582	smndc1	100	75.630	Gambusia_affinis
ENSGAGG00000024547	SMNDC1	100	76.050	ENSGACG00000009468	smndc1	100	76.050	Gasterosteus_aculeatus
ENSGAGG00000024547	SMNDC1	100	97.899	ENSGGOG00000010071	SMNDC1	100	97.899	Gorilla_gorilla
ENSGAGG00000024547	SMNDC1	100	76.471	ENSHBUG00000017596	smndc1	100	76.471	Haplochromis_burtoni
ENSGAGG00000024547	SMNDC1	100	96.639	ENSHGLG00000013390	-	100	96.639	Heterocephalus_glaber_female
ENSGAGG00000024547	SMNDC1	100	67.213	ENSHGLG00000001157	-	100	62.041	Heterocephalus_glaber_female
ENSGAGG00000024547	SMNDC1	100	96.639	ENSHGLG00100004814	-	100	96.639	Heterocephalus_glaber_male
ENSGAGG00000024547	SMNDC1	100	75.410	ENSHGLG00100004278	-	100	72.951	Heterocephalus_glaber_male
ENSGAGG00000024547	SMNDC1	100	74.895	ENSHCOG00000000783	smndc1	100	74.895	Hippocampus_comes
ENSGAGG00000024547	SMNDC1	100	78.151	ENSIPUG00000004217	smndc1	100	78.151	Ictalurus_punctatus
ENSGAGG00000024547	SMNDC1	100	98.319	ENSSTOG00000006088	SMNDC1	100	98.319	Ictidomys_tridecemlineatus
ENSGAGG00000024547	SMNDC1	100	97.479	ENSJJAG00000019974	Smndc1	100	97.479	Jaculus_jaculus
ENSGAGG00000024547	SMNDC1	100	75.630	ENSKMAG00000020134	smndc1	100	75.630	Kryptolebias_marmoratus
ENSGAGG00000024547	SMNDC1	100	74.790	ENSLBEG00000004598	smndc1	100	74.790	Labrus_bergylta
ENSGAGG00000024547	SMNDC1	100	84.874	ENSLACG00000007784	SMNDC1	100	84.874	Latimeria_chalumnae
ENSGAGG00000024547	SMNDC1	100	85.294	ENSLOCG00000012355	smndc1	100	85.294	Lepisosteus_oculatus
ENSGAGG00000024547	SMNDC1	100	97.479	ENSLAFG00000014353	SMNDC1	100	97.479	Loxodonta_africana
ENSGAGG00000024547	SMNDC1	100	80.252	ENSMFAG00000038381	-	100	79.412	Macaca_fascicularis
ENSGAGG00000024547	SMNDC1	100	97.899	ENSMFAG00000002433	-	100	97.899	Macaca_fascicularis
ENSGAGG00000024547	SMNDC1	100	80.252	ENSMMUG00000045875	-	100	79.412	Macaca_mulatta
ENSGAGG00000024547	SMNDC1	100	97.899	ENSMMUG00000007775	SMNDC1	100	97.899	Macaca_mulatta
ENSGAGG00000024547	SMNDC1	100	97.899	ENSMNEG00000042963	-	100	97.899	Macaca_nemestrina
ENSGAGG00000024547	SMNDC1	100	86.555	ENSMNEG00000033853	-	100	86.555	Macaca_nemestrina
ENSGAGG00000024547	SMNDC1	100	91.632	ENSMLEG00000040236	SMNDC1	100	91.213	Mandrillus_leucophaeus
ENSGAGG00000024547	SMNDC1	89	73.709	ENSMAMG00000018233	smndc1	87	73.709	Mastacembelus_armatus
ENSGAGG00000024547	SMNDC1	100	76.471	ENSMZEG00005027510	smndc1	100	76.471	Maylandia_zebra
ENSGAGG00000024547	SMNDC1	84	98.500	ENSMGAG00000010777	SMNDC1	84	98.500	Meleagris_gallopavo
ENSGAGG00000024547	SMNDC1	100	97.899	ENSMAUG00000012243	-	100	97.899	Mesocricetus_auratus
ENSGAGG00000024547	SMNDC1	99	78.903	ENSMAUG00000005459	-	93	78.903	Mesocricetus_auratus
ENSGAGG00000024547	SMNDC1	100	84.874	ENSMICG00000031640	-	100	84.874	Microcebus_murinus
ENSGAGG00000024547	SMNDC1	100	97.059	ENSMICG00000027336	-	100	97.059	Microcebus_murinus
ENSGAGG00000024547	SMNDC1	100	97.479	ENSMOCG00000002458	Smndc1	100	97.479	Microtus_ochrogaster
ENSGAGG00000024547	SMNDC1	100	76.471	ENSMMOG00000008856	smndc1	100	76.471	Mola_mola
ENSGAGG00000024547	SMNDC1	100	97.899	ENSMODG00000010542	SMNDC1	100	97.899	Monodelphis_domestica
ENSGAGG00000024547	SMNDC1	100	76.891	ENSMALG00000017598	smndc1	100	76.891	Monopterus_albus
ENSGAGG00000024547	SMNDC1	100	96.639	MGP_CAROLIEiJ_G0023072	Smndc1	100	96.639	Mus_caroli
ENSGAGG00000024547	SMNDC1	100	97.059	ENSMUSG00000025024	Smndc1	100	97.059	Mus_musculus
ENSGAGG00000024547	SMNDC1	100	97.479	MGP_PahariEiJ_G0014560	Smndc1	100	97.479	Mus_pahari
ENSGAGG00000024547	SMNDC1	100	97.059	MGP_SPRETEiJ_G0023993	Smndc1	100	97.059	Mus_spretus
ENSGAGG00000024547	SMNDC1	100	97.899	ENSMPUG00000002089	SMNDC1	100	97.899	Mustela_putorius_furo
ENSGAGG00000024547	SMNDC1	100	97.479	ENSMLUG00000016007	SMNDC1	100	97.479	Myotis_lucifugus
ENSGAGG00000024547	SMNDC1	100	97.479	ENSNGAG00000006833	Smndc1	100	97.479	Nannospalax_galili
ENSGAGG00000024547	SMNDC1	100	76.050	ENSNBRG00000017089	smndc1	100	76.050	Neolamprologus_brichardi
ENSGAGG00000024547	SMNDC1	100	97.899	ENSNLEG00000015471	SMNDC1	100	97.899	Nomascus_leucogenys
ENSGAGG00000024547	SMNDC1	82	57.500	ENSMEUG00000010120	-	82	63.473	Notamacropus_eugenii
ENSGAGG00000024547	SMNDC1	100	97.059	ENSOPRG00000015348	SMNDC1	100	97.059	Ochotona_princeps
ENSGAGG00000024547	SMNDC1	100	67.647	ENSODEG00000007594	-	100	64.706	Octodon_degus
ENSGAGG00000024547	SMNDC1	100	76.050	ENSONIG00000000434	smndc1	100	76.050	Oreochromis_niloticus
ENSGAGG00000024547	SMNDC1	100	98.319	ENSOANG00000001598	SMNDC1	100	98.319	Ornithorhynchus_anatinus
ENSGAGG00000024547	SMNDC1	100	73.950	ENSOCUG00000012274	-	100	74.790	Oryctolagus_cuniculus
ENSGAGG00000024547	SMNDC1	100	97.059	ENSOCUG00000008145	-	100	97.059	Oryctolagus_cuniculus
ENSGAGG00000024547	SMNDC1	100	76.050	ENSORLG00000005934	smndc1	95	76.050	Oryzias_latipes
ENSGAGG00000024547	SMNDC1	100	76.050	ENSORLG00020008796	smndc1	95	76.050	Oryzias_latipes_hni
ENSGAGG00000024547	SMNDC1	100	76.050	ENSORLG00015013666	smndc1	100	76.050	Oryzias_latipes_hsok
ENSGAGG00000024547	SMNDC1	100	78.151	ENSOMEG00000007590	smndc1	100	78.151	Oryzias_melastigma
ENSGAGG00000024547	SMNDC1	100	97.479	ENSOGAG00000000571	SMNDC1	100	97.479	Otolemur_garnettii
ENSGAGG00000024547	SMNDC1	100	97.479	ENSOARG00000009500	SMNDC1	100	97.479	Ovis_aries
ENSGAGG00000024547	SMNDC1	100	97.899	ENSPPAG00000027815	SMNDC1	100	97.899	Pan_paniscus
ENSGAGG00000024547	SMNDC1	100	97.899	ENSPPRG00000013749	SMNDC1	100	97.899	Panthera_pardus
ENSGAGG00000024547	SMNDC1	100	97.899	ENSPTIG00000011451	SMNDC1	100	97.899	Panthera_tigris_altaica
ENSGAGG00000024547	SMNDC1	100	97.899	ENSPTRG00000002937	SMNDC1	100	97.899	Pan_troglodytes
ENSGAGG00000024547	SMNDC1	100	92.017	ENSPANG00000031346	-	100	92.017	Papio_anubis
ENSGAGG00000024547	SMNDC1	100	97.899	ENSPANG00000020805	-	100	97.899	Papio_anubis
ENSGAGG00000024547	SMNDC1	100	81.092	ENSPKIG00000017164	smndc1	100	81.092	Paramormyrops_kingsleyae
ENSGAGG00000024547	SMNDC1	100	99.580	ENSPSIG00000012257	SMNDC1	100	99.580	Pelodiscus_sinensis
ENSGAGG00000024547	SMNDC1	100	73.529	ENSPMGG00000015651	smndc1	100	73.950	Periophthalmus_magnuspinnatus
ENSGAGG00000024547	SMNDC1	100	97.899	ENSPEMG00000022058	Smndc1	100	97.899	Peromyscus_maniculatus_bairdii
ENSGAGG00000024547	SMNDC1	100	68.033	ENSPMAG00000007705	smndc1	100	67.220	Petromyzon_marinus
ENSGAGG00000024547	SMNDC1	100	97.899	ENSPCIG00000018419	SMNDC1	100	97.899	Phascolarctos_cinereus
ENSGAGG00000024547	SMNDC1	97	63.043	ENSPCIG00000009693	-	100	63.043	Phascolarctos_cinereus
ENSGAGG00000024547	SMNDC1	100	76.050	ENSPFOG00000017113	smndc1	100	76.050	Poecilia_formosa
ENSGAGG00000024547	SMNDC1	100	76.471	ENSPLAG00000010372	smndc1	100	76.471	Poecilia_latipinna
ENSGAGG00000024547	SMNDC1	100	76.471	ENSPMEG00000012288	smndc1	100	76.471	Poecilia_mexicana
ENSGAGG00000024547	SMNDC1	100	75.630	ENSPREG00000012279	smndc1	100	75.630	Poecilia_reticulata
ENSGAGG00000024547	SMNDC1	100	97.899	ENSPPYG00000002643	SMNDC1	100	97.899	Pongo_abelii
ENSGAGG00000024547	SMNDC1	81	95.855	ENSPCAG00000016183	SMNDC1	100	95.855	Procavia_capensis
ENSGAGG00000024547	SMNDC1	100	97.479	ENSPCOG00000024343	SMNDC1	100	97.479	Propithecus_coquereli
ENSGAGG00000024547	SMNDC1	100	73.950	ENSPVAG00000004368	SMNDC1	100	73.950	Pteropus_vampyrus
ENSGAGG00000024547	SMNDC1	92	70.222	ENSPNYG00000024093	smndc1	98	70.222	Pundamilia_nyererei
ENSGAGG00000024547	SMNDC1	100	77.311	ENSPNAG00000025285	smndc1	100	77.311	Pygocentrus_nattereri
ENSGAGG00000024547	SMNDC1	100	96.639	ENSRNOG00000014833	Smndc1	100	96.639	Rattus_norvegicus
ENSGAGG00000024547	SMNDC1	100	81.513	ENSRBIG00000032452	-	100	81.513	Rhinopithecus_bieti
ENSGAGG00000024547	SMNDC1	100	97.479	ENSRBIG00000000224	-	100	97.479	Rhinopithecus_bieti
ENSGAGG00000024547	SMNDC1	100	81.933	ENSRROG00000039125	-	100	81.933	Rhinopithecus_roxellana
ENSGAGG00000024547	SMNDC1	100	97.899	ENSRROG00000044992	-	100	97.899	Rhinopithecus_roxellana
ENSGAGG00000024547	SMNDC1	100	97.899	ENSSBOG00000026789	SMNDC1	100	97.899	Saimiri_boliviensis_boliviensis
ENSGAGG00000024547	SMNDC1	100	97.899	ENSSHAG00000015189	SMNDC1	100	97.899	Sarcophilus_harrisii
ENSGAGG00000024547	SMNDC1	100	81.092	ENSSFOG00015008311	smndc1	100	81.092	Scleropages_formosus
ENSGAGG00000024547	SMNDC1	100	76.050	ENSSMAG00000020118	smndc1	100	76.050	Scophthalmus_maximus
ENSGAGG00000024547	SMNDC1	100	76.891	ENSSDUG00000015330	smndc1	100	76.891	Seriola_dumerili
ENSGAGG00000024547	SMNDC1	100	76.891	ENSSLDG00000017325	smndc1	100	76.891	Seriola_lalandi_dorsalis
ENSGAGG00000024547	SMNDC1	100	97.059	ENSSARG00000006063	SMNDC1	100	97.059	Sorex_araneus
ENSGAGG00000024547	SMNDC1	100	97.479	ENSSPUG00000004574	SMNDC1	100	97.479	Sphenodon_punctatus
ENSGAGG00000024547	SMNDC1	100	74.790	ENSSPAG00000000338	smndc1	100	74.790	Stegastes_partitus
ENSGAGG00000024547	SMNDC1	100	97.479	ENSSSCG00000030507	SMNDC1	100	97.479	Sus_scrofa
ENSGAGG00000024547	SMNDC1	100	97.479	ENSTGUG00000010599	SMNDC1	100	97.479	Taeniopygia_guttata
ENSGAGG00000024547	SMNDC1	100	74.370	ENSTRUG00000023281	smndc1	100	74.370	Takifugu_rubripes
ENSGAGG00000024547	SMNDC1	100	74.790	ENSTNIG00000013331	smndc1	100	74.790	Tetraodon_nigroviridis
ENSGAGG00000024547	SMNDC1	100	97.479	ENSTBEG00000014337	SMNDC1	100	97.479	Tupaia_belangeri
ENSGAGG00000024547	SMNDC1	100	97.899	ENSUAMG00000008142	SMNDC1	100	97.899	Ursus_americanus
ENSGAGG00000024547	SMNDC1	100	97.899	ENSUMAG00000023722	SMNDC1	100	97.899	Ursus_maritimus
ENSGAGG00000024547	SMNDC1	83	97.980	ENSVPAG00000003402	SMNDC1	100	97.980	Vicugna_pacos
ENSGAGG00000024547	SMNDC1	100	97.899	ENSVVUG00000007820	SMNDC1	100	97.899	Vulpes_vulpes
ENSGAGG00000024547	SMNDC1	60	82.394	ENSXETG00000015415	SMNDC1	100	82.394	Xenopus_tropicalis
ENSGAGG00000024547	SMNDC1	100	75.630	ENSXCOG00000009159	smndc1	100	75.630	Xiphophorus_couchianus
ENSGAGG00000024547	SMNDC1	100	75.210	ENSXMAG00000012755	smndc1	100	75.210	Xiphophorus_maculatus