EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSGALG00000002706 (Gene tree)
Gene ID: 424778
Gene Symbol: XRN1
Alias: SEP1
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Gallus_gallus
Status: putative
Strand: Minus strand
Length: 32139 bases
Position: chr9:10579299-10611437
Accession: 424778
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGALP00000004257	XRN_N	PF03159.18	2.8e-96	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGALT00000004266	XRN1-201	5313	-	ENSGALP00000004257	1770 (aa)	XP_422596	E1C8R7

Gene Model

Click here to download ENSGALG00000002706's gene model file

Pathways

Pathway ID	Pathway Name	Source
gga03008	Ribosome biogenesis in eukaryotes	KEGG
gga03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSGALG00000002706's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGALG00000002706	XRN1	100	74.902	ENSG00000114127	XRN1	96	96.117	Homo_sapiens
ENSGALG00000002706	XRN1	91	73.043	ENSAPOG00000000622	xrn1	99	73.123	Acanthochromis_polyacanthus
ENSGALG00000002706	XRN1	100	75.154	ENSAMEG00000012538	XRN1	100	75.659	Ailuropoda_melanoleuca
ENSGALG00000002706	XRN1	94	71.451	ENSACIG00000001057	xrn1	98	73.279	Amphilophus_citrinellus
ENSGALG00000002706	XRN1	95	71.306	ENSAOCG00000014097	xrn1	98	71.384	Amphiprion_ocellaris
ENSGALG00000002706	XRN1	100	60.927	ENSAPEG00000006620	xrn1	91	72.147	Amphiprion_percula
ENSGALG00000002706	XRN1	98	67.556	ENSATEG00000009752	xrn1	100	67.578	Anabas_testudineus
ENSGALG00000002706	XRN1	99	91.881	ENSAPLG00000004905	XRN1	100	91.938	Anas_platyrhynchos
ENSGALG00000002706	XRN1	100	78.383	ENSACAG00000004985	XRN1	100	78.383	Anolis_carolinensis
ENSGALG00000002706	XRN1	100	74.845	ENSANAG00000029013	XRN1	99	86.496	Aotus_nancymaae
ENSGALG00000002706	XRN1	100	61.333	ENSACLG00000004806	xrn1	99	61.521	Astatotilapia_calliptera
ENSGALG00000002706	XRN1	100	60.702	ENSAMXG00000019370	xrn1	95	94.175	Astyanax_mexicanus
ENSGALG00000002706	XRN1	100	73.687	ENSBTAG00000011524	XRN1	100	74.134	Bos_taurus
ENSGALG00000002706	XRN1	100	74.398	ENSCJAG00000001872	XRN1	99	75.965	Callithrix_jacchus
ENSGALG00000002706	XRN1	100	75.604	ENSCAFG00000007783	XRN1	100	75.998	Canis_familiaris
ENSGALG00000002706	XRN1	100	75.660	ENSCAFG00020009120	XRN1	99	86.234	Canis_lupus_dingo
ENSGALG00000002706	XRN1	99	75.169	ENSCHIG00000019192	XRN1	99	75.563	Capra_hircus
ENSGALG00000002706	XRN1	100	74.845	ENSTSYG00000002705	XRN1	100	74.902	Carlito_syrichta
ENSGALG00000002706	XRN1	100	74.902	ENSCCAG00000034800	XRN1	99	89.189	Cebus_capucinus
ENSGALG00000002706	XRN1	100	75.183	ENSCATG00000041794	XRN1	100	75.183	Cercocebus_atys
ENSGALG00000002706	XRN1	100	74.157	ENSCLAG00000001451	XRN1	99	88.871	Chinchilla_lanigera
ENSGALG00000002706	XRN1	100	74.637	ENSCSAG00000011265	XRN1	100	74.637	Chlorocebus_sabaeus
ENSGALG00000002706	XRN1	52	97.403	ENSCHOG00000013961	-	55	97.403	Choloepus_hoffmanni
ENSGALG00000002706	XRN1	67	45.121	ENSCSAVG00000008584	-	98	44.887	Ciona_savignyi
ENSGALG00000002706	XRN1	100	75.295	ENSCANG00000037495	XRN1	99	89.189	Colobus_angolensis_palliatus
ENSGALG00000002706	XRN1	100	74.493	ENSCGRG00001019411	Xrn1	99	88.394	Cricetulus_griseus_chok1gshd
ENSGALG00000002706	XRN1	100	74.493	ENSCGRG00000012464	Xrn1	99	88.394	Cricetulus_griseus_crigri
ENSGALG00000002706	XRN1	94	65.895	ENSCSEG00000021285	xrn1	94	95.192	Cynoglossus_semilaevis
ENSGALG00000002706	XRN1	64	72.021	ENSCVAG00000013089	xrn1	99	72.198	Cyprinodon_variegatus
ENSGALG00000002706	XRN1	100	63.866	ENSDARG00000091652	xrn1	98	80.761	Danio_rerio
ENSGALG00000002706	XRN1	100	73.596	ENSDORG00000013833	Xrn1	100	74.045	Dipodomys_ordii
ENSGALG00000002706	XRN1	67	41.186	FBgn0020261	pcm	72	40.939	Drosophila_melanogaster
ENSGALG00000002706	XRN1	86	91.892	ENSETEG00000003978	XRN1	88	92.742	Echinops_telfairi
ENSGALG00000002706	XRN1	100	75.660	ENSEASG00005002687	XRN1	99	88.235	Equus_asinus_asinus
ENSGALG00000002706	XRN1	100	74.358	ENSECAG00000008301	XRN1	100	74.804	Equus_caballus
ENSGALG00000002706	XRN1	89	75.538	ENSEEUG00000011323	XRN1	90	75.855	Erinaceus_europaeus
ENSGALG00000002706	XRN1	100	63.205	ENSELUG00000000169	xrn1	100	63.149	Esox_lucius
ENSGALG00000002706	XRN1	100	70.529	ENSFCAG00000027589	XRN1	99	89.451	Felis_catus
ENSGALG00000002706	XRN1	100	92.616	ENSFALG00000007021	XRN1	100	92.616	Ficedula_albicollis
ENSGALG00000002706	XRN1	100	74.719	ENSFDAG00000020494	XRN1	99	88.871	Fukomys_damarensis
ENSGALG00000002706	XRN1	81	68.295	ENSGMOG00000006396	xrn1	84	68.600	Gadus_morhua
ENSGALG00000002706	XRN1	100	59.290	ENSGACG00000014328	xrn1	100	59.590	Gasterosteus_aculeatus
ENSGALG00000002706	XRN1	95	87.158	ENSGAGG00000017535	XRN1	99	87.158	Gopherus_agassizii
ENSGALG00000002706	XRN1	100	75.183	ENSGGOG00000008047	XRN1	100	75.183	Gorilla_gorilla
ENSGALG00000002706	XRN1	94	70.287	ENSHBUG00000005908	xrn1	98	73.967	Haplochromis_burtoni
ENSGALG00000002706	XRN1	100	75.407	ENSHGLG00000014476	XRN1	99	88.871	Heterocephalus_glaber_female
ENSGALG00000002706	XRN1	100	75.463	ENSHGLG00100015130	XRN1	99	88.871	Heterocephalus_glaber_male
ENSGALG00000002706	XRN1	91	71.197	ENSHCOG00000014062	xrn1	99	71.302	Hippocampus_comes
ENSGALG00000002706	XRN1	100	61.202	ENSIPUG00000015229	xrn1	99	61.608	Ictalurus_punctatus
ENSGALG00000002706	XRN1	100	75.548	ENSSTOG00000013552	XRN1	99	88.712	Ictidomys_tridecemlineatus
ENSGALG00000002706	XRN1	99	73.132	ENSJJAG00000010863	Xrn1	99	87.086	Jaculus_jaculus
ENSGALG00000002706	XRN1	98	68.157	ENSKMAG00000021356	xrn1	94	75.527	Kryptolebias_marmoratus
ENSGALG00000002706	XRN1	95	69.823	ENSLBEG00000018656	xrn1	97	96.117	Labrus_bergylta
ENSGALG00000002706	XRN1	99	70.852	ENSLACG00000009020	XRN1	99	70.852	Latimeria_chalumnae
ENSGALG00000002706	XRN1	100	65.982	ENSLOCG00000007944	xrn1	100	65.982	Lepisosteus_oculatus
ENSGALG00000002706	XRN1	60	86.142	ENSLAFG00000015426	XRN1	100	86.142	Loxodonta_africana
ENSGALG00000002706	XRN1	100	75.239	ENSMFAG00000032599	XRN1	100	75.239	Macaca_fascicularis
ENSGALG00000002706	XRN1	100	75.183	ENSMMUG00000014038	XRN1	100	75.183	Macaca_mulatta
ENSGALG00000002706	XRN1	100	75.014	ENSMNEG00000034217	XRN1	100	75.014	Macaca_nemestrina
ENSGALG00000002706	XRN1	92	70.652	ENSMAMG00000013219	xrn1	95	76.434	Mastacembelus_armatus
ENSGALG00000002706	XRN1	100	61.043	ENSMZEG00005015099	xrn1	99	61.466	Maylandia_zebra
ENSGALG00000002706	XRN1	99	94.390	ENSMGAG00000006333	XRN1	100	94.390	Meleagris_gallopavo
ENSGALG00000002706	XRN1	100	75.225	ENSMICG00000048948	XRN1	96	96.117	Microcebus_murinus
ENSGALG00000002706	XRN1	55	88.076	ENSMOCG00000008665	Xrn1	99	88.076	Microtus_ochrogaster
ENSGALG00000002706	XRN1	100	75.042	ENSMODG00000021236	XRN1	100	75.433	Monodelphis_domestica
ENSGALG00000002706	XRN1	94	67.988	ENSMALG00000004098	xrn1	98	67.988	Monopterus_albus
ENSGALG00000002706	XRN1	100	67.697	MGP_CAROLIEiJ_G0032535	Xrn1	100	95.000	Mus_caroli
ENSGALG00000002706	XRN1	100	72.932	ENSMUSG00000032410	Xrn1	100	95.000	Mus_musculus
ENSGALG00000002706	XRN1	100	73.536	MGP_PahariEiJ_G0015404	Xrn1	100	95.000	Mus_pahari
ENSGALG00000002706	XRN1	100	72.819	MGP_SPRETEiJ_G0033678	Xrn1	100	95.000	Mus_spretus
ENSGALG00000002706	XRN1	100	74.078	ENSMPUG00000012040	XRN1	100	74.525	Mustela_putorius_furo
ENSGALG00000002706	XRN1	100	75.056	ENSMLUG00000016885	XRN1	100	75.056	Myotis_lucifugus
ENSGALG00000002706	XRN1	55	82.671	ENSNGAG00000023964	Xrn1	99	83.943	Nannospalax_galili
ENSGALG00000002706	XRN1	100	74.958	ENSNLEG00000004726	XRN1	100	75.014	Nomascus_leucogenys
ENSGALG00000002706	XRN1	68	96.907	ENSMEUG00000014473	-	72	97.087	Notamacropus_eugenii
ENSGALG00000002706	XRN1	76	81.818	ENSOPRG00000007337	-	76	81.818	Ochotona_princeps
ENSGALG00000002706	XRN1	100	60.831	ENSONIG00000016673	xrn1	99	64.909	Oreochromis_niloticus
ENSGALG00000002706	XRN1	92	72.733	ENSOANG00000006735	XRN1	100	73.103	Ornithorhynchus_anatinus
ENSGALG00000002706	XRN1	100	74.833	ENSOCUG00000001861	XRN1	100	74.888	Oryctolagus_cuniculus
ENSGALG00000002706	XRN1	95	71.851	ENSORLG00000013005	xrn1	97	72.028	Oryzias_latipes
ENSGALG00000002706	XRN1	95	71.540	ENSORLG00020005559	xrn1	99	71.873	Oryzias_latipes_hni
ENSGALG00000002706	XRN1	95	71.384	ENSORLG00015022523	xrn1	99	71.540	Oryzias_latipes_hsok
ENSGALG00000002706	XRN1	95	71.673	ENSOMEG00000015397	xrn1	100	72.925	Oryzias_melastigma
ENSGALG00000002706	XRN1	100	72.641	ENSOGAG00000000170	XRN1	100	72.697	Otolemur_garnettii
ENSGALG00000002706	XRN1	99	74.902	ENSOARG00000006343	XRN1	99	75.293	Ovis_aries
ENSGALG00000002706	XRN1	100	74.831	ENSPPAG00000010180	XRN1	100	75.239	Pan_paniscus
ENSGALG00000002706	XRN1	100	74.634	ENSPPRG00000007125	XRN1	100	75.084	Panthera_pardus
ENSGALG00000002706	XRN1	100	74.634	ENSPTIG00000021081	XRN1	100	75.084	Panthera_tigris_altaica
ENSGALG00000002706	XRN1	100	74.831	ENSPTRG00000015482	XRN1	100	75.239	Pan_troglodytes
ENSGALG00000002706	XRN1	100	75.127	ENSPANG00000010638	XRN1	100	75.127	Papio_anubis
ENSGALG00000002706	XRN1	100	83.623	ENSPSIG00000018050	XRN1	100	83.679	Pelodiscus_sinensis
ENSGALG00000002706	XRN1	55	75.906	ENSPMGG00000002648	xrn1	98	78.571	Periophthalmus_magnuspinnatus
ENSGALG00000002706	XRN1	55	88.235	ENSPEMG00000020610	Xrn1	99	88.235	Peromyscus_maniculatus_bairdii
ENSGALG00000002706	XRN1	62	51.814	ENSPMAG00000002975	xrn1	99	49.451	Petromyzon_marinus
ENSGALG00000002706	XRN1	100	76.586	ENSPCIG00000028735	XRN1	99	89.809	Phascolarctos_cinereus
ENSGALG00000002706	XRN1	91	63.787	ENSPFOG00000013932	xrn1	99	63.870	Poecilia_formosa
ENSGALG00000002706	XRN1	91	63.597	ENSPLAG00000021653	xrn1	99	63.961	Poecilia_latipinna
ENSGALG00000002706	XRN1	89	64.201	ENSPMEG00000003076	xrn1	95	64.205	Poecilia_mexicana
ENSGALG00000002706	XRN1	96	69.410	ENSPREG00000021147	xrn1	99	68.779	Poecilia_reticulata
ENSGALG00000002706	XRN1	100	74.581	ENSPPYG00000014172	XRN1	100	74.581	Pongo_abelii
ENSGALG00000002706	XRN1	83	76.318	ENSPCAG00000005638	XRN1	93	76.318	Procavia_capensis
ENSGALG00000002706	XRN1	100	75.183	ENSPCOG00000013089	XRN1	99	89.030	Propithecus_coquereli
ENSGALG00000002706	XRN1	85	82.756	ENSPVAG00000016265	XRN1	88	82.756	Pteropus_vampyrus
ENSGALG00000002706	XRN1	94	70.820	ENSPNYG00000010570	xrn1	99	70.820	Pundamilia_nyererei
ENSGALG00000002706	XRN1	95	71.108	ENSPNAG00000023531	xrn1	99	71.108	Pygocentrus_nattereri
ENSGALG00000002706	XRN1	100	73.960	ENSRNOG00000042951	Xrn1	100	74.226	Rattus_norvegicus
ENSGALG00000002706	XRN1	100	74.676	ENSRBIG00000041227	XRN1	100	74.676	Rhinopithecus_bieti
ENSGALG00000002706	XRN1	65	55.041	YGL173C	XRN1	81	34.254	Saccharomyces_cerevisiae
ENSGALG00000002706	XRN1	100	74.620	ENSSBOG00000029561	XRN1	100	74.620	Saimiri_boliviensis_boliviensis
ENSGALG00000002706	XRN1	99	76.581	ENSSHAG00000016207	XRN1	100	76.980	Sarcophilus_harrisii
ENSGALG00000002706	XRN1	100	60.879	ENSSFOG00015024211	xrn1	100	61.218	Scleropages_formosus
ENSGALG00000002706	XRN1	96	70.100	ENSSMAG00000016534	xrn1	100	69.248	Scophthalmus_maximus
ENSGALG00000002706	XRN1	86	72.119	ENSSDUG00000010306	xrn1	97	72.419	Seriola_dumerili
ENSGALG00000002706	XRN1	97	69.739	ENSSLDG00000021543	xrn1	100	68.142	Seriola_lalandi_dorsalis
ENSGALG00000002706	XRN1	67	78.283	ENSSARG00000007741	-	83	78.283	Sorex_araneus
ENSGALG00000002706	XRN1	100	90.361	ENSTGUG00000008498	XRN1	100	90.361	Taeniopygia_guttata
ENSGALG00000002706	XRN1	94	68.952	ENSTRUG00000004895	xrn1	99	73.428	Takifugu_rubripes
ENSGALG00000002706	XRN1	100	56.812	ENSTNIG00000017615	xrn1	100	57.364	Tetraodon_nigroviridis
ENSGALG00000002706	XRN1	85	91.375	ENSTBEG00000003256	XRN1	89	80.223	Tupaia_belangeri
ENSGALG00000002706	XRN1	100	70.223	ENSTTRG00000012914	XRN1	100	70.615	Tursiops_truncatus
ENSGALG00000002706	XRN1	100	74.045	ENSUAMG00000001608	XRN1	99	84.420	Ursus_americanus
ENSGALG00000002706	XRN1	100	75.730	ENSUMAG00000013625	XRN1	100	76.180	Ursus_maritimus
ENSGALG00000002706	XRN1	100	70.989	ENSVPAG00000004690	XRN1	100	71.381	Vicugna_pacos
ENSGALG00000002706	XRN1	100	75.660	ENSVVUG00000024461	XRN1	99	89.030	Vulpes_vulpes
ENSGALG00000002706	XRN1	100	66.778	ENSXETG00000000619	xrn1	97	87.366	Xenopus_tropicalis
ENSGALG00000002706	XRN1	92	71.736	ENSXCOG00000007917	xrn1	98	71.975	Xiphophorus_couchianus
ENSGALG00000002706	XRN1	90	71.417	ENSXMAG00000018320	xrn1	99	71.815	Xiphophorus_maculatus