EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSGALG00000001283 (Gene tree)
Gene ID: 428216
Gene Symbol: SRRM1
Alias: -
Full Name: Gallus gallus serine and arginine repetitive matrix 1 (SRRM1)%2C mRNA.
Gene Type: protein_coding
Species: Gallus_gallus
Status: putative
Strand: Minus strand
Length: 16740 bases
Position: chr23:2679438-2696177
Accession: NM_001031494
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGALP00000053894	PWI	PF01480.17	5.8e-30	1	1
ENSGALP00000001957	PWI	PF01480.17	6e-30	1	1
ENSGALP00000065298	PWI	PF01480.17	6.1e-30	1	1
ENSGALP00000055309	PWI	PF01480.17	6.3e-30	1	1
ENSGALP00000068590	PWI	PF01480.17	4e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGALT00000098032	-	575	-	ENSGALP00000068590	79 (aa)	-	UPI00001F177E
ENSGALT00000099149	-	3612	XM_015297687	ENSGALP00000065298	902 (aa)	XP_015153173	UPI000739ADF2
ENSGALT00000068463	-	2974	-	ENSGALP00000055309	924 (aa)	-	A0A1D5PQY8
ENSGALT00000001959	-	3582	XM_015297691	ENSGALP00000001957	888 (aa)	XP_015153177	E1BQL2
ENSGALT00000065217	-	2641	-	ENSGALP00000053894	851 (aa)	-	A0A1D5PM21

Gene Model

Click here to download ENSGALG00000001283's gene model file

Pathways

Pathway ID	Pathway Name	Source
gga03013	RNA transport	KEGG
gga03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSGALG00000001283's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGALG00000001283	SRRM1	100	100.000	ENSG00000133226	SRRM1	100	100.000	Homo_sapiens
ENSGALG00000001283	SRRM1	99	94.872	ENSACIG00000023398	-	64	90.968	Amphilophus_citrinellus
ENSGALG00000001283	SRRM1	99	94.872	ENSACLG00000019786	-	65	90.323	Astatotilapia_calliptera
ENSGALG00000001283	SRRM1	99	94.872	ENSAMXG00000040320	-	99	73.140	Astyanax_mexicanus
ENSGALG00000001283	SRRM1	96	98.684	ENSCHIG00000021159	-	54	98.684	Capra_hircus
ENSGALG00000001283	SRRM1	99	100.000	ENSCCAG00000029474	SRRM1	50	90.038	Cebus_capucinus
ENSGALG00000001283	SRRM1	99	100.000	ENSCPBG00000025083	SRRM1	75	92.342	Chrysemys_picta_bellii
ENSGALG00000001283	SRRM1	96	72.368	ENSCING00000022242	-	94	66.443	Ciona_intestinalis
ENSGALG00000001283	SRRM1	96	77.632	ENSCSAVG00000003919	-	67	72.263	Ciona_savignyi
ENSGALG00000001283	SRRM1	99	93.590	ENSCVAG00000000504	-	67	93.590	Cyprinodon_variegatus
ENSGALG00000001283	SRRM1	99	100.000	ENSDORG00000028601	-	100	76.211	Dipodomys_ordii
ENSGALG00000001283	SRRM1	53	71.429	ENSEBUG00000002653	-	81	73.554	Eptatretus_burgeri
ENSGALG00000001283	SRRM1	99	100.000	ENSEEUG00000013830	SRRM1	55	97.143	Erinaceus_europaeus
ENSGALG00000001283	SRRM1	99	83.333	ENSFCAG00000044640	-	73	83.750	Felis_catus
ENSGALG00000001283	SRRM1	99	97.436	ENSFCAG00000034671	-	90	78.846	Felis_catus
ENSGALG00000001283	SRRM1	90	100.000	ENSFALG00000000476	SRRM1	100	100.000	Ficedula_albicollis
ENSGALG00000001283	SRRM1	99	93.590	ENSFHEG00000007359	-	83	91.358	Fundulus_heteroclitus
ENSGALG00000001283	SRRM1	99	94.872	ENSGAFG00000019431	-	93	64.062	Gambusia_affinis
ENSGALG00000001283	SRRM1	100	94.937	ENSHBUG00000020354	-	100	94.937	Haplochromis_burtoni
ENSGALG00000001283	SRRM1	99	84.615	ENSHGLG00100017918	-	100	89.552	Heterocephalus_glaber_male
ENSGALG00000001283	SRRM1	99	79.487	ENSHGLG00100010430	-	99	78.750	Heterocephalus_glaber_male
ENSGALG00000001283	SRRM1	100	93.671	ENSKMAG00000013810	-	88	93.671	Kryptolebias_marmoratus
ENSGALG00000001283	SRRM1	99	94.872	ENSMZEG00005006344	-	65	90.323	Maylandia_zebra
ENSGALG00000001283	SRRM1	99	99.546	ENSMGAG00000002060	SRRM1	100	99.546	Meleagris_gallopavo
ENSGALG00000001283	SRRM1	99	94.872	ENSMMOG00000002390	-	77	94.872	Mola_mola
ENSGALG00000001283	SRRM1	99	100.000	ENSMODG00000013861	SRRM1	63	89.098	Monodelphis_domestica
ENSGALG00000001283	SRRM1	99	73.171	ENSMALG00000010813	-	67	74.847	Monopterus_albus
ENSGALG00000001283	SRRM1	99	100.000	MGP_CAROLIEiJ_G0026636	Srrm1	100	79.736	Mus_caroli
ENSGALG00000001283	SRRM1	99	100.000	ENSMUSG00000028809	Srrm1	100	79.736	Mus_musculus
ENSGALG00000001283	SRRM1	99	100.000	MGP_PahariEiJ_G0028969	Srrm1	100	79.736	Mus_pahari
ENSGALG00000001283	SRRM1	99	100.000	MGP_SPRETEiJ_G0027616	Srrm1	100	79.736	Mus_spretus
ENSGALG00000001283	SRRM1	99	100.000	ENSMPUG00000015831	-	99	80.335	Mustela_putorius_furo
ENSGALG00000001283	SRRM1	99	94.872	ENSNBRG00000010911	-	63	90.323	Neolamprologus_brichardi
ENSGALG00000001283	SRRM1	99	100.000	ENSNLEG00000008966	SRRM1	50	90.602	Nomascus_leucogenys
ENSGALG00000001283	SRRM1	96	93.421	ENSODEG00000007221	-	99	93.421	Octodon_degus
ENSGALG00000001283	SRRM1	99	89.744	ENSODEG00000002361	-	100	89.744	Octodon_degus
ENSGALG00000001283	SRRM1	99	96.154	ENSODEG00000019473	-	100	96.154	Octodon_degus
ENSGALG00000001283	SRRM1	99	94.872	ENSORLG00000017510	-	67	85.976	Oryzias_latipes
ENSGALG00000001283	SRRM1	100	94.937	ENSORLG00020018419	-	100	94.937	Oryzias_latipes_hni
ENSGALG00000001283	SRRM1	90	88.732	ENSPTIG00000022093	-	72	89.041	Panthera_tigris_altaica
ENSGALG00000001283	SRRM1	85	78.342	ENSPSIG00000013119	SRRM1	58	92.194	Pelodiscus_sinensis
ENSGALG00000001283	SRRM1	100	91.139	ENSPMGG00000009036	-	73	92.308	Periophthalmus_magnuspinnatus
ENSGALG00000001283	SRRM1	100	94.937	ENSPMEG00000011776	-	100	94.937	Poecilia_mexicana
ENSGALG00000001283	SRRM1	100	94.937	ENSPMEG00000002615	-	100	94.937	Poecilia_mexicana
ENSGALG00000001283	SRRM1	52	88.757	ENSPCAG00000015138	SRRM1	54	86.702	Procavia_capensis
ENSGALG00000001283	SRRM1	99	94.872	ENSPNYG00000005058	-	65	90.323	Pundamilia_nyererei
ENSGALG00000001283	SRRM1	99	93.590	ENSPNAG00000005888	-	75	93.590	Pygocentrus_nattereri
ENSGALG00000001283	SRRM1	70	81.818	ENSRROG00000041543	-	53	65.873	Rhinopithecus_roxellana
ENSGALG00000001283	SRRM1	100	100.000	ENSSBOG00000019884	SRRM1	100	100.000	Saimiri_boliviensis_boliviensis
ENSGALG00000001283	SRRM1	99	93.590	ENSSMAG00000009318	-	58	91.912	Scophthalmus_maximus
ENSGALG00000001283	SRRM1	99	100.000	ENSTGUG00000001135	SRRM1	100	95.077	Taeniopygia_guttata
ENSGALG00000001283	SRRM1	91	98.611	ENSTGUG00000016669	-	99	100.000	Taeniopygia_guttata
ENSGALG00000001283	SRRM1	90	100.000	ENSTTRG00000009365	SRRM1	60	84.799	Tursiops_truncatus
ENSGALG00000001283	SRRM1	100	98.734	ENSUAMG00000011740	-	87	100.000	Ursus_americanus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005634	nucleus	-	IEA	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0008380	RNA splicing	-	IEA	Process