EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGAGG00000025055 (Gene tree)
Gene ID: -
Gene Symbol: SF3B4
Alias: Hsh49|SAP49|SF3b49
Full Name: splicing factor 3b subunit 4
Gene Type: protein_coding
Species: Gopherus_agassizii
Status: putative
Strand: Minus strand
Length: 10096 bases
Position: chrPPEB01000441.1:128867-138962
Accession: 10771
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAGP00000035250	RRM_1	PF00076.22	5.2e-39	1	2
ENSGAGP00000035250	RRM_1	PF00076.22	5.2e-39	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAGT00000039911	SF3B4-201	1789	-	ENSGAGP00000035250	477 (aa)	-	-

Gene Model

Click here to download ENSGAGG00000025055's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAGG00000025055's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGAGG00000025055	SF3B4	58	39.344	ENSGAGG00000000869	PABPC1	57	39.344
ENSGAGG00000025055	SF3B4	70	41.530	ENSGAGG00000001888	PABPC4	57	41.530

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAGG00000025055	SF3B4	79	90.365	ENSG00000143368	SF3B4	99	97.354	Homo_sapiens
ENSGAGG00000025055	SF3B4	79	90.625	ENSAMEG00000010073	SF3B4	99	85.849	Ailuropoda_melanoleuca
ENSGAGG00000025055	SF3B4	54	89.189	ENSACIG00000018455	sf3b4	63	99.065	Amphilophus_citrinellus
ENSGAGG00000025055	SF3B4	79	90.365	ENSANAG00000031025	SF3B4	99	85.613	Aotus_nancymaae
ENSGAGG00000025055	SF3B4	50	95.781	ENSACLG00000014260	sf3b4	53	100.000	Astatotilapia_calliptera
ENSGAGG00000025055	SF3B4	74	88.827	ENSBTAG00000012793	-	53	95.392	Bos_taurus
ENSGAGG00000025055	SF3B4	79	90.625	ENSBTAG00000012495	SF3B4	99	85.849	Bos_taurus
ENSGAGG00000025055	SF3B4	79	70.787	ENSCJAG00000042351	SF3B4	99	70.787	Callithrix_jacchus
ENSGAGG00000025055	SF3B4	79	90.104	ENSCAFG00000011617	SF3B4	99	85.613	Canis_familiaris
ENSGAGG00000025055	SF3B4	79	90.104	ENSCAFG00020019775	SF3B4	99	85.613	Canis_lupus_dingo
ENSGAGG00000025055	SF3B4	85	55.854	ENSCHIG00000006654	-	50	74.627	Capra_hircus
ENSGAGG00000025055	SF3B4	79	90.625	ENSCHIG00000025663	-	99	85.849	Capra_hircus
ENSGAGG00000025055	SF3B4	79	90.365	ENSTSYG00000009295	SF3B4	99	85.613	Carlito_syrichta
ENSGAGG00000025055	SF3B4	81	76.000	ENSCAPG00000006451	SF3B4	66	100.000	Cavia_aperea
ENSGAGG00000025055	SF3B4	79	90.365	ENSCPOG00000008267	SF3B4	99	85.613	Cavia_porcellus
ENSGAGG00000025055	SF3B4	82	80.510	ENSCCAG00000021751	-	59	95.817	Cebus_capucinus
ENSGAGG00000025055	SF3B4	65	82.484	ENSCCAG00000019823	-	94	74.687	Cebus_capucinus
ENSGAGG00000025055	SF3B4	79	90.365	ENSCATG00000033114	SF3B4	99	85.613	Cercocebus_atys
ENSGAGG00000025055	SF3B4	79	90.365	ENSCLAG00000015851	SF3B4	99	85.613	Chinchilla_lanigera
ENSGAGG00000025055	SF3B4	79	90.365	ENSCSAG00000018129	SF3B4	99	85.613	Chlorocebus_sabaeus
ENSGAGG00000025055	SF3B4	88	99.761	ENSCPBG00000008041	SF3B4	100	99.761	Chrysemys_picta_bellii
ENSGAGG00000025055	SF3B4	79	90.365	ENSCANG00000035579	SF3B4	99	85.613	Colobus_angolensis_palliatus
ENSGAGG00000025055	SF3B4	79	90.365	ENSCGRG00001003590	Sf3b4	99	85.613	Cricetulus_griseus_chok1gshd
ENSGAGG00000025055	SF3B4	79	90.365	ENSCGRG00000016914	Sf3b4	99	85.613	Cricetulus_griseus_crigri
ENSGAGG00000025055	SF3B4	56	87.778	ENSCVAG00000005536	sf3b4	55	100.000	Cyprinodon_variegatus
ENSGAGG00000025055	SF3B4	78	87.234	ENSDNOG00000048908	-	99	82.692	Dasypus_novemcinctus
ENSGAGG00000025055	SF3B4	85	72.881	ENSDNOG00000037231	-	50	87.245	Dasypus_novemcinctus
ENSGAGG00000025055	SF3B4	79	90.625	ENSDORG00000016366	Sf3b4	99	85.849	Dipodomys_ordii
ENSGAGG00000025055	SF3B4	67	83.282	ENSETEG00000008963	SF3B4	62	87.833	Echinops_telfairi
ENSGAGG00000025055	SF3B4	79	90.625	ENSEASG00005001477	SF3B4	99	85.849	Equus_asinus_asinus
ENSGAGG00000025055	SF3B4	79	90.625	ENSECAG00000024737	SF3B4	99	85.849	Equus_caballus
ENSGAGG00000025055	SF3B4	79	90.625	ENSFCAG00000010106	SF3B4	99	85.849	Felis_catus
ENSGAGG00000025055	SF3B4	79	90.365	ENSFDAG00000009286	SF3B4	99	85.613	Fukomys_damarensis
ENSGAGG00000025055	SF3B4	88	96.897	ENSGALG00000013352	SF3B4	100	96.897	Gallus_gallus
ENSGAGG00000025055	SF3B4	56	93.208	ENSGAFG00000010181	sf3b4	54	100.000	Gambusia_affinis
ENSGAGG00000025055	SF3B4	88	68.322	ENSGGOG00000038845	-	55	88.318	Gorilla_gorilla
ENSGAGG00000025055	SF3B4	79	90.365	ENSGGOG00000004761	SF3B4	99	85.613	Gorilla_gorilla
ENSGAGG00000025055	SF3B4	50	95.781	ENSHBUG00000002028	sf3b4	53	100.000	Haplochromis_burtoni
ENSGAGG00000025055	SF3B4	79	90.365	ENSHGLG00000012360	SF3B4	99	85.613	Heterocephalus_glaber_female
ENSGAGG00000025055	SF3B4	79	85.564	ENSHGLG00100008533	SF3B4	58	97.119	Heterocephalus_glaber_male
ENSGAGG00000025055	SF3B4	79	90.625	ENSSTOG00000000684	-	99	85.849	Ictidomys_tridecemlineatus
ENSGAGG00000025055	SF3B4	65	71.491	ENSJJAG00000022500	Sf3b4	69	74.269	Jaculus_jaculus
ENSGAGG00000025055	SF3B4	50	96.203	ENSKMAG00000008154	sf3b4	54	100.000	Kryptolebias_marmoratus
ENSGAGG00000025055	SF3B4	51	97.531	ENSLACG00000004436	SF3B4	67	97.531	Latimeria_chalumnae
ENSGAGG00000025055	SF3B4	51	97.531	ENSLOCG00000009048	sf3b4	58	97.531	Lepisosteus_oculatus
ENSGAGG00000025055	SF3B4	79	91.169	ENSLAFG00000008531	SF3B4	62	96.578	Loxodonta_africana
ENSGAGG00000025055	SF3B4	80	68.063	ENSMFAG00000039067	-	53	80.000	Macaca_fascicularis
ENSGAGG00000025055	SF3B4	79	90.365	ENSMFAG00000042395	SF3B4	99	85.613	Macaca_fascicularis
ENSGAGG00000025055	SF3B4	79	90.365	ENSMMUG00000007256	SF3B4	99	85.613	Macaca_mulatta
ENSGAGG00000025055	SF3B4	79	90.365	ENSMNEG00000031839	SF3B4	99	85.613	Macaca_nemestrina
ENSGAGG00000025055	SF3B4	80	67.539	ENSMNEG00000031526	-	53	79.500	Macaca_nemestrina
ENSGAGG00000025055	SF3B4	79	90.365	ENSMLEG00000038667	SF3B4	99	85.613	Mandrillus_leucophaeus
ENSGAGG00000025055	SF3B4	50	96.203	ENSMAMG00000014692	sf3b4	54	100.000	Mastacembelus_armatus
ENSGAGG00000025055	SF3B4	50	95.781	ENSMZEG00005026741	sf3b4	53	100.000	Maylandia_zebra
ENSGAGG00000025055	SF3B4	88	96.420	ENSMGAG00000000653	SF3B4	100	96.420	Meleagris_gallopavo
ENSGAGG00000025055	SF3B4	79	90.365	ENSMAUG00000015266	Sf3b4	99	85.613	Mesocricetus_auratus
ENSGAGG00000025055	SF3B4	79	90.625	ENSMICG00000044961	SF3B4	99	85.849	Microcebus_murinus
ENSGAGG00000025055	SF3B4	79	90.365	ENSMOCG00000013658	-	99	85.613	Microtus_ochrogaster
ENSGAGG00000025055	SF3B4	81	79.949	ENSMOCG00000014155	-	99	80.861	Microtus_ochrogaster
ENSGAGG00000025055	SF3B4	79	90.885	ENSMODG00000018767	SF3B4	99	86.321	Monodelphis_domestica
ENSGAGG00000025055	SF3B4	79	90.104	MGP_CAROLIEiJ_G0025365	Sf3b4	57	97.119	Mus_caroli
ENSGAGG00000025055	SF3B4	79	90.365	ENSMUSG00000068856	Sf3b4	99	85.613	Mus_musculus
ENSGAGG00000025055	SF3B4	79	90.365	MGP_PahariEiJ_G0026809	Sf3b4	99	85.613	Mus_pahari
ENSGAGG00000025055	SF3B4	79	90.365	MGP_SPRETEiJ_G0026309	Sf3b4	99	85.613	Mus_spretus
ENSGAGG00000025055	SF3B4	79	90.625	ENSMPUG00000005563	SF3B4	99	85.849	Mustela_putorius_furo
ENSGAGG00000025055	SF3B4	79	90.625	ENSMLUG00000010789	SF3B4	99	85.849	Myotis_lucifugus
ENSGAGG00000025055	SF3B4	79	91.146	ENSNGAG00000016337	Sf3b4	99	83.491	Nannospalax_galili
ENSGAGG00000025055	SF3B4	50	96.203	ENSNBRG00000013865	sf3b4	53	100.000	Neolamprologus_brichardi
ENSGAGG00000025055	SF3B4	88	69.976	ENSNLEG00000000537	-	54	90.187	Nomascus_leucogenys
ENSGAGG00000025055	SF3B4	71	100.000	ENSMEUG00000003272	SF3B4	82	100.000	Notamacropus_eugenii
ENSGAGG00000025055	SF3B4	76	65.312	ENSODEG00000008916	-	55	76.415	Octodon_degus
ENSGAGG00000025055	SF3B4	65	79.811	ENSODEG00000003597	-	65	81.818	Octodon_degus
ENSGAGG00000025055	SF3B4	50	95.781	ENSONIG00000002730	sf3b4	53	100.000	Oreochromis_niloticus
ENSGAGG00000025055	SF3B4	87	56.452	ENSOANG00000004768	-	50	81.944	Ornithorhynchus_anatinus
ENSGAGG00000025055	SF3B4	79	90.625	ENSOCUG00000004614	SF3B4	99	85.849	Oryctolagus_cuniculus
ENSGAGG00000025055	SF3B4	79	90.625	ENSOGAG00000006265	SF3B4	99	85.849	Otolemur_garnettii
ENSGAGG00000025055	SF3B4	75	70.248	ENSOARG00000007368	-	51	83.333	Ovis_aries
ENSGAGG00000025055	SF3B4	79	90.625	ENSOARG00000020718	-	99	85.849	Ovis_aries
ENSGAGG00000025055	SF3B4	79	90.365	ENSPPAG00000040904	SF3B4	99	85.613	Pan_paniscus
ENSGAGG00000025055	SF3B4	88	74.468	ENSPPAG00000030024	-	58	87.029	Pan_paniscus
ENSGAGG00000025055	SF3B4	79	90.625	ENSPPRG00000007384	SF3B4	99	85.849	Panthera_pardus
ENSGAGG00000025055	SF3B4	79	90.625	ENSPTIG00000014530	SF3B4	99	85.613	Panthera_tigris_altaica
ENSGAGG00000025055	SF3B4	79	90.365	ENSPTRG00000001243	SF3B4	99	85.613	Pan_troglodytes
ENSGAGG00000025055	SF3B4	88	73.508	ENSPTRG00000049727	-	60	87.448	Pan_troglodytes
ENSGAGG00000025055	SF3B4	79	90.365	ENSPANG00000005126	SF3B4	99	85.613	Papio_anubis
ENSGAGG00000025055	SF3B4	60	84.669	ENSPSIG00000009565	SF3B4	92	84.669	Pelodiscus_sinensis
ENSGAGG00000025055	SF3B4	79	90.365	ENSPEMG00000017568	Sf3b4	99	85.613	Peromyscus_maniculatus_bairdii
ENSGAGG00000025055	SF3B4	54	87.160	ENSPMAG00000007842	-	50	95.327	Petromyzon_marinus
ENSGAGG00000025055	SF3B4	79	90.885	ENSPCIG00000008765	SF3B4	99	86.321	Phascolarctos_cinereus
ENSGAGG00000025055	SF3B4	57	89.706	ENSPFOG00000005754	sf3b4	54	100.000	Poecilia_formosa
ENSGAGG00000025055	SF3B4	57	89.706	ENSPLAG00000001401	sf3b4	59	100.000	Poecilia_latipinna
ENSGAGG00000025055	SF3B4	57	91.852	ENSPREG00000011076	sf3b4	53	100.000	Poecilia_reticulata
ENSGAGG00000025055	SF3B4	79	90.625	ENSPCOG00000015399	SF3B4	99	85.849	Propithecus_coquereli
ENSGAGG00000025055	SF3B4	79	90.625	ENSPVAG00000014171	SF3B4	99	85.849	Pteropus_vampyrus
ENSGAGG00000025055	SF3B4	50	95.781	ENSPNYG00000012700	sf3b4	53	100.000	Pundamilia_nyererei
ENSGAGG00000025055	SF3B4	79	90.365	ENSRNOG00000021181	Sf3b4	99	85.613	Rattus_norvegicus
ENSGAGG00000025055	SF3B4	79	90.365	ENSRBIG00000043392	SF3B4	99	85.613	Rhinopithecus_bieti
ENSGAGG00000025055	SF3B4	81	65.128	ENSRROG00000028213	-	52	75.122	Rhinopithecus_roxellana
ENSGAGG00000025055	SF3B4	79	90.365	ENSRROG00000029366	SF3B4	99	85.613	Rhinopithecus_roxellana
ENSGAGG00000025055	SF3B4	79	90.104	ENSSBOG00000012310	-	99	85.377	Saimiri_boliviensis_boliviensis
ENSGAGG00000025055	SF3B4	79	88.021	ENSSHAG00000004043	SF3B4	99	84.514	Sarcophilus_harrisii
ENSGAGG00000025055	SF3B4	50	97.046	ENSSFOG00015008864	sf3b4	53	100.000	Scleropages_formosus
ENSGAGG00000025055	SF3B4	75	58.380	ENSSSCG00000039440	-	51	64.953	Sus_scrofa
ENSGAGG00000025055	SF3B4	79	91.406	ENSSSCG00000006665	-	99	83.491	Sus_scrofa
ENSGAGG00000025055	SF3B4	79	90.625	ENSTTRG00000005217	SF3B4	99	85.849	Tursiops_truncatus
ENSGAGG00000025055	SF3B4	79	90.625	ENSUAMG00000022468	SF3B4	99	85.849	Ursus_americanus
ENSGAGG00000025055	SF3B4	82	90.127	ENSUMAG00000003802	SF3B4	99	83.255	Ursus_maritimus
ENSGAGG00000025055	SF3B4	77	90.323	ENSVPAG00000008152	SF3B4	99	85.437	Vicugna_pacos
ENSGAGG00000025055	SF3B4	66	90.596	ENSVVUG00000007732	-	100	80.668	Vulpes_vulpes