EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGAGG00000025617 (Gene tree)
Gene ID: -
Gene Symbol: SMG6
Alias: C17orf31|EST1A|KIAA0732|SMG-6
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Gopherus_agassizii
Status: putative
Strand: Minus strand
Length: 146811 bases
Position: chrPPEB01002138.1:12211-159021
Accession: 17809
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGAGP00000036145	EST1	PF10374.9	2.8e-14	1	1
ENSGAGP00000036145	EST1_DNA_bind	PF10373.9	1.5e-58	1	1
ENSGAGP00000036145	PIN_4	PF13638.6	1.8e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGAGT00000040922	SMG6-201	4413	-	ENSGAGP00000036145	1391 (aa)	-	-

Gene Model

Click here to download ENSGAGG00000025617's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGAGG00000025617's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGAGG00000025617	SMG6	100	71.855	ENSG00000070366	SMG6	100	82.387	Homo_sapiens
ENSGAGG00000025617	SMG6	96	49.689	ENSAPOG00000019448	smg6	84	50.310	Acanthochromis_polyacanthus
ENSGAGG00000025617	SMG6	100	72.992	ENSAMEG00000007632	SMG6	98	72.424	Ailuropoda_melanoleuca
ENSGAGG00000025617	SMG6	96	49.416	ENSAOCG00000002630	smg6	84	49.966	Amphiprion_ocellaris
ENSGAGG00000025617	SMG6	89	51.943	ENSAPEG00000019101	smg6	78	52.647	Amphiprion_percula
ENSGAGG00000025617	SMG6	84	54.275	ENSATEG00000006483	smg6	73	54.239	Anabas_testudineus
ENSGAGG00000025617	SMG6	86	61.314	ENSACAG00000011783	SMG6	97	61.924	Anolis_carolinensis
ENSGAGG00000025617	SMG6	100	72.676	ENSANAG00000035760	SMG6	98	72.037	Aotus_nancymaae
ENSGAGG00000025617	SMG6	73	57.798	ENSACLG00000005288	smg6	80	54.052	Astatotilapia_calliptera
ENSGAGG00000025617	SMG6	69	61.780	ENSAMXG00000017326	smg6	98	49.930	Astyanax_mexicanus
ENSGAGG00000025617	SMG6	99	73.557	ENSBTAG00000000267	SMG6	98	73.200	Bos_taurus
ENSGAGG00000025617	SMG6	100	72.281	ENSCJAG00000001820	SMG6	98	71.642	Callithrix_jacchus
ENSGAGG00000025617	SMG6	99	73.219	ENSCAFG00000019260	SMG6	98	72.650	Canis_familiaris
ENSGAGG00000025617	SMG6	99	73.219	ENSCAFG00020009770	SMG6	98	72.650	Canis_lupus_dingo
ENSGAGG00000025617	SMG6	99	72.967	ENSCHIG00000021998	SMG6	98	72.630	Capra_hircus
ENSGAGG00000025617	SMG6	100	71.915	ENSTSYG00000003406	SMG6	100	82.779	Carlito_syrichta
ENSGAGG00000025617	SMG6	91	73.415	ENSCAPG00000016197	SMG6	99	72.902	Cavia_aperea
ENSGAGG00000025617	SMG6	100	71.023	ENSCPOG00000014878	SMG6	98	78.970	Cavia_porcellus
ENSGAGG00000025617	SMG6	100	72.656	ENSCCAG00000035801	SMG6	98	72.017	Cebus_capucinus
ENSGAGG00000025617	SMG6	100	72.411	ENSCATG00000031956	SMG6	98	71.773	Cercocebus_atys
ENSGAGG00000025617	SMG6	100	72.482	ENSCLAG00000006748	SMG6	93	82.883	Chinchilla_lanigera
ENSGAGG00000025617	SMG6	100	72.553	ENSCSAG00000013800	SMG6	98	71.986	Chlorocebus_sabaeus
ENSGAGG00000025617	SMG6	50	86.567	ENSCHOG00000005024	-	63	86.567	Choloepus_hoffmanni
ENSGAGG00000025617	SMG6	100	96.477	ENSCPBG00000020369	SMG6	98	96.477	Chrysemys_picta_bellii
ENSGAGG00000025617	SMG6	100	71.844	ENSCANG00000031764	SMG6	100	82.387	Colobus_angolensis_palliatus
ENSGAGG00000025617	SMG6	54	62.597	ENSCGRG00001019595	Smg6	94	61.558	Cricetulus_griseus_chok1gshd
ENSGAGG00000025617	SMG6	100	66.643	ENSCGRG00000007782	Smg6	100	66.074	Cricetulus_griseus_crigri
ENSGAGG00000025617	SMG6	84	55.270	ENSCSEG00000012757	smg6	78	55.466	Cynoglossus_semilaevis
ENSGAGG00000025617	SMG6	73	56.109	ENSCVAG00000012789	smg6	74	52.853	Cyprinodon_variegatus
ENSGAGG00000025617	SMG6	100	53.344	ENSDARG00000100481	smg6	79	53.917	Danio_rerio
ENSGAGG00000025617	SMG6	100	72.470	ENSDNOG00000048283	SMG6	98	71.904	Dasypus_novemcinctus
ENSGAGG00000025617	SMG6	100	69.073	ENSDORG00000016614	Smg6	94	83.333	Dipodomys_ordii
ENSGAGG00000025617	SMG6	93	90.476	ENSETEG00000016790	SMG6	91	90.476	Echinops_telfairi
ENSGAGG00000025617	SMG6	66	50.941	ENSEBUG00000005059	smg6	60	50.941	Eptatretus_burgeri
ENSGAGG00000025617	SMG6	99	73.448	ENSEASG00005009318	SMG6	97	72.877	Equus_asinus_asinus
ENSGAGG00000025617	SMG6	99	73.305	ENSECAG00000006519	SMG6	97	72.734	Equus_caballus
ENSGAGG00000025617	SMG6	99	62.945	ENSEEUG00000003493	SMG6	98	62.287	Erinaceus_europaeus
ENSGAGG00000025617	SMG6	73	59.141	ENSELUG00000005934	smg6	67	56.349	Esox_lucius
ENSGAGG00000025617	SMG6	99	73.006	ENSFCAG00000028817	SMG6	98	72.436	Felis_catus
ENSGAGG00000025617	SMG6	100	82.556	ENSFALG00000006538	SMG6	100	82.915	Ficedula_albicollis
ENSGAGG00000025617	SMG6	100	72.475	ENSFDAG00000015106	SMG6	100	76.735	Fukomys_damarensis
ENSGAGG00000025617	SMG6	88	51.208	ENSFHEG00000013282	smg6	78	51.550	Fundulus_heteroclitus
ENSGAGG00000025617	SMG6	53	66.509	ENSGMOG00000019077	smg6	58	66.509	Gadus_morhua
ENSGAGG00000025617	SMG6	100	81.877	ENSGALG00000003108	SMG6	96	82.013	Gallus_gallus
ENSGAGG00000025617	SMG6	84	53.742	ENSGAFG00000000379	smg6	74	54.140	Gambusia_affinis
ENSGAGG00000025617	SMG6	92	52.135	ENSGACG00000020521	smg6	99	52.437	Gasterosteus_aculeatus
ENSGAGG00000025617	SMG6	100	72.546	ENSGGOG00000017156	SMG6	98	71.906	Gorilla_gorilla
ENSGAGG00000025617	SMG6	73	58.188	ENSHBUG00000021311	smg6	74	54.389	Haplochromis_burtoni
ENSGAGG00000025617	SMG6	100	71.824	ENSHGLG00000012882	SMG6	94	82.063	Heterocephalus_glaber_female
ENSGAGG00000025617	SMG6	100	71.824	ENSHGLG00100017815	SMG6	94	82.063	Heterocephalus_glaber_male
ENSGAGG00000025617	SMG6	73	56.788	ENSHCOG00000008761	smg6	83	56.734	Hippocampus_comes
ENSGAGG00000025617	SMG6	86	54.290	ENSIPUG00000012493	smg6	77	54.602	Ictalurus_punctatus
ENSGAGG00000025617	SMG6	100	72.850	ENSSTOG00000028127	SMG6	94	83.408	Ictidomys_tridecemlineatus
ENSGAGG00000025617	SMG6	79	68.321	ENSJJAG00000015367	Smg6	93	66.345	Jaculus_jaculus
ENSGAGG00000025617	SMG6	84	53.569	ENSKMAG00000000279	smg6	75	53.882	Kryptolebias_marmoratus
ENSGAGG00000025617	SMG6	84	53.381	ENSLBEG00000002184	smg6	74	53.176	Labrus_bergylta
ENSGAGG00000025617	SMG6	57	57.195	ENSLACG00000000806	-	98	56.936	Latimeria_chalumnae
ENSGAGG00000025617	SMG6	74	64.640	ENSLOCG00000006448	smg6	99	55.563	Lepisosteus_oculatus
ENSGAGG00000025617	SMG6	100	71.997	ENSLAFG00000001261	SMG6	98	71.429	Loxodonta_africana
ENSGAGG00000025617	SMG6	100	72.624	ENSMFAG00000003394	SMG6	98	72.057	Macaca_fascicularis
ENSGAGG00000025617	SMG6	100	72.482	ENSMMUG00000023161	SMG6	98	71.915	Macaca_mulatta
ENSGAGG00000025617	SMG6	100	69.171	ENSMNEG00000044592	SMG6	98	68.604	Macaca_nemestrina
ENSGAGG00000025617	SMG6	95	83.083	ENSMLEG00000029353	SMG6	99	83.083	Mandrillus_leucophaeus
ENSGAGG00000025617	SMG6	90	52.485	ENSMAMG00000020119	smg6	85	52.632	Mastacembelus_armatus
ENSGAGG00000025617	SMG6	73	58.059	ENSMZEG00005024736	smg6	74	54.308	Maylandia_zebra
ENSGAGG00000025617	SMG6	74	77.563	ENSMGAG00000005401	-	97	77.853	Meleagris_gallopavo
ENSGAGG00000025617	SMG6	100	73.205	ENSMICG00000012913	SMG6	98	72.637	Microcebus_murinus
ENSGAGG00000025617	SMG6	73	58.395	ENSMMOG00000010883	smg6	68	58.672	Mola_mola
ENSGAGG00000025617	SMG6	100	73.362	ENSMODG00000010622	SMG6	98	72.792	Monodelphis_domestica
ENSGAGG00000025617	SMG6	85	52.832	ENSMALG00000001106	smg6	74	53.483	Monopterus_albus
ENSGAGG00000025617	SMG6	100	71.926	MGP_CAROLIEiJ_G0016729	Smg6	98	82.421	Mus_caroli
ENSGAGG00000025617	SMG6	100	71.784	ENSMUSG00000038290	Smg6	97	81.844	Mus_musculus
ENSGAGG00000025617	SMG6	100	71.246	MGP_PahariEiJ_G0017866	Smg6	98	80.980	Mus_pahari
ENSGAGG00000025617	SMG6	100	71.855	MGP_SPRETEiJ_G0017572	Smg6	98	82.133	Mus_spretus
ENSGAGG00000025617	SMG6	99	73.291	ENSMPUG00000013046	SMG6	98	72.721	Mustela_putorius_furo
ENSGAGG00000025617	SMG6	99	72.662	ENSMLUG00000005739	SMG6	98	72.091	Myotis_lucifugus
ENSGAGG00000025617	SMG6	100	72.281	ENSNGAG00000007287	Smg6	94	82.063	Nannospalax_galili
ENSGAGG00000025617	SMG6	73	58.356	ENSNBRG00000009511	smg6	81	53.365	Neolamprologus_brichardi
ENSGAGG00000025617	SMG6	100	72.210	ENSNLEG00000017171	SMG6	100	82.387	Nomascus_leucogenys
ENSGAGG00000025617	SMG6	100	70.655	ENSMEUG00000015804	SMG6	99	70.014	Notamacropus_eugenii
ENSGAGG00000025617	SMG6	63	76.923	ENSOPRG00000000579	SMG6	91	73.303	Ochotona_princeps
ENSGAGG00000025617	SMG6	100	65.415	ENSODEG00000008038	SMG6	98	64.848	Octodon_degus
ENSGAGG00000025617	SMG6	99	50.204	ENSONIG00000005594	smg6	97	50.853	Oreochromis_niloticus
ENSGAGG00000025617	SMG6	100	72.321	ENSOCUG00000013018	SMG6	98	71.773	Oryctolagus_cuniculus
ENSGAGG00000025617	SMG6	89	51.735	ENSORLG00000003317	smg6	77	52.039	Oryzias_latipes
ENSGAGG00000025617	SMG6	89	51.577	ENSORLG00020015343	smg6	76	51.776	Oryzias_latipes_hni
ENSGAGG00000025617	SMG6	89	51.278	ENSORLG00015020454	smg6	77	51.620	Oryzias_latipes_hsok
ENSGAGG00000025617	SMG6	84	52.184	ENSOMEG00000010838	smg6	75	52.913	Oryzias_melastigma
ENSGAGG00000025617	SMG6	100	72.360	ENSOGAG00000004483	SMG6	98	71.793	Otolemur_garnettii
ENSGAGG00000025617	SMG6	100	72.740	ENSOARG00000015076	SMG6	100	72.559	Ovis_aries
ENSGAGG00000025617	SMG6	100	72.353	ENSPPAG00000043296	SMG6	98	71.784	Pan_paniscus
ENSGAGG00000025617	SMG6	99	73.077	ENSPPRG00000014581	SMG6	98	72.507	Panthera_pardus
ENSGAGG00000025617	SMG6	99	73.077	ENSPTIG00000008925	SMG6	100	83.366	Panthera_tigris_altaica
ENSGAGG00000025617	SMG6	100	72.353	ENSPTRG00000008544	SMG6	100	82.387	Pan_troglodytes
ENSGAGG00000025617	SMG6	100	72.566	ENSPANG00000024588	SMG6	98	71.997	Papio_anubis
ENSGAGG00000025617	SMG6	91	90.310	ENSPSIG00000006660	SMG6	96	90.310	Pelodiscus_sinensis
ENSGAGG00000025617	SMG6	98	58.809	ENSPMGG00000000844	smg6	98	58.809	Periophthalmus_magnuspinnatus
ENSGAGG00000025617	SMG6	100	72.139	ENSPEMG00000020707	Smg6	98	80.349	Peromyscus_maniculatus_bairdii
ENSGAGG00000025617	SMG6	92	52.990	ENSPFOG00000012035	smg6	90	52.655	Poecilia_formosa
ENSGAGG00000025617	SMG6	84	53.711	ENSPLAG00000017660	smg6	74	53.551	Poecilia_latipinna
ENSGAGG00000025617	SMG6	84	53.693	ENSPMEG00000000258	smg6	74	53.865	Poecilia_mexicana
ENSGAGG00000025617	SMG6	84	54.140	ENSPREG00000010066	smg6	74	53.773	Poecilia_reticulata
ENSGAGG00000025617	SMG6	100	66.950	ENSPPYG00000007790	SMG6	98	66.313	Pongo_abelii
ENSGAGG00000025617	SMG6	96	85.122	ENSPCAG00000000552	SMG6	98	69.225	Procavia_capensis
ENSGAGG00000025617	SMG6	100	72.921	ENSPCOG00000020925	SMG6	98	72.353	Propithecus_coquereli
ENSGAGG00000025617	SMG6	85	74.202	ENSPVAG00000002159	SMG6	84	73.613	Pteropus_vampyrus
ENSGAGG00000025617	SMG6	73	59.734	ENSPNYG00000024151	smg6	81	53.737	Pundamilia_nyererei
ENSGAGG00000025617	SMG6	85	50.195	ENSPNAG00000015480	smg6	77	50.786	Pygocentrus_nattereri
ENSGAGG00000025617	SMG6	100	71.673	ENSRNOG00000003041	Smg6	97	82.133	Rattus_norvegicus
ENSGAGG00000025617	SMG6	100	72.128	ENSRBIG00000024746	SMG6	98	71.560	Rhinopithecus_bieti
ENSGAGG00000025617	SMG6	100	71.986	ENSRROG00000030423	SMG6	100	82.192	Rhinopithecus_roxellana
ENSGAGG00000025617	SMG6	100	72.850	ENSSBOG00000022518	SMG6	98	70.718	Saimiri_boliviensis_boliviensis
ENSGAGG00000025617	SMG6	100	73.632	ENSSHAG00000010045	SMG6	98	72.992	Sarcophilus_harrisii
ENSGAGG00000025617	SMG6	84	56.038	ENSSFOG00015005436	smg6	70	57.177	Scleropages_formosus
ENSGAGG00000025617	SMG6	88	51.775	ENSSMAG00000019777	smg6	73	53.798	Scophthalmus_maximus
ENSGAGG00000025617	SMG6	84	54.016	ENSSDUG00000016412	smg6	74	54.283	Seriola_dumerili
ENSGAGG00000025617	SMG6	86	51.020	ENSSLDG00000020747	smg6	83	51.309	Seriola_lalandi_dorsalis
ENSGAGG00000025617	SMG6	99	78.255	ENSSPUG00000007152	SMG6	98	78.255	Sphenodon_punctatus
ENSGAGG00000025617	SMG6	85	53.079	ENSSPAG00000015633	smg6	75	53.685	Stegastes_partitus
ENSGAGG00000025617	SMG6	99	73.200	ENSSSCG00000017826	SMG6	99	71.697	Sus_scrofa
ENSGAGG00000025617	SMG6	100	80.888	ENSTGUG00000005836	SMG6	98	80.888	Taeniopygia_guttata
ENSGAGG00000025617	SMG6	89	52.716	ENSTRUG00000000358	smg6	86	52.716	Takifugu_rubripes
ENSGAGG00000025617	SMG6	99	49.221	ENSTNIG00000016164	smg6	94	50.959	Tetraodon_nigroviridis
ENSGAGG00000025617	SMG6	100	69.615	ENSTBEG00000011424	SMG6	98	69.044	Tupaia_belangeri
ENSGAGG00000025617	SMG6	90	78.852	ENSTTRG00000001175	SMG6	89	78.939	Tursiops_truncatus
ENSGAGG00000025617	SMG6	99	72.992	ENSUAMG00000025152	SMG6	100	72.424	Ursus_americanus
ENSGAGG00000025617	SMG6	99	73.291	ENSUMAG00000009306	SMG6	100	72.721	Ursus_maritimus
ENSGAGG00000025617	SMG6	84	96.296	ENSVPAG00000000225	SMG6	85	96.296	Vicugna_pacos
ENSGAGG00000025617	SMG6	99	73.006	ENSVVUG00000021727	SMG6	99	71.685	Vulpes_vulpes
ENSGAGG00000025617	SMG6	100	57.703	ENSXETG00000023799	SMG6	99	57.987	Xenopus_tropicalis
ENSGAGG00000025617	SMG6	84	54.708	ENSXCOG00000009867	smg6	74	54.553	Xiphophorus_couchianus
ENSGAGG00000025617	SMG6	85	53.443	ENSXMAG00000010321	smg6	75	53.281	Xiphophorus_maculatus