EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSGALG00000003072 (Gene tree)
Gene ID
417563
Gene Symbol
RPA1
Alias
-
Full Name
Gallus gallus replication protein A1 (RPA1)%2C mRNA.
Gene Type
protein_coding
Species
Gallus_gallus
Status
putative
Strand
Plus strand
Length
21528 bases
Position
chr19:5568657-5590184
Accession
NM_001006221
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSGALP00000004840tRNA_anti-codonPF01336.254.1e-1211
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSGALT00000004849-2848-ENSGALP00000004840614 (aa)XP_015151236Q5ZJJ2
Gene Model
Click here to download ENSGALG00000003072's gene model file
Pathways
Pathway IDPathway NameSource
gga03030DNA replicationKEGG
gga03420Nucleotide excision repairKEGG
gga03430Mismatch repairKEGG
gga03440Homologous recombinationKEGG
gga03460Fanconi anemia pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSGALG00000003072's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSGALG00000003072RPA19461.638ENSAPOG00000019409RPA18761.638Acanthochromis_polyacanthus
ENSGALG00000003072RPA19960.526ENSAPOG00000011658rpa19960.659Acanthochromis_polyacanthus
ENSGALG00000003072RPA19974.430ENSAMEG00000007706RPA19974.430Ailuropoda_melanoleuca
ENSGALG00000003072RPA19556.388ENSACIG00000007277rpa19956.388Amphilophus_citrinellus
ENSGALG00000003072RPA19556.661ENSACIG00000012881RPA110056.661Amphilophus_citrinellus
ENSGALG00000003072RPA19961.349ENSAOCG00000023376rpa19961.872Amphiprion_ocellaris
ENSGALG00000003072RPA19953.670ENSAOCG00000009003RPA19954.154Amphiprion_ocellaris
ENSGALG00000003072RPA19952.915ENSAPEG00000019132RPA19953.513Amphiprion_percula
ENSGALG00000003072RPA19961.184ENSAPEG00000008634rpa19961.698Amphiprion_percula
ENSGALG00000003072RPA19955.099ENSATEG00000006443RPA19955.099Anabas_testudineus
ENSGALG00000003072RPA19462.329ENSATEG00000022024rpa19962.329Anabas_testudineus
ENSGALG00000003072RPA19879.970ENSAPLG00000012442RPA110079.970Anas_platyrhynchos
ENSGALG00000003072RPA19966.288ENSACAG00000014490RPA19967.044Anolis_carolinensis
ENSGALG00000003072RPA19873.675ENSANAG00000023456RPA110073.675Aotus_nancymaae
ENSGALG00000003072RPA19955.573ENSACLG00000005223RPA110055.573Astatotilapia_calliptera
ENSGALG00000003072RPA19363.287ENSACLG00000006640rpa19962.762Astatotilapia_calliptera
ENSGALG00000003072RPA19960.848ENSAMXG00000008418rpa19961.138Astyanax_mexicanus
ENSGALG00000003072RPA19975.365ENSBTAG00000009711RPA110075.365Bos_taurus
ENSGALG00000003072RPA18030.040WBGene00017546rpa-17330.584Caenorhabditis_elegans
ENSGALG00000003072RPA19973.906ENSCJAG00000001848RPA110073.906Callithrix_jacchus
ENSGALG00000003072RPA19974.230ENSCAFG00000019249RPA110074.230Canis_familiaris
ENSGALG00000003072RPA19974.230ENSCAFG00020009847RPA110074.230Canis_lupus_dingo
ENSGALG00000003072RPA19974.716ENSCHIG00000026308RPA110074.716Capra_hircus
ENSGALG00000003072RPA19975.081ENSTSYG00000003482-10075.081Carlito_syrichta
ENSGALG00000003072RPA19973.744ENSCPOG00000000035RPA110073.744Cavia_porcellus
ENSGALG00000003072RPA19962.258ENSCCAG00000010981RPA110062.258Cebus_capucinus
ENSGALG00000003072RPA19974.797ENSCLAG00000005185-9974.797Chinchilla_lanigera
ENSGALG00000003072RPA19970.340ENSCLAG00000015045-10070.340Chinchilla_lanigera
ENSGALG00000003072RPA19962.581ENSCSAG00000013833RPA110062.581Chlorocebus_sabaeus
ENSGALG00000003072RPA19572.666ENSCHOG00000013540-10072.666Choloepus_hoffmanni
ENSGALG00000003072RPA17179.271ENSCHOG00000009454-10079.271Choloepus_hoffmanni
ENSGALG00000003072RPA110085.413ENSCPBG00000020377RPA110085.413Chrysemys_picta_bellii
ENSGALG00000003072RPA19941.408ENSCING00000023482-9941.408Ciona_intestinalis
ENSGALG00000003072RPA19872.968ENSCANG00000030911RPA110072.968Colobus_angolensis_palliatus
ENSGALG00000003072RPA19975.121ENSCGRG00001008197Rpa19975.121Cricetulus_griseus_chok1gshd
ENSGALG00000003072RPA18274.460ENSCGRG00000000582Rpa19974.460Cricetulus_griseus_crigri
ENSGALG00000003072RPA19958.958ENSCSEG00000013066rpa19958.958Cynoglossus_semilaevis
ENSGALG00000003072RPA19952.941ENSCSEG00000012726RPA19853.596Cynoglossus_semilaevis
ENSGALG00000003072RPA19963.218ENSCVAG00000019431rpa19963.383Cyprinodon_variegatus
ENSGALG00000003072RPA19451.562ENSCVAG00000013446-9551.562Cyprinodon_variegatus
ENSGALG00000003072RPA19961.664ENSDARG00000003938rpa19961.664Danio_rerio
ENSGALG00000003072RPA19875.658ENSDNOG00000017218RPA19875.658Dasypus_novemcinctus
ENSGALG00000003072RPA19974.392ENSDORG00000006199Rpa110074.392Dipodomys_ordii
ENSGALG00000003072RPA19940.777FBgn0010173RpA-709941.262Drosophila_melanogaster
ENSGALG00000003072RPA18272.632ENSETEG00000017608RPA18272.632Echinops_telfairi
ENSGALG00000003072RPA19874.794ENSEASG00005009372RPA110073.544Equus_asinus_asinus
ENSGALG00000003072RPA19975.693ENSECAG00000023886RPA19975.693Equus_caballus
ENSGALG00000003072RPA16877.619ENSEEUG00000002186-6877.619Erinaceus_europaeus
ENSGALG00000003072RPA18856.747ENSELUG00000006136RPA19956.747Esox_lucius
ENSGALG00000003072RPA19961.201ENSELUG00000021071rpa19961.364Esox_lucius
ENSGALG00000003072RPA19974.272ENSFCAG00000006306RPA19974.272Felis_catus
ENSGALG00000003072RPA110091.234ENSFALG00000006575RPA110091.234Ficedula_albicollis
ENSGALG00000003072RPA19974.026ENSFDAG00000007720RPA110074.026Fukomys_damarensis
ENSGALG00000003072RPA19961.653ENSFHEG00000003580rpa19961.653Fundulus_heteroclitus
ENSGALG00000003072RPA19958.033ENSGMOG00000010382rpa19958.033Gadus_morhua
ENSGALG00000003072RPA19861.741ENSGAFG00000012916rpa19961.741Gambusia_affinis
ENSGALG00000003072RPA19953.263ENSGAFG00000020953RPA110053.263Gambusia_affinis
ENSGALG00000003072RPA19961.184ENSGACG00000010856rpa19961.184Gasterosteus_aculeatus
ENSGALG00000003072RPA110085.089ENSGAGG00000013611RPA110085.089Gopherus_agassizii
ENSGALG00000003072RPA19972.964ENSGGOG00000014186RPA110072.964Gorilla_gorilla
ENSGALG00000003072RPA19962.562ENSHBUG00000017773rpa19962.562Haplochromis_burtoni
ENSGALG00000003072RPA19651.510ENSHBUG00000009348RPA19951.510Haplochromis_burtoni
ENSGALG00000003072RPA19974.146ENSHGLG00000008846RPA110074.309Heterocephalus_glaber_female
ENSGALG00000003072RPA19974.146ENSHGLG00100017755-10074.309Heterocephalus_glaber_male
ENSGALG00000003072RPA19962.764ENSHGLG00100002005-10062.723Heterocephalus_glaber_male
ENSGALG00000003072RPA19969.044ENSHGLG00100000799-10069.044Heterocephalus_glaber_male
ENSGALG00000003072RPA19943.922ENSHCOG00000000351RPA19943.639Hippocampus_comes
ENSGALG00000003072RPA19957.610ENSHCOG00000001401rpa19957.938Hippocampus_comes
ENSGALG00000003072RPA19961.165ENSIPUG00000004400rpa19961.327Ictalurus_punctatus
ENSGALG00000003072RPA19869.294ENSSTOG00000022475RPA19869.294Ictidomys_tridecemlineatus
ENSGALG00000003072RPA19574.533ENSJJAG00000000876Rpa19874.533Jaculus_jaculus
ENSGALG00000003072RPA19960.749ENSKMAG00000005605rpa19960.848Kryptolebias_marmoratus
ENSGALG00000003072RPA19954.295ENSKMAG00000000234RPA110054.295Kryptolebias_marmoratus
ENSGALG00000003072RPA19961.248ENSLBEG00000021604rpa19961.248Labrus_bergylta
ENSGALG00000003072RPA19963.261ENSLBEG00000002281RPA18463.261Labrus_bergylta
ENSGALG00000003072RPA18164.741ENSLACG00000007210RPA19964.741Latimeria_chalumnae
ENSGALG00000003072RPA19964.484ENSLOCG00000006397rpa19964.484Lepisosteus_oculatus
ENSGALG00000003072RPA19974.235ENSLAFG00000015354RPA19974.235Loxodonta_africana
ENSGALG00000003072RPA18274.704ENSMFAG00000036138-9974.704Macaca_fascicularis
ENSGALG00000003072RPA19874.422ENSMMUG00000011604-10074.422Macaca_mulatta
ENSGALG00000003072RPA19967.909ENSMMUG00000002442-10067.909Macaca_mulatta
ENSGALG00000003072RPA18872.246ENSMNEG00000029837-9972.246Macaca_nemestrina
ENSGALG00000003072RPA19972.403ENSMNEG00000031632-10072.403Macaca_nemestrina
ENSGALG00000003072RPA19869.357ENSMLEG00000038768-10069.357Mandrillus_leucophaeus
ENSGALG00000003072RPA19862.269ENSMAMG00000020097RPA19060.938Mastacembelus_armatus
ENSGALG00000003072RPA19961.184ENSMAMG00000017993rpa19961.184Mastacembelus_armatus
ENSGALG00000003072RPA19962.890ENSMZEG00005007551rpa19962.890Maylandia_zebra
ENSGALG00000003072RPA19955.573ENSMZEG00005024731RPA110055.573Maylandia_zebra
ENSGALG00000003072RPA19997.876ENSMGAG00000005315RPA19997.876Meleagris_gallopavo
ENSGALG00000003072RPA19774.875ENSMAUG00000010474Rpa19974.875Mesocricetus_auratus
ENSGALG00000003072RPA19974.554ENSMICG00000012867RPA110074.554Microcebus_murinus
ENSGALG00000003072RPA19973.616ENSMOCG00000013019Rpa19973.616Microtus_ochrogaster
ENSGALG00000003072RPA19960.033ENSMMOG00000014292rpa19961.290Mola_mola
ENSGALG00000003072RPA19855.132ENSMMOG00000010868RPA19861.136Mola_mola
ENSGALG00000003072RPA19977.886ENSMODG00000010549RPA19977.886Monodelphis_domestica
ENSGALG00000003072RPA19961.551ENSMALG00000011453rpa19961.716Monopterus_albus
ENSGALG00000003072RPA19661.039ENSMALG00000001208RPA18161.039Monopterus_albus
ENSGALG00000003072RPA19973.420MGP_CAROLIEiJ_G0016734Rpa19973.420Mus_caroli
ENSGALG00000003072RPA19971.589ENSMUSG00000000751Rpa19971.589Mus_musculus
ENSGALG00000003072RPA19973.226MGP_PahariEiJ_G0017871Rpa19973.226Mus_pahari
ENSGALG00000003072RPA19971.474MGP_SPRETEiJ_G0017577Rpa19971.474Mus_spretus
ENSGALG00000003072RPA19975.365ENSMPUG00000013119RPA110075.365Mustela_putorius_furo
ENSGALG00000003072RPA19972.508ENSMLUG00000006113RPA110072.508Myotis_lucifugus
ENSGALG00000003072RPA19574.915ENSNGAG00000004522Rpa19474.915Nannospalax_galili
ENSGALG00000003072RPA19854.305ENSNBRG00000009672RPA19754.305Neolamprologus_brichardi
ENSGALG00000003072RPA19462.912ENSNBRG00000020595rpa19962.912Neolamprologus_brichardi
ENSGALG00000003072RPA19973.744ENSNLEG00000017149RPA110073.906Nomascus_leucogenys
ENSGALG00000003072RPA19866.501ENSMEUG00000006714RPA19966.501Notamacropus_eugenii
ENSGALG00000003072RPA19573.746ENSODEG00000009038RPA19673.746Octodon_degus
ENSGALG00000003072RPA19963.889ENSONIG00000013135rpa19963.889Oreochromis_niloticus
ENSGALG00000003072RPA19877.114ENSOANG00000010880RPA19977.114Ornithorhynchus_anatinus
ENSGALG00000003072RPA19971.870ENSOCUG00000001504RPA110071.870Oryctolagus_cuniculus
ENSGALG00000003072RPA19960.591ENSORLG00000004856rpa19960.591Oryzias_latipes
ENSGALG00000003072RPA19953.120ENSORLG00000003368RPA19953.120Oryzias_latipes
ENSGALG00000003072RPA19960.591ENSORLG00020008980rpa19960.591Oryzias_latipes_hni
ENSGALG00000003072RPA19951.946ENSORLG00020015284RPA19951.946Oryzias_latipes_hni
ENSGALG00000003072RPA16861.905ENSORLG00015005867-9661.905Oryzias_latipes_hsok
ENSGALG00000003072RPA19953.333ENSORLG00015020383RPA19953.333Oryzias_latipes_hsok
ENSGALG00000003072RPA19960.591ENSORLG00015013982rpa19960.591Oryzias_latipes_hsok
ENSGALG00000003072RPA19959.704ENSOMEG00000004704rpa19959.704Oryzias_melastigma
ENSGALG00000003072RPA19854.106ENSOMEG00000011040RPA19956.799Oryzias_melastigma
ENSGALG00000003072RPA19974.230ENSOGAG00000005581-10074.230Otolemur_garnettii
ENSGALG00000003072RPA19471.329ENSOGAG00000029379-10076.190Otolemur_garnettii
ENSGALG00000003072RPA19974.878ENSOARG00000014479RPA110074.878Ovis_aries
ENSGALG00000003072RPA19974.230ENSPPAG00000039680RPA110074.392Pan_paniscus
ENSGALG00000003072RPA19974.434ENSPPRG00000011807RPA19974.434Panthera_pardus
ENSGALG00000003072RPA19974.595ENSPTIG00000007898RPA19974.595Panthera_tigris_altaica
ENSGALG00000003072RPA19974.230ENSPTRG00000008539RPA110074.392Pan_troglodytes
ENSGALG00000003072RPA19974.554ENSPANG00000024592RPA110074.554Papio_anubis
ENSGALG00000003072RPA19461.274ENSPKIG00000008053rpa19461.945Paramormyrops_kingsleyae
ENSGALG00000003072RPA19883.940ENSPSIG00000015617RPA110083.940Pelodiscus_sinensis
ENSGALG00000003072RPA19959.770ENSPMGG00000011589rpa19959.934Periophthalmus_magnuspinnatus
ENSGALG00000003072RPA19953.084ENSPMGG00000000543RPA19955.319Periophthalmus_magnuspinnatus
ENSGALG00000003072RPA19974.267ENSPEMG00000021061Rpa19974.267Peromyscus_maniculatus_bairdii
ENSGALG00000003072RPA19976.052ENSPCIG00000019049RPA19976.375Phascolarctos_cinereus
ENSGALG00000003072RPA19862.086ENSPFOG00000003987rpa19962.086Poecilia_formosa
ENSGALG00000003072RPA19861.818ENSPLAG00000004984rpa19961.818Poecilia_latipinna
ENSGALG00000003072RPA19453.140ENSPLAG00000008844-9753.140Poecilia_latipinna
ENSGALG00000003072RPA19453.140ENSPMEG00000003627-9753.140Poecilia_mexicana
ENSGALG00000003072RPA19862.086ENSPMEG00000020602rpa19962.086Poecilia_mexicana
ENSGALG00000003072RPA19951.327ENSPREG00000010119RPA110051.393Poecilia_reticulata
ENSGALG00000003072RPA19455.286ENSPREG00000010174rpa19655.286Poecilia_reticulata
ENSGALG00000003072RPA19974.068ENSPCOG00000001799RPA110074.068Propithecus_coquereli
ENSGALG00000003072RPA19974.146ENSPVAG00000002149RPA110073.906Pteropus_vampyrus
ENSGALG00000003072RPA19962.726ENSPNYG00000016316rpa19963.240Pundamilia_nyererei
ENSGALG00000003072RPA19955.263ENSPNYG00000024165RPA110055.263Pundamilia_nyererei
ENSGALG00000003072RPA19854.785ENSPNAG00000008599rpa19952.866Pygocentrus_nattereri
ENSGALG00000003072RPA19974.756ENSRNOG00000003123Rpa19975.244Rattus_norvegicus
ENSGALG00000003072RPA19974.716ENSRBIG00000036587RPA110074.716Rhinopithecus_bieti
ENSGALG00000003072RPA19970.340ENSRROG00000043278RPA110070.340Rhinopithecus_roxellana
ENSGALG00000003072RPA19832.695YAR007CRFA19932.695Saccharomyces_cerevisiae
ENSGALG00000003072RPA19174.733ENSSBOG00000030233RPA19774.733Saimiri_boliviensis_boliviensis
ENSGALG00000003072RPA19976.596ENSSHAG00000007969RPA19876.759Sarcophilus_harrisii
ENSGALG00000003072RPA19962.726ENSSFOG00015005362rpa19262.726Scleropages_formosus
ENSGALG00000003072RPA19952.568ENSSMAG00000019746RPA19952.568Scophthalmus_maximus
ENSGALG00000003072RPA19961.513ENSSDUG00000011949rpa19961.513Seriola_dumerili
ENSGALG00000003072RPA19951.982ENSSDUG00000016358RPA19953.010Seriola_dumerili
ENSGALG00000003072RPA19961.678ENSSLDG00000011806rpa19961.678Seriola_lalandi_dorsalis
ENSGALG00000003072RPA19948.977ENSSLDG00000020784RPA18763.755Seriola_lalandi_dorsalis
ENSGALG00000003072RPA18785.294ENSSARG00000007506RPA18985.294Sorex_araneus
ENSGALG00000003072RPA19878.607ENSSPUG00000007223RPA110078.607Sphenodon_punctatus
ENSGALG00000003072RPA19956.650ENSSPAG00000011165RPA19956.650Stegastes_partitus
ENSGALG00000003072RPA19961.349ENSSPAG00000009903rpa19961.349Stegastes_partitus
ENSGALG00000003072RPA19875.166ENSSSCG00000017822RPA110075.166Sus_scrofa
ENSGALG00000003072RPA110091.857ENSTGUG00000005775RPA110091.857Taeniopygia_guttata
ENSGALG00000003072RPA19962.211ENSTRUG00000003616rpa19962.211Takifugu_rubripes
ENSGALG00000003072RPA19955.747ENSTRUG00000000405RPA18861.707Takifugu_rubripes
ENSGALG00000003072RPA19962.500ENSTNIG00000016199rpa19962.397Tetraodon_nigroviridis
ENSGALG00000003072RPA17978.685ENSTBEG00000002709RPA18178.685Tupaia_belangeri
ENSGALG00000003072RPA19975.610ENSTTRG00000001169RPA19975.610Tursiops_truncatus
ENSGALG00000003072RPA18886.275ENSUAMG00000015676RPA19786.275Ursus_americanus
ENSGALG00000003072RPA19975.041ENSUMAG00000009328RPA110075.041Ursus_maritimus
ENSGALG00000003072RPA19973.892ENSVPAG00000009443RPA19973.892Vicugna_pacos
ENSGALG00000003072RPA19974.230ENSVVUG00000021715RPA110074.230Vulpes_vulpes
ENSGALG00000003072RPA19969.417ENSXETG00000013538rpa19969.579Xenopus_tropicalis
ENSGALG00000003072RPA19360.070ENSXCOG00000010068rpa19461.372Xiphophorus_couchianus
ENSGALG00000003072RPA19555.575ENSXCOG00000009899-9955.575Xiphophorus_couchianus
ENSGALG00000003072RPA19859.006ENSXMAG00000010333RPA18959.006Xiphophorus_maculatus
ENSGALG00000003072RPA19860.920ENSXMAG00000004102rpa19961.754Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000723telomere maintenance21873635.IBAProcess
GO:0000724double-strand break repair via homologous recombination21873635.IBAProcess
GO:0000724double-strand break repair via homologous recombination-TASProcess
GO:0000784nuclear chromosome, telomeric region21873635.IBAComponent
GO:0003684damaged DNA binding21873635.IBAFunction
GO:0003684damaged DNA binding-ISSFunction
GO:0003697single-stranded DNA binding21873635.IBAFunction
GO:0003697single-stranded DNA binding-ISSFunction
GO:0005634nucleus-ISSComponent
GO:0005654nucleoplasm-TASComponent
GO:0005662DNA replication factor A complex21873635.IBAComponent
GO:0005662DNA replication factor A complex-ISSComponent
GO:0006260DNA replication-ISSProcess
GO:0006261DNA-dependent DNA replication21873635.IBAProcess
GO:0006268DNA unwinding involved in DNA replication21873635.IBAProcess
GO:0006281DNA repair21873635.IBAProcess
GO:0006281DNA repair-TASProcess
GO:0006284base-excision repair-IEAProcess
GO:0006289nucleotide-excision repair21873635.IBAProcess
GO:0006298mismatch repair-IEAProcess
GO:0007004telomere maintenance via telomerase21873635.IBAProcess
GO:0016605PML body-IEAComponent
GO:0034502protein localization to chromosome-ISSProcess
GO:0043047single-stranded telomeric DNA binding21873635.IBAFunction
GO:0043565sequence-specific DNA binding21873635.IBAFunction
GO:0046872metal ion binding-IEAFunction
GO:0051321meiotic cell cycle21873635.IBAProcess
GO:0090734site of DNA damage-IEAComponent
GO:0098505G-rich strand telomeric DNA binding-IEAFunction

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