EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSGALG00000002773 (Gene tree)
Gene ID: 419901
Gene Symbol: SNRPC
Alias: U1-C|U1C
Full Name: small nuclear ribonucleoprotein polypeptide C
Gene Type: protein_coding
Species: Gallus_gallus
Status: putative
Strand: Minus strand
Length: 4629 bases
Position: chr26:4305415-4310043
Accession: 419901
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGALP00000004369	zf-U1	PF06220.12	1.1e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGALT00000004378	SNRPC-201	1367	-	ENSGALP00000004369	160 (aa)	XP_004935101	A0A1I7Q3Y9

Gene Model

Click here to download ENSGALG00000002773's gene model file

Pathways

Pathway ID	Pathway Name	Source
gga03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSGALG00000002773's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGALG00000002773	SNRPC	100	96.875	ENSG00000124562	SNRPC	100	96.875	Homo_sapiens
ENSGALG00000002773	SNRPC	100	95.000	ENSAMEG00000000963	SNRPC	87	96.203	Ailuropoda_melanoleuca
ENSGALG00000002773	SNRPC	99	96.203	ENSACAG00000015721	SNRPC	87	96.203	Anolis_carolinensis
ENSGALG00000002773	SNRPC	100	96.875	ENSANAG00000019696	-	100	96.875	Aotus_nancymaae
ENSGALG00000002773	SNRPC	100	86.250	ENSANAG00000019726	-	92	86.875	Aotus_nancymaae
ENSGALG00000002773	SNRPC	100	92.500	ENSANAG00000019157	-	100	92.500	Aotus_nancymaae
ENSGALG00000002773	SNRPC	100	73.125	ENSANAG00000021444	-	61	79.381	Aotus_nancymaae
ENSGALG00000002773	SNRPC	100	96.250	ENSANAG00000007843	-	100	96.250	Aotus_nancymaae
ENSGALG00000002773	SNRPC	99	89.308	ENSANAG00000020588	-	92	89.308	Aotus_nancymaae
ENSGALG00000002773	SNRPC	100	85.000	ENSANAG00000021026	-	100	78.125	Aotus_nancymaae
ENSGALG00000002773	SNRPC	100	83.750	ENSAMXG00000032641	snrpc	100	73.125	Astyanax_mexicanus
ENSGALG00000002773	SNRPC	100	96.875	ENSBTAG00000024549	SNRPC	100	96.875	Bos_taurus
ENSGALG00000002773	SNRPC	100	96.875	ENSCJAG00000015321	-	100	96.875	Callithrix_jacchus
ENSGALG00000002773	SNRPC	100	95.000	ENSCJAG00000041822	-	100	95.000	Callithrix_jacchus
ENSGALG00000002773	SNRPC	100	95.625	ENSCJAG00000043055	-	100	95.625	Callithrix_jacchus
ENSGALG00000002773	SNRPC	74	96.639	ENSCAFG00000001231	-	93	96.639	Canis_familiaris
ENSGALG00000002773	SNRPC	100	76.250	ENSCAFG00000025525	-	100	76.250	Canis_familiaris
ENSGALG00000002773	SNRPC	100	92.500	ENSCAFG00000031775	-	100	92.500	Canis_familiaris
ENSGALG00000002773	SNRPC	100	86.335	ENSCAFG00000028988	-	100	86.957	Canis_familiaris
ENSGALG00000002773	SNRPC	100	76.536	ENSCAFG00020026577	-	100	82.682	Canis_lupus_dingo
ENSGALG00000002773	SNRPC	99	85.443	ENSCAFG00020009944	-	90	85.443	Canis_lupus_dingo
ENSGALG00000002773	SNRPC	100	93.125	ENSCAFG00020005758	-	99	93.671	Canis_lupus_dingo
ENSGALG00000002773	SNRPC	100	96.875	ENSCAFG00020005945	-	100	96.875	Canis_lupus_dingo
ENSGALG00000002773	SNRPC	100	92.500	ENSCAFG00020017383	-	100	92.500	Canis_lupus_dingo
ENSGALG00000002773	SNRPC	100	96.250	ENSCHIG00000012087	-	100	96.250	Capra_hircus
ENSGALG00000002773	SNRPC	100	81.875	ENSTSYG00000025721	-	100	75.000	Carlito_syrichta
ENSGALG00000002773	SNRPC	99	86.164	ENSTSYG00000029745	-	62	91.129	Carlito_syrichta
ENSGALG00000002773	SNRPC	100	96.875	ENSTSYG00000011216	-	100	96.875	Carlito_syrichta
ENSGALG00000002773	SNRPC	89	96.503	ENSCAPG00000005161	SNRPC	100	96.503	Cavia_aperea
ENSGALG00000002773	SNRPC	100	96.875	ENSCPOG00000008563	SNRPC	100	96.875	Cavia_porcellus
ENSGALG00000002773	SNRPC	100	68.125	ENSCCAG00000028293	-	58	88.312	Cebus_capucinus
ENSGALG00000002773	SNRPC	100	91.250	ENSCCAG00000036059	-	89	91.250	Cebus_capucinus
ENSGALG00000002773	SNRPC	99	74.051	ENSCCAG00000026624	-	66	74.051	Cebus_capucinus
ENSGALG00000002773	SNRPC	98	88.535	ENSCCAG00000022751	-	95	88.535	Cebus_capucinus
ENSGALG00000002773	SNRPC	98	78.344	ENSCCAG00000022209	-	95	78.344	Cebus_capucinus
ENSGALG00000002773	SNRPC	100	96.875	ENSCATG00000035787	SNRPC	100	96.875	Cercocebus_atys
ENSGALG00000002773	SNRPC	99	79.114	ENSCLAG00000010242	-	96	79.114	Chinchilla_lanigera
ENSGALG00000002773	SNRPC	100	96.875	ENSCLAG00000016920	SNRPC	100	96.875	Chinchilla_lanigera
ENSGALG00000002773	SNRPC	100	76.536	ENSCSAG00000009821	SNRPC	100	82.682	Chlorocebus_sabaeus
ENSGALG00000002773	SNRPC	100	79.375	ENSCHOG00000011439	SNRPC	88	80.380	Choloepus_hoffmanni
ENSGALG00000002773	SNRPC	100	96.250	ENSCPBG00000027142	SNRPC	100	96.250	Chrysemys_picta_bellii
ENSGALG00000002773	SNRPC	97	48.387	ENSCING00000021229	ci-zf(matrin)-4	51	82.540	Ciona_intestinalis
ENSGALG00000002773	SNRPC	100	96.875	ENSCANG00000028035	SNRPC	100	96.875	Colobus_angolensis_palliatus
ENSGALG00000002773	SNRPC	100	85.000	ENSCGRG00001021483	-	100	83.125	Cricetulus_griseus_chok1gshd
ENSGALG00000002773	SNRPC	100	96.250	ENSCGRG00001009011	-	100	96.250	Cricetulus_griseus_chok1gshd
ENSGALG00000002773	SNRPC	100	94.375	ENSCGRG00000005005	Snrpc	99	95.570	Cricetulus_griseus_crigri
ENSGALG00000002773	SNRPC	100	83.750	ENSDARG00000009871	snrpc	100	83.750	Danio_rerio
ENSGALG00000002773	SNRPC	75	95.833	ENSDNOG00000042403	-	94	95.833	Dasypus_novemcinctus
ENSGALG00000002773	SNRPC	100	96.250	ENSDNOG00000034699	-	99	96.250	Dasypus_novemcinctus
ENSGALG00000002773	SNRPC	100	78.125	ENSDORG00000005955	Snrpc	66	77.215	Dipodomys_ordii
ENSGALG00000002773	SNRPC	95	76.974	ENSDORG00000029823	-	55	93.506	Dipodomys_ordii
ENSGALG00000002773	SNRPC	53	90.476	ENSETEG00000008756	-	75	90.909	Echinops_telfairi
ENSGALG00000002773	SNRPC	98	89.172	ENSETEG00000011265	-	100	89.172	Echinops_telfairi
ENSGALG00000002773	SNRPC	98	93.631	ENSETEG00000008268	-	100	93.631	Echinops_telfairi
ENSGALG00000002773	SNRPC	100	96.875	ENSEASG00005021007	SNRPC	100	96.875	Equus_asinus_asinus
ENSGALG00000002773	SNRPC	100	96.875	ENSECAG00000026848	SNRPC	100	96.875	Equus_caballus
ENSGALG00000002773	SNRPC	99	78.616	ENSEEUG00000014633	SNRPC	90	78.616	Erinaceus_europaeus
ENSGALG00000002773	SNRPC	100	90.000	ENSFCAG00000031775	-	88	90.000	Felis_catus
ENSGALG00000002773	SNRPC	100	96.875	ENSFCAG00000044077	-	100	96.875	Felis_catus
ENSGALG00000002773	SNRPC	100	98.125	ENSFALG00000003756	SNRPC	100	98.125	Ficedula_albicollis
ENSGALG00000002773	SNRPC	100	96.875	ENSFDAG00000018111	SNRPC	100	96.875	Fukomys_damarensis
ENSGALG00000002773	SNRPC	100	96.250	ENSGAGG00000003063	SNRPC	100	96.250	Gopherus_agassizii
ENSGALG00000002773	SNRPC	100	96.875	ENSGGOG00000012499	SNRPC	100	96.875	Gorilla_gorilla
ENSGALG00000002773	SNRPC	100	96.875	ENSHGLG00000013981	SNRPC	100	96.875	Heterocephalus_glaber_female
ENSGALG00000002773	SNRPC	100	80.000	ENSHGLG00000017741	-	100	77.500	Heterocephalus_glaber_female
ENSGALG00000002773	SNRPC	81	72.308	ENSHGLG00000005871	-	100	72.500	Heterocephalus_glaber_female
ENSGALG00000002773	SNRPC	100	96.875	ENSHGLG00100009478	SNRPC	100	96.875	Heterocephalus_glaber_male
ENSGALG00000002773	SNRPC	100	80.000	ENSHGLG00100010786	-	100	77.500	Heterocephalus_glaber_male
ENSGALG00000002773	SNRPC	100	91.875	ENSHGLG00100017764	-	100	91.875	Heterocephalus_glaber_male
ENSGALG00000002773	SNRPC	100	84.375	ENSIPUG00000024851	snrpc	100	84.375	Ictalurus_punctatus
ENSGALG00000002773	SNRPC	100	96.875	ENSSTOG00000013786	SNRPC	100	96.875	Ictidomys_tridecemlineatus
ENSGALG00000002773	SNRPC	100	96.250	ENSJJAG00000021741	Snrpc	100	96.250	Jaculus_jaculus
ENSGALG00000002773	SNRPC	100	96.875	ENSLAFG00000013534	SNRPC	100	96.875	Loxodonta_africana
ENSGALG00000002773	SNRPC	100	96.250	ENSMFAG00000030525	-	100	96.250	Macaca_fascicularis
ENSGALG00000002773	SNRPC	100	96.875	ENSMFAG00000031764	-	100	96.875	Macaca_fascicularis
ENSGALG00000002773	SNRPC	100	95.625	ENSMMUG00000000869	-	97	95.625	Macaca_mulatta
ENSGALG00000002773	SNRPC	100	95.625	ENSMMUG00000039415	-	100	95.625	Macaca_mulatta
ENSGALG00000002773	SNRPC	100	86.875	ENSMMUG00000045425	-	100	86.875	Macaca_mulatta
ENSGALG00000002773	SNRPC	100	96.875	ENSMNEG00000032731	SNRPC	100	96.875	Macaca_nemestrina
ENSGALG00000002773	SNRPC	97	70.323	ENSMLEG00000039724	-	81	67.742	Mandrillus_leucophaeus
ENSGALG00000002773	SNRPC	98	88.462	ENSMLEG00000040224	-	89	88.462	Mandrillus_leucophaeus
ENSGALG00000002773	SNRPC	100	96.875	ENSMLEG00000033916	-	100	96.875	Mandrillus_leucophaeus
ENSGALG00000002773	SNRPC	100	97.500	ENSMGAG00000006054	SNRPC	100	97.500	Meleagris_gallopavo
ENSGALG00000002773	SNRPC	100	96.250	ENSMICG00000032183	-	100	96.250	Microcebus_murinus
ENSGALG00000002773	SNRPC	100	81.875	ENSMICG00000036552	-	87	80.255	Microcebus_murinus
ENSGALG00000002773	SNRPC	100	85.000	ENSMICG00000009130	-	100	85.625	Microcebus_murinus
ENSGALG00000002773	SNRPC	100	96.250	ENSMICG00000007339	-	100	96.250	Microcebus_murinus
ENSGALG00000002773	SNRPC	100	96.250	ENSMOCG00000017609	Snrpc	100	96.250	Microtus_ochrogaster
ENSGALG00000002773	SNRPC	100	96.875	ENSMODG00000013904	-	100	96.875	Monodelphis_domestica
ENSGALG00000002773	SNRPC	100	96.250	MGP_CAROLIEiJ_G0021308	Snrpc	100	96.250	Mus_caroli
ENSGALG00000002773	SNRPC	100	96.250	ENSMUSG00000024217	Snrpc	100	96.250	Mus_musculus
ENSGALG00000002773	SNRPC	74	95.798	MGP_SPRETEiJ_G0022221	-	98	95.798	Mus_spretus
ENSGALG00000002773	SNRPC	100	95.000	ENSMPUG00000003210	SNRPC	99	96.203	Mustela_putorius_furo
ENSGALG00000002773	SNRPC	100	95.000	ENSMLUG00000002488	SNRPC	99	96.203	Myotis_lucifugus
ENSGALG00000002773	SNRPC	100	96.250	ENSNGAG00000019686	Snrpc	100	96.250	Nannospalax_galili
ENSGALG00000002773	SNRPC	100	96.875	ENSNLEG00000034810	SNRPC	100	96.875	Nomascus_leucogenys
ENSGALG00000002773	SNRPC	89	97.203	ENSMEUG00000009300	SNRPC	100	97.203	Notamacropus_eugenii
ENSGALG00000002773	SNRPC	100	96.875	ENSODEG00000017080	-	100	96.875	Octodon_degus
ENSGALG00000002773	SNRPC	83	91.729	ENSODEG00000006008	-	95	91.729	Octodon_degus
ENSGALG00000002773	SNRPC	100	96.250	ENSODEG00000020201	-	100	96.250	Octodon_degus
ENSGALG00000002773	SNRPC	100	96.875	ENSODEG00000018985	-	100	96.875	Octodon_degus
ENSGALG00000002773	SNRPC	100	95.625	ENSODEG00000019633	-	100	95.625	Octodon_degus
ENSGALG00000002773	SNRPC	100	96.875	ENSODEG00000020370	-	100	96.875	Octodon_degus
ENSGALG00000002773	SNRPC	91	94.595	ENSOANG00000003405	SNRPC	100	94.595	Ornithorhynchus_anatinus
ENSGALG00000002773	SNRPC	100	96.875	ENSOCUG00000026668	-	100	96.875	Oryctolagus_cuniculus
ENSGALG00000002773	SNRPC	100	95.625	ENSOCUG00000023292	-	100	95.625	Oryctolagus_cuniculus
ENSGALG00000002773	SNRPC	100	95.625	ENSOCUG00000026430	-	99	95.625	Oryctolagus_cuniculus
ENSGALG00000002773	SNRPC	66	80.189	ENSOMEG00000012014	snrpc	86	78.750	Oryzias_melastigma
ENSGALG00000002773	SNRPC	97	81.935	ENSOGAG00000028405	-	99	79.355	Otolemur_garnettii
ENSGALG00000002773	SNRPC	100	95.000	ENSOGAG00000026269	-	100	95.000	Otolemur_garnettii
ENSGALG00000002773	SNRPC	99	96.203	ENSOGAG00000008755	-	88	96.203	Otolemur_garnettii
ENSGALG00000002773	SNRPC	100	96.875	ENSOARG00000010823	SNRPC	100	96.875	Ovis_aries
ENSGALG00000002773	SNRPC	100	96.875	ENSPPAG00000043871	SNRPC	100	96.875	Pan_paniscus
ENSGALG00000002773	SNRPC	96	58.442	ENSPPRG00000016017	-	86	54.545	Panthera_pardus
ENSGALG00000002773	SNRPC	100	96.875	ENSPPRG00000008647	-	100	96.875	Panthera_pardus
ENSGALG00000002773	SNRPC	100	62.500	ENSPPRG00000010967	-	89	55.625	Panthera_pardus
ENSGALG00000002773	SNRPC	100	96.875	ENSPTIG00000021867	-	100	96.875	Panthera_tigris_altaica
ENSGALG00000002773	SNRPC	100	96.875	ENSPTRG00000018070	SNRPC	100	96.875	Pan_troglodytes
ENSGALG00000002773	SNRPC	100	96.875	ENSPANG00000022802	-	100	96.875	Papio_anubis
ENSGALG00000002773	SNRPC	100	85.625	ENSPANG00000018228	-	94	85.625	Papio_anubis
ENSGALG00000002773	SNRPC	100	81.366	ENSPKIG00000001671	SNRPC	100	78.750	Paramormyrops_kingsleyae
ENSGALG00000002773	SNRPC	59	84.211	ENSPKIG00000003136	snrpc	50	92.308	Paramormyrops_kingsleyae
ENSGALG00000002773	SNRPC	99	96.203	ENSPSIG00000004876	SNRPC	77	96.203	Pelodiscus_sinensis
ENSGALG00000002773	SNRPC	100	96.250	ENSPEMG00000010773	Snrpc	100	96.250	Peromyscus_maniculatus_bairdii
ENSGALG00000002773	SNRPC	100	84.375	ENSPEMG00000002763	-	100	82.500	Peromyscus_maniculatus_bairdii
ENSGALG00000002773	SNRPC	53	95.238	ENSPPYG00000029902	-	84	95.238	Pongo_abelii
ENSGALG00000002773	SNRPC	99	96.203	ENSPCAG00000016885	SNRPC	90	96.203	Procavia_capensis
ENSGALG00000002773	SNRPC	100	96.875	ENSPCOG00000004904	SNRPC	100	96.875	Propithecus_coquereli
ENSGALG00000002773	SNRPC	99	95.570	ENSPVAG00000015597	SNRPC	87	95.570	Pteropus_vampyrus
ENSGALG00000002773	SNRPC	100	96.250	ENSRNOG00000000493	Snrpc	100	96.250	Rattus_norvegicus
ENSGALG00000002773	SNRPC	100	96.250	ENSRBIG00000022998	-	100	96.250	Rhinopithecus_bieti
ENSGALG00000002773	SNRPC	100	96.875	ENSRBIG00000037567	-	100	96.875	Rhinopithecus_bieti
ENSGALG00000002773	SNRPC	100	86.875	ENSRBIG00000036353	-	83	86.875	Rhinopithecus_bieti
ENSGALG00000002773	SNRPC	100	96.250	ENSRBIG00000014819	-	100	96.250	Rhinopithecus_bieti
ENSGALG00000002773	SNRPC	100	96.875	ENSRROG00000041300	SNRPC	100	96.875	Rhinopithecus_roxellana
ENSGALG00000002773	SNRPC	95	79.605	ENSSBOG00000032361	-	75	80.488	Saimiri_boliviensis_boliviensis
ENSGALG00000002773	SNRPC	98	80.255	ENSSBOG00000023189	-	91	80.255	Saimiri_boliviensis_boliviensis
ENSGALG00000002773	SNRPC	98	78.344	ENSSBOG00000032882	-	93	78.344	Saimiri_boliviensis_boliviensis
ENSGALG00000002773	SNRPC	100	96.875	ENSSBOG00000031528	-	100	96.875	Saimiri_boliviensis_boliviensis
ENSGALG00000002773	SNRPC	99	96.835	ENSSHAG00000000945	-	87	96.835	Sarcophilus_harrisii
ENSGALG00000002773	SNRPC	100	78.750	ENSSFOG00015019150	snrpc	100	78.750	Scleropages_formosus
ENSGALG00000002773	SNRPC	66	85.849	ENSSFOG00015022422	snrpc	79	87.097	Scleropages_formosus
ENSGALG00000002773	SNRPC	100	73.125	ENSSARG00000008970	SNRPC	89	73.125	Sorex_araneus
ENSGALG00000002773	SNRPC	100	96.875	ENSSPUG00000002502	SNRPC	100	96.875	Sphenodon_punctatus
ENSGALG00000002773	SNRPC	100	96.875	ENSSSCG00000001531	SNRPC	100	96.875	Sus_scrofa
ENSGALG00000002773	SNRPC	100	96.875	ENSTGUG00000001773	SNRPC	100	96.875	Taeniopygia_guttata
ENSGALG00000002773	SNRPC	98	70.701	ENSTBEG00000015356	-	68	87.629	Tupaia_belangeri
ENSGALG00000002773	SNRPC	98	89.172	ENSTBEG00000013022	-	100	89.172	Tupaia_belangeri
ENSGALG00000002773	SNRPC	100	95.000	ENSTTRG00000007827	SNRPC	86	96.203	Tursiops_truncatus
ENSGALG00000002773	SNRPC	75	95.833	ENSUAMG00000014125	SNRPC	80	95.833	Ursus_americanus
ENSGALG00000002773	SNRPC	100	86.592	ENSUMAG00000010869	SNRPC	100	86.592	Ursus_maritimus
ENSGALG00000002773	SNRPC	89	71.329	ENSVPAG00000003106	SNRPC	79	71.329	Vicugna_pacos
ENSGALG00000002773	SNRPC	97	91.613	ENSVVUG00000010467	-	87	91.720	Vulpes_vulpes
ENSGALG00000002773	SNRPC	100	95.625	ENSVVUG00000021947	-	100	95.625	Vulpes_vulpes
ENSGALG00000002773	SNRPC	100	89.375	ENSXETG00000024721	snrpc	100	89.375	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000243	commitment complex	-	IEA	Component
GO:0000387	spliceosomal snRNP assembly	-	IEA	Process
GO:0000395	mRNA 5'-splice site recognition	21873635.	IBA	Process
GO:0003729	mRNA binding	-	IEA	Function
GO:0005685	U1 snRNP	21873635.	IBA	Component
GO:0005685	U1 snRNP	-	ISS	Component
GO:0008270	zinc ion binding	-	IEA	Function
GO:0030619	U1 snRNA binding	-	IEA	Function
GO:0030627	pre-mRNA 5'-splice site binding	21873635.	IBA	Function
GO:0071004	U2-type prespliceosome	-	IEA	Component