EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSGALG00000002087 (Gene tree)
Gene ID: 427379
Gene Symbol: NCBP1
Alias: -
Full Name: Gallus gallus nuclear cap binding protein subunit 1 (NCBP1)%2C mRNA.
Gene Type: protein_coding
Species: Gallus_gallus
Status: putative
Strand: Minus strand
Length: 31985 bases
Position: chrZ:70943793-70975777
Accession: NM_001031440
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGALP00000003250	MIF4G_like	PF09088.11	1.5e-36	1	1
ENSGALP00000003250	MIF4G_like_2	PF09090.11	1.1e-85	1	1
ENSGALP00000003250	MIF4G	PF02854.19	3.3e-27	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGALT00000003255	-	4046	-	ENSGALP00000003250	793 (aa)	-	Q5ZJZ6

Gene Model

Click here to download ENSGALG00000002087's gene model file

Pathways

Pathway ID	Pathway Name	Source
gga03013	RNA transport	KEGG
gga03015	mRNA surveillance pathway	KEGG
gga03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSGALG00000002087's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGALG00000002087	NCBP1	100	90.290	ENSG00000136937	NCBP1	98	90.629	Homo_sapiens
ENSGALG00000002087	NCBP1	99	84.799	ENSAPOG00000008002	NCBP1	98	84.910	Acanthochromis_polyacanthus
ENSGALG00000002087	NCBP1	100	90.290	ENSAMEG00000004763	NCBP1	98	90.629	Ailuropoda_melanoleuca
ENSGALG00000002087	NCBP1	99	84.403	ENSACIG00000000274	NCBP1	98	84.763	Amphilophus_citrinellus
ENSGALG00000002087	NCBP1	99	84.925	ENSAOCG00000021148	NCBP1	98	85.038	Amphiprion_ocellaris
ENSGALG00000002087	NCBP1	99	84.925	ENSAPEG00000001701	NCBP1	98	85.038	Amphiprion_percula
ENSGALG00000002087	NCBP1	99	84.296	ENSATEG00000006929	NCBP1	98	84.527	Anabas_testudineus
ENSGALG00000002087	NCBP1	95	98.547	ENSAPLG00000016318	NCBP1	100	98.547	Anas_platyrhynchos
ENSGALG00000002087	NCBP1	100	91.034	ENSACAG00000004409	NCBP1	86	91.381	Anolis_carolinensis
ENSGALG00000002087	NCBP1	100	88.050	ENSANAG00000025744	NCBP1	99	90.720	Aotus_nancymaae
ENSGALG00000002087	NCBP1	99	84.171	ENSACLG00000014812	NCBP1	99	83.426	Astatotilapia_calliptera
ENSGALG00000002087	NCBP1	99	83.584	ENSAMXG00000016364	NCBP1	98	83.673	Astyanax_mexicanus
ENSGALG00000002087	NCBP1	100	90.038	ENSBTAG00000009732	NCBP1	98	90.372	Bos_taurus
ENSGALG00000002087	NCBP1	99	34.563	WBGene00018156	ncbp-1	98	34.171	Caenorhabditis_elegans
ENSGALG00000002087	NCBP1	100	90.416	ENSCJAG00000010840	NCBP1	99	90.859	Callithrix_jacchus
ENSGALG00000002087	NCBP1	100	90.290	ENSCAFG00000002445	NCBP1	98	90.629	Canis_familiaris
ENSGALG00000002087	NCBP1	98	90.757	ENSCAFG00020017997	NCBP1	100	91.082	Canis_lupus_dingo
ENSGALG00000002087	NCBP1	100	89.786	ENSCHIG00000020139	NCBP1	98	90.116	Capra_hircus
ENSGALG00000002087	NCBP1	51	92.269	ENSTSYG00000011914	NCBP1	98	92.163	Carlito_syrichta
ENSGALG00000002087	NCBP1	81	81.747	ENSCAPG00000014252	NCBP1	90	81.747	Cavia_aperea
ENSGALG00000002087	NCBP1	95	90.716	ENSCPOG00000012573	NCBP1	99	90.584	Cavia_porcellus
ENSGALG00000002087	NCBP1	100	90.290	ENSCCAG00000032297	NCBP1	99	90.629	Cebus_capucinus
ENSGALG00000002087	NCBP1	100	90.290	ENSCATG00000010052	NCBP1	99	91.323	Cercocebus_atys
ENSGALG00000002087	NCBP1	100	90.416	ENSCLAG00000014339	NCBP1	98	90.757	Chinchilla_lanigera
ENSGALG00000002087	NCBP1	100	90.290	ENSCSAG00000010929	NCBP1	98	90.629	Chlorocebus_sabaeus
ENSGALG00000002087	NCBP1	90	87.850	ENSCHOG00000010332	NCBP1	88	87.850	Choloepus_hoffmanni
ENSGALG00000002087	NCBP1	100	90.213	ENSCPBG00000024344	NCBP1	99	95.179	Chrysemys_picta_bellii
ENSGALG00000002087	NCBP1	99	53.827	ENSCING00000008990	-	98	54.140	Ciona_intestinalis
ENSGALG00000002087	NCBP1	99	52.677	ENSCSAVG00000005300	-	99	53.403	Ciona_savignyi
ENSGALG00000002087	NCBP1	100	90.290	ENSCANG00000036913	NCBP1	99	90.720	Colobus_angolensis_palliatus
ENSGALG00000002087	NCBP1	100	89.660	ENSCGRG00001015771	Ncbp1	98	90.116	Cricetulus_griseus_chok1gshd
ENSGALG00000002087	NCBP1	98	90.244	ENSCGRG00000010311	Ncbp1	99	90.116	Cricetulus_griseus_crigri
ENSGALG00000002087	NCBP1	99	84.045	ENSCSEG00000012377	NCBP1	99	83.520	Cynoglossus_semilaevis
ENSGALG00000002087	NCBP1	99	82.183	ENSCVAG00000008795	NCBP1	98	82.886	Cyprinodon_variegatus
ENSGALG00000002087	NCBP1	100	89.660	ENSDNOG00000006885	NCBP1	100	90.351	Dasypus_novemcinctus
ENSGALG00000002087	NCBP1	100	85.822	ENSDORG00000013652	Ncbp1	98	86.079	Dipodomys_ordii
ENSGALG00000002087	NCBP1	82	33.432	FBgn0038887	CG7907	86	32.885	Drosophila_melanogaster
ENSGALG00000002087	NCBP1	100	56.824	FBgn0022942	Cbp80	98	57.673	Drosophila_melanogaster
ENSGALG00000002087	NCBP1	89	85.403	ENSETEG00000009705	NCBP1	87	85.185	Echinops_telfairi
ENSGALG00000002087	NCBP1	100	74.340	ENSEBUG00000008386	NCBP1	98	74.392	Eptatretus_burgeri
ENSGALG00000002087	NCBP1	100	89.786	ENSEASG00005022795	NCBP1	98	90.116	Equus_asinus_asinus
ENSGALG00000002087	NCBP1	100	89.912	ENSECAG00000013847	NCBP1	98	90.244	Equus_caballus
ENSGALG00000002087	NCBP1	95	84.524	ENSEEUG00000015973	NCBP1	98	84.771	Erinaceus_europaeus
ENSGALG00000002087	NCBP1	99	82.058	ENSELUG00000022519	NCBP1	98	82.759	Esox_lucius
ENSGALG00000002087	NCBP1	100	90.164	ENSFCAG00000001206	NCBP1	98	90.501	Felis_catus
ENSGALG00000002087	NCBP1	98	98.346	ENSFALG00000001193	NCBP1	100	98.346	Ficedula_albicollis
ENSGALG00000002087	NCBP1	100	90.290	ENSFDAG00000010864	NCBP1	99	90.629	Fukomys_damarensis
ENSGALG00000002087	NCBP1	99	83.187	ENSFHEG00000000655	NCBP1	98	83.269	Fundulus_heteroclitus
ENSGALG00000002087	NCBP1	99	82.309	ENSGMOG00000008653	NCBP1	98	81.992	Gadus_morhua
ENSGALG00000002087	NCBP1	99	83.563	ENSGAFG00000017787	NCBP1	98	83.653	Gambusia_affinis
ENSGALG00000002087	NCBP1	99	82.206	ENSGACG00000016772	NCBP1	97	82.398	Gasterosteus_aculeatus
ENSGALG00000002087	NCBP1	98	95.275	ENSGAGG00000019483	NCBP1	99	94.766	Gopherus_agassizii
ENSGALG00000002087	NCBP1	100	90.290	ENSGGOG00000001376	NCBP1	99	90.720	Gorilla_gorilla
ENSGALG00000002087	NCBP1	99	84.171	ENSHBUG00000020843	NCBP1	98	84.399	Haplochromis_burtoni
ENSGALG00000002087	NCBP1	100	78.994	ENSHGLG00000018112	-	98	79.385	Heterocephalus_glaber_female
ENSGALG00000002087	NCBP1	100	90.290	ENSHGLG00000001882	NCBP1	98	90.629	Heterocephalus_glaber_female
ENSGALG00000002087	NCBP1	100	78.742	ENSHGLG00100017373	-	98	79.129	Heterocephalus_glaber_male
ENSGALG00000002087	NCBP1	100	90.290	ENSHGLG00100013014	NCBP1	98	90.629	Heterocephalus_glaber_male
ENSGALG00000002087	NCBP1	77	74.351	ENSHCOG00000000204	NCBP1	91	74.188	Hippocampus_comes
ENSGALG00000002087	NCBP1	99	83.187	ENSIPUG00000007275	ncbp1	98	83.269	Ictalurus_punctatus
ENSGALG00000002087	NCBP1	100	90.290	ENSSTOG00000002695	NCBP1	98	90.629	Ictidomys_tridecemlineatus
ENSGALG00000002087	NCBP1	99	83.417	ENSKMAG00000003594	NCBP1	96	87.265	Kryptolebias_marmoratus
ENSGALG00000002087	NCBP1	99	82.156	ENSLBEG00000011661	NCBP1	98	82.346	Labrus_bergylta
ENSGALG00000002087	NCBP1	100	81.219	ENSLACG00000013955	NCBP1	98	82.152	Latimeria_chalumnae
ENSGALG00000002087	NCBP1	99	73.259	ENSLOCG00000009579	NCBP1	98	73.291	Lepisosteus_oculatus
ENSGALG00000002087	NCBP1	100	89.912	ENSLAFG00000005999	NCBP1	98	90.244	Loxodonta_africana
ENSGALG00000002087	NCBP1	100	90.290	ENSMFAG00000030994	NCBP1	99	91.323	Macaca_fascicularis
ENSGALG00000002087	NCBP1	98	90.757	ENSMMUG00000012281	NCBP1	99	91.323	Macaca_mulatta
ENSGALG00000002087	NCBP1	100	90.290	ENSMNEG00000042790	NCBP1	98	90.629	Macaca_nemestrina
ENSGALG00000002087	NCBP1	100	90.290	ENSMLEG00000030374	NCBP1	99	90.720	Mandrillus_leucophaeus
ENSGALG00000002087	NCBP1	99	84.548	ENSMAMG00000014806	NCBP1	99	84.655	Mastacembelus_armatus
ENSGALG00000002087	NCBP1	97	83.615	ENSMZEG00005009290	-	99	83.636	Maylandia_zebra
ENSGALG00000002087	NCBP1	99	84.171	ENSMZEG00005003469	NCBP1	98	84.399	Maylandia_zebra
ENSGALG00000002087	NCBP1	99	89.581	ENSMAUG00000020583	Ncbp1	99	90.116	Mesocricetus_auratus
ENSGALG00000002087	NCBP1	100	89.786	ENSMICG00000012682	NCBP1	99	90.116	Microcebus_murinus
ENSGALG00000002087	NCBP1	100	89.281	ENSMOCG00000015818	Ncbp1	98	89.730	Microtus_ochrogaster
ENSGALG00000002087	NCBP1	90	82.402	ENSMMOG00000002610	NCBP1	99	82.427	Mola_mola
ENSGALG00000002087	NCBP1	100	89.155	ENSMODG00000003202	NCBP1	97	89.589	Monodelphis_domestica
ENSGALG00000002087	NCBP1	99	83.291	ENSMALG00000003547	NCBP1	98	83.504	Monopterus_albus
ENSGALG00000002087	NCBP1	100	89.533	MGP_CAROLIEiJ_G0025982	Ncbp1	98	89.987	Mus_caroli
ENSGALG00000002087	NCBP1	100	89.533	ENSMUSG00000028330	Ncbp1	98	89.987	Mus_musculus
ENSGALG00000002087	NCBP1	100	89.786	MGP_PahariEiJ_G0028318	Ncbp1	98	90.244	Mus_pahari
ENSGALG00000002087	NCBP1	100	89.533	MGP_SPRETEiJ_G0026945	Ncbp1	98	89.987	Mus_spretus
ENSGALG00000002087	NCBP1	100	90.164	ENSMPUG00000006399	NCBP1	98	90.501	Mustela_putorius_furo
ENSGALG00000002087	NCBP1	98	89.474	ENSMLUG00000015201	NCBP1	99	89.345	Myotis_lucifugus
ENSGALG00000002087	NCBP1	100	89.533	ENSNGAG00000014101	Ncbp1	99	89.987	Nannospalax_galili
ENSGALG00000002087	NCBP1	75	88.210	ENSNBRG00000014674	NCBP1	94	89.767	Neolamprologus_brichardi
ENSGALG00000002087	NCBP1	100	90.290	ENSNLEG00000016909	NCBP1	99	91.323	Nomascus_leucogenys
ENSGALG00000002087	NCBP1	89	87.892	ENSMEUG00000010672	NCBP1	90	86.547	Notamacropus_eugenii
ENSGALG00000002087	NCBP1	84	84.602	ENSOPRG00000002144	-	83	91.176	Ochotona_princeps
ENSGALG00000002087	NCBP1	100	90.290	ENSODEG00000003232	NCBP1	99	90.629	Octodon_degus
ENSGALG00000002087	NCBP1	99	84.171	ENSONIG00000001502	NCBP1	98	84.399	Oreochromis_niloticus
ENSGALG00000002087	NCBP1	78	92.765	ENSOANG00000001918	NCBP1	99	92.765	Ornithorhynchus_anatinus
ENSGALG00000002087	NCBP1	98	89.948	ENSOCUG00000013853	NCBP1	95	90.289	Oryctolagus_cuniculus
ENSGALG00000002087	NCBP1	99	82.875	ENSORLG00000011008	NCBP1	98	82.443	Oryzias_latipes
ENSGALG00000002087	NCBP1	99	83.000	ENSORLG00020017455	NCBP1	98	82.570	Oryzias_latipes_hni
ENSGALG00000002087	NCBP1	99	83.000	ENSORLG00015012127	NCBP1	98	82.570	Oryzias_latipes_hsok
ENSGALG00000002087	NCBP1	99	83.000	ENSOMEG00000020698	NCBP1	98	82.952	Oryzias_melastigma
ENSGALG00000002087	NCBP1	100	90.416	ENSOGAG00000013888	NCBP1	98	90.757	Otolemur_garnettii
ENSGALG00000002087	NCBP1	100	89.786	ENSOARG00000011233	NCBP1	98	90.116	Ovis_aries
ENSGALG00000002087	NCBP1	100	90.290	ENSPPAG00000026462	NCBP1	99	90.720	Pan_paniscus
ENSGALG00000002087	NCBP1	100	90.290	ENSPPRG00000022574	NCBP1	98	90.629	Panthera_pardus
ENSGALG00000002087	NCBP1	100	90.290	ENSPTIG00000018507	NCBP1	98	90.629	Panthera_tigris_altaica
ENSGALG00000002087	NCBP1	100	90.290	ENSPTRG00000021167	NCBP1	99	90.629	Pan_troglodytes
ENSGALG00000002087	NCBP1	100	90.290	ENSPANG00000025591	NCBP1	99	91.323	Papio_anubis
ENSGALG00000002087	NCBP1	100	81.681	ENSPKIG00000015861	NCBP1	99	81.722	Paramormyrops_kingsleyae
ENSGALG00000002087	NCBP1	64	94.531	ENSPSIG00000009558	NCBP1	100	95.117	Pelodiscus_sinensis
ENSGALG00000002087	NCBP1	99	79.774	ENSPMGG00000020476	NCBP1	98	80.179	Periophthalmus_magnuspinnatus
ENSGALG00000002087	NCBP1	100	89.155	ENSPEMG00000020105	Ncbp1	98	89.602	Peromyscus_maniculatus_bairdii
ENSGALG00000002087	NCBP1	100	67.662	ENSPMAG00000005533	NCBP1	98	67.726	Petromyzon_marinus
ENSGALG00000002087	NCBP1	100	88.903	ENSPCIG00000015800	NCBP1	97	89.332	Phascolarctos_cinereus
ENSGALG00000002087	NCBP1	99	83.250	ENSPFOG00000004158	NCBP1	98	83.079	Poecilia_formosa
ENSGALG00000002087	NCBP1	99	83.563	ENSPLAG00000020002	NCBP1	98	83.653	Poecilia_latipinna
ENSGALG00000002087	NCBP1	99	83.563	ENSPMEG00000019821	NCBP1	98	83.653	Poecilia_mexicana
ENSGALG00000002087	NCBP1	99	83.584	ENSPREG00000006035	NCBP1	98	83.291	Poecilia_reticulata
ENSGALG00000002087	NCBP1	100	90.290	ENSPPYG00000019426	NCBP1	98	90.629	Pongo_abelii
ENSGALG00000002087	NCBP1	90	84.384	ENSPCAG00000009943	NCBP1	85	93.793	Procavia_capensis
ENSGALG00000002087	NCBP1	81	91.447	ENSPCOG00000020024	NCBP1	98	91.447	Propithecus_coquereli
ENSGALG00000002087	NCBP1	100	89.786	ENSPVAG00000005924	NCBP1	98	90.116	Pteropus_vampyrus
ENSGALG00000002087	NCBP1	90	83.403	ENSPNYG00000002140	NCBP1	99	83.426	Pundamilia_nyererei
ENSGALG00000002087	NCBP1	99	84.085	ENSPNAG00000027753	NCBP1	98	84.184	Pygocentrus_nattereri
ENSGALG00000002087	NCBP1	100	89.660	ENSRNOG00000023605	Ncbp1	98	90.116	Rattus_norvegicus
ENSGALG00000002087	NCBP1	100	90.290	ENSRBIG00000043175	NCBP1	99	91.323	Rhinopithecus_bieti
ENSGALG00000002087	NCBP1	100	90.290	ENSRROG00000029767	NCBP1	99	90.720	Rhinopithecus_roxellana
ENSGALG00000002087	NCBP1	100	90.290	ENSSBOG00000019378	NCBP1	98	91.687	Saimiri_boliviensis_boliviensis
ENSGALG00000002087	NCBP1	69	88.417	ENSSHAG00000015882	NCBP1	72	88.327	Sarcophilus_harrisii
ENSGALG00000002087	NCBP1	98	82.843	ENSSFOG00015001872	NCBP1	99	83.012	Scleropages_formosus
ENSGALG00000002087	NCBP1	99	83.166	ENSSMAG00000007463	NCBP1	98	82.992	Scophthalmus_maximus
ENSGALG00000002087	NCBP1	99	83.838	ENSSDUG00000007019	NCBP1	98	84.519	Seriola_dumerili
ENSGALG00000002087	NCBP1	99	83.920	ENSSLDG00000021924	NCBP1	98	84.271	Seriola_lalandi_dorsalis
ENSGALG00000002087	NCBP1	85	81.917	ENSSARG00000007274	NCBP1	87	81.699	Sorex_araneus
ENSGALG00000002087	NCBP1	100	86.507	ENSSPUG00000008609	NCBP1	99	86.778	Sphenodon_punctatus
ENSGALG00000002087	NCBP1	99	84.548	ENSSPAG00000012550	NCBP1	98	84.783	Stegastes_partitus
ENSGALG00000002087	NCBP1	100	90.038	ENSSSCG00000005366	NCBP1	98	90.372	Sus_scrofa
ENSGALG00000002087	NCBP1	100	92.095	ENSTGUG00000001472	NCBP1	98	92.720	Taeniopygia_guttata
ENSGALG00000002087	NCBP1	99	83.417	ENSTRUG00000005287	NCBP1	98	83.632	Takifugu_rubripes
ENSGALG00000002087	NCBP1	100	87.011	ENSTBEG00000004035	NCBP1	98	87.291	Tupaia_belangeri
ENSGALG00000002087	NCBP1	88	90.447	ENSTTRG00000000507	NCBP1	86	90.244	Tursiops_truncatus
ENSGALG00000002087	NCBP1	100	90.164	ENSUAMG00000005471	NCBP1	98	90.501	Ursus_americanus
ENSGALG00000002087	NCBP1	97	88.571	ENSUMAG00000011865	NCBP1	100	91.082	Ursus_maritimus
ENSGALG00000002087	NCBP1	100	86.255	ENSVPAG00000010537	NCBP1	98	86.521	Vicugna_pacos
ENSGALG00000002087	NCBP1	100	90.290	ENSVVUG00000019725	NCBP1	98	90.629	Vulpes_vulpes
ENSGALG00000002087	NCBP1	100	82.598	ENSXETG00000010179	ncbp1	98	82.927	Xenopus_tropicalis
ENSGALG00000002087	NCBP1	99	83.438	ENSXMAG00000018253	NCBP1	98	83.525	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	21873635.	IBA	Process
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	-	ISS	Process
GO:0000245	spliceosomal complex assembly	-	IEA	Process
GO:0000339	RNA cap binding	21873635.	IBA	Function
GO:0000340	RNA 7-methylguanosine cap binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISS	Component
GO:0005654	nucleoplasm	-	IEA	Component
GO:0005739	mitochondrion	-	IEA	Component
GO:0005829	cytosol	-	IEA	Component
GO:0005845	mRNA cap binding complex	21873635.	IBA	Component
GO:0005845	mRNA cap binding complex	-	ISS	Component
GO:0005846	nuclear cap binding complex	21873635.	IBA	Component
GO:0006370	7-methylguanosine mRNA capping	-	ISS	Process
GO:0006406	mRNA export from nucleus	21873635.	IBA	Process
GO:0006406	mRNA export from nucleus	-	ISS	Process
GO:0006446	regulation of translational initiation	-	ISS	Process
GO:0030307	positive regulation of cell growth	-	IEA	Process
GO:0031053	primary miRNA processing	21873635.	IBA	Process
GO:0031442	positive regulation of mRNA 3'-end processing	-	IEA	Process
GO:0045292	mRNA cis splicing, via spliceosome	-	IEA	Process
GO:0048026	positive regulation of mRNA splicing, via spliceosome	-	IEA	Process
GO:0098789	pre-mRNA cleavage required for polyadenylation	-	IEA	Process
GO:1905216	positive regulation of RNA binding	-	IEA	Process
GO:1990904	ribonucleoprotein complex	21873635.	IBA	Component