EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSGALG00000003072 (Gene tree)
Gene ID
417563
Gene Symbol
RPA1
Alias
-
Full Name
Gallus gallus replication protein A1 (RPA1)%2C mRNA.
Gene Type
protein_coding
Species
Gallus_gallus
Status
putative
Strand
Plus strand
Length
21528 bases
Position
chr19:5568657-5590184
Accession
NM_001006221
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSGALP00000004840tRNA_anti-codonPF01336.254.1e-1211
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSGALT00000004849-2848-ENSGALP00000004840614 (aa)XP_015151236Q5ZJJ2
Gene Model
Click here to download ENSGALG00000003072's gene model file
Pathways
Pathway IDPathway NameSource
gga03030DNA replicationKEGG
gga03420Nucleotide excision repairKEGG
gga03430Mismatch repairKEGG
gga03440Homologous recombinationKEGG
gga03460Fanconi anemia pathwayKEGG
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSGALG00000003072RPA19461.638ENSAPOG00000019409RPA18761.638Acanthochromis_polyacanthus
ENSGALG00000003072RPA19960.526ENSAPOG00000011658rpa19960.659Acanthochromis_polyacanthus
ENSGALG00000003072RPA19974.430ENSAMEG00000007706RPA19974.430Ailuropoda_melanoleuca
ENSGALG00000003072RPA19556.388ENSACIG00000007277rpa19956.388Amphilophus_citrinellus
ENSGALG00000003072RPA19556.661ENSACIG00000012881RPA110056.661Amphilophus_citrinellus
ENSGALG00000003072RPA19961.349ENSAOCG00000023376rpa19961.872Amphiprion_ocellaris
ENSGALG00000003072RPA19953.670ENSAOCG00000009003RPA19954.154Amphiprion_ocellaris
ENSGALG00000003072RPA19952.915ENSAPEG00000019132RPA19953.513Amphiprion_percula
ENSGALG00000003072RPA19961.184ENSAPEG00000008634rpa19961.698Amphiprion_percula
ENSGALG00000003072RPA19955.099ENSATEG00000006443RPA19955.099Anabas_testudineus
ENSGALG00000003072RPA19462.329ENSATEG00000022024rpa19962.329Anabas_testudineus
ENSGALG00000003072RPA19879.970ENSAPLG00000012442RPA110079.970Anas_platyrhynchos
ENSGALG00000003072RPA19966.288ENSACAG00000014490RPA19967.044Anolis_carolinensis
ENSGALG00000003072RPA19873.675ENSANAG00000023456RPA110073.675Aotus_nancymaae
ENSGALG00000003072RPA19955.573ENSACLG00000005223RPA110055.573Astatotilapia_calliptera
ENSGALG00000003072RPA19363.287ENSACLG00000006640rpa19962.762Astatotilapia_calliptera
ENSGALG00000003072RPA19960.848ENSAMXG00000008418rpa19961.138Astyanax_mexicanus
ENSGALG00000003072RPA19975.365ENSBTAG00000009711RPA110075.365Bos_taurus
ENSGALG00000003072RPA18030.040WBGene00017546rpa-17330.584Caenorhabditis_elegans
ENSGALG00000003072RPA19973.906ENSCJAG00000001848RPA110073.906Callithrix_jacchus
ENSGALG00000003072RPA19974.230ENSCAFG00000019249RPA110074.230Canis_familiaris
ENSGALG00000003072RPA19974.230ENSCAFG00020009847RPA110074.230Canis_lupus_dingo
ENSGALG00000003072RPA19974.716ENSCHIG00000026308RPA110074.716Capra_hircus
ENSGALG00000003072RPA19975.081ENSTSYG00000003482-10075.081Carlito_syrichta
ENSGALG00000003072RPA19973.744ENSCPOG00000000035RPA110073.744Cavia_porcellus
ENSGALG00000003072RPA19962.258ENSCCAG00000010981RPA110062.258Cebus_capucinus
ENSGALG00000003072RPA19974.797ENSCLAG00000005185-9974.797Chinchilla_lanigera
ENSGALG00000003072RPA19970.340ENSCLAG00000015045-10070.340Chinchilla_lanigera
ENSGALG00000003072RPA19962.581ENSCSAG00000013833RPA110062.581Chlorocebus_sabaeus
ENSGALG00000003072RPA19572.666ENSCHOG00000013540-10072.666Choloepus_hoffmanni
ENSGALG00000003072RPA17179.271ENSCHOG00000009454-10079.271Choloepus_hoffmanni
ENSGALG00000003072RPA110085.413ENSCPBG00000020377RPA110085.413Chrysemys_picta_bellii
ENSGALG00000003072RPA19941.408ENSCING00000023482-9941.408Ciona_intestinalis
ENSGALG00000003072RPA19872.968ENSCANG00000030911RPA110072.968Colobus_angolensis_palliatus
ENSGALG00000003072RPA19975.121ENSCGRG00001008197Rpa19975.121Cricetulus_griseus_chok1gshd
ENSGALG00000003072RPA18274.460ENSCGRG00000000582Rpa19974.460Cricetulus_griseus_crigri
ENSGALG00000003072RPA19958.958ENSCSEG00000013066rpa19958.958Cynoglossus_semilaevis
ENSGALG00000003072RPA19952.941ENSCSEG00000012726RPA19853.596Cynoglossus_semilaevis
ENSGALG00000003072RPA19963.218ENSCVAG00000019431rpa19963.383Cyprinodon_variegatus
ENSGALG00000003072RPA19451.562ENSCVAG00000013446-9551.562Cyprinodon_variegatus
ENSGALG00000003072RPA19961.664ENSDARG00000003938rpa19961.664Danio_rerio
ENSGALG00000003072RPA19875.658ENSDNOG00000017218RPA19875.658Dasypus_novemcinctus
ENSGALG00000003072RPA19974.392ENSDORG00000006199Rpa110074.392Dipodomys_ordii
ENSGALG00000003072RPA19940.777FBgn0010173RpA-709941.262Drosophila_melanogaster
ENSGALG00000003072RPA18272.632ENSETEG00000017608RPA18272.632Echinops_telfairi
ENSGALG00000003072RPA19874.794ENSEASG00005009372RPA110073.544Equus_asinus_asinus
ENSGALG00000003072RPA19975.693ENSECAG00000023886RPA19975.693Equus_caballus
ENSGALG00000003072RPA16877.619ENSEEUG00000002186-6877.619Erinaceus_europaeus
ENSGALG00000003072RPA18856.747ENSELUG00000006136RPA19956.747Esox_lucius
ENSGALG00000003072RPA19961.201ENSELUG00000021071rpa19961.364Esox_lucius
ENSGALG00000003072RPA19974.272ENSFCAG00000006306RPA19974.272Felis_catus
ENSGALG00000003072RPA110091.234ENSFALG00000006575RPA110091.234Ficedula_albicollis
ENSGALG00000003072RPA19974.026ENSFDAG00000007720RPA110074.026Fukomys_damarensis
ENSGALG00000003072RPA19961.653ENSFHEG00000003580rpa19961.653Fundulus_heteroclitus
ENSGALG00000003072RPA19958.033ENSGMOG00000010382rpa19958.033Gadus_morhua
ENSGALG00000003072RPA19861.741ENSGAFG00000012916rpa19961.741Gambusia_affinis
ENSGALG00000003072RPA19953.263ENSGAFG00000020953RPA110053.263Gambusia_affinis
ENSGALG00000003072RPA19961.184ENSGACG00000010856rpa19961.184Gasterosteus_aculeatus
ENSGALG00000003072RPA110085.089ENSGAGG00000013611RPA110085.089Gopherus_agassizii
ENSGALG00000003072RPA19972.964ENSGGOG00000014186RPA110072.964Gorilla_gorilla
ENSGALG00000003072RPA19962.562ENSHBUG00000017773rpa19962.562Haplochromis_burtoni
ENSGALG00000003072RPA19651.510ENSHBUG00000009348RPA19951.510Haplochromis_burtoni
ENSGALG00000003072RPA19974.146ENSHGLG00000008846RPA110074.309Heterocephalus_glaber_female
ENSGALG00000003072RPA19974.146ENSHGLG00100017755-10074.309Heterocephalus_glaber_male
ENSGALG00000003072RPA19962.764ENSHGLG00100002005-10062.723Heterocephalus_glaber_male
ENSGALG00000003072RPA19969.044ENSHGLG00100000799-10069.044Heterocephalus_glaber_male
ENSGALG00000003072RPA19943.922ENSHCOG00000000351RPA19943.639Hippocampus_comes
ENSGALG00000003072RPA19957.610ENSHCOG00000001401rpa19957.938Hippocampus_comes
ENSGALG00000003072RPA19961.165ENSIPUG00000004400rpa19961.327Ictalurus_punctatus
ENSGALG00000003072RPA19869.294ENSSTOG00000022475RPA19869.294Ictidomys_tridecemlineatus
ENSGALG00000003072RPA19574.533ENSJJAG00000000876Rpa19874.533Jaculus_jaculus
ENSGALG00000003072RPA19960.749ENSKMAG00000005605rpa19960.848Kryptolebias_marmoratus
ENSGALG00000003072RPA19954.295ENSKMAG00000000234RPA110054.295Kryptolebias_marmoratus
ENSGALG00000003072RPA19961.248ENSLBEG00000021604rpa19961.248Labrus_bergylta
ENSGALG00000003072RPA19963.261ENSLBEG00000002281RPA18463.261Labrus_bergylta
ENSGALG00000003072RPA18164.741ENSLACG00000007210RPA19964.741Latimeria_chalumnae
ENSGALG00000003072RPA19964.484ENSLOCG00000006397rpa19964.484Lepisosteus_oculatus
ENSGALG00000003072RPA19974.235ENSLAFG00000015354RPA19974.235Loxodonta_africana
ENSGALG00000003072RPA18274.704ENSMFAG00000036138-9974.704Macaca_fascicularis
ENSGALG00000003072RPA19874.422ENSMMUG00000011604-10074.422Macaca_mulatta
ENSGALG00000003072RPA19967.909ENSMMUG00000002442-10067.909Macaca_mulatta
ENSGALG00000003072RPA18872.246ENSMNEG00000029837-9972.246Macaca_nemestrina
ENSGALG00000003072RPA19972.403ENSMNEG00000031632-10072.403Macaca_nemestrina
ENSGALG00000003072RPA19869.357ENSMLEG00000038768-10069.357Mandrillus_leucophaeus
ENSGALG00000003072RPA19862.269ENSMAMG00000020097RPA19060.938Mastacembelus_armatus
ENSGALG00000003072RPA19961.184ENSMAMG00000017993rpa19961.184Mastacembelus_armatus
ENSGALG00000003072RPA19962.890ENSMZEG00005007551rpa19962.890Maylandia_zebra
ENSGALG00000003072RPA19955.573ENSMZEG00005024731RPA110055.573Maylandia_zebra
ENSGALG00000003072RPA19997.876ENSMGAG00000005315RPA19997.876Meleagris_gallopavo
ENSGALG00000003072RPA19774.875ENSMAUG00000010474Rpa19974.875Mesocricetus_auratus
ENSGALG00000003072RPA19974.554ENSMICG00000012867RPA110074.554Microcebus_murinus
ENSGALG00000003072RPA19973.616ENSMOCG00000013019Rpa19973.616Microtus_ochrogaster
ENSGALG00000003072RPA19960.033ENSMMOG00000014292rpa19961.290Mola_mola
ENSGALG00000003072RPA19855.132ENSMMOG00000010868RPA19861.136Mola_mola
ENSGALG00000003072RPA19977.886ENSMODG00000010549RPA19977.886Monodelphis_domestica
ENSGALG00000003072RPA19961.551ENSMALG00000011453rpa19961.716Monopterus_albus
ENSGALG00000003072RPA19661.039ENSMALG00000001208RPA18161.039Monopterus_albus
ENSGALG00000003072RPA19973.420MGP_CAROLIEiJ_G0016734Rpa19973.420Mus_caroli
ENSGALG00000003072RPA19971.589ENSMUSG00000000751Rpa19971.589Mus_musculus
ENSGALG00000003072RPA19973.226MGP_PahariEiJ_G0017871Rpa19973.226Mus_pahari
ENSGALG00000003072RPA19971.474MGP_SPRETEiJ_G0017577Rpa19971.474Mus_spretus
ENSGALG00000003072RPA19975.365ENSMPUG00000013119RPA110075.365Mustela_putorius_furo
ENSGALG00000003072RPA19972.508ENSMLUG00000006113RPA110072.508Myotis_lucifugus
ENSGALG00000003072RPA19574.915ENSNGAG00000004522Rpa19474.915Nannospalax_galili
ENSGALG00000003072RPA19854.305ENSNBRG00000009672RPA19754.305Neolamprologus_brichardi
ENSGALG00000003072RPA19462.912ENSNBRG00000020595rpa19962.912Neolamprologus_brichardi
ENSGALG00000003072RPA19973.744ENSNLEG00000017149RPA110073.906Nomascus_leucogenys
ENSGALG00000003072RPA19866.501ENSMEUG00000006714RPA19966.501Notamacropus_eugenii
ENSGALG00000003072RPA19573.746ENSODEG00000009038RPA19673.746Octodon_degus
ENSGALG00000003072RPA19963.889ENSONIG00000013135rpa19963.889Oreochromis_niloticus
ENSGALG00000003072RPA19877.114ENSOANG00000010880RPA19977.114Ornithorhynchus_anatinus
ENSGALG00000003072RPA19971.870ENSOCUG00000001504RPA110071.870Oryctolagus_cuniculus
ENSGALG00000003072RPA19960.591ENSORLG00000004856rpa19960.591Oryzias_latipes
ENSGALG00000003072RPA19953.120ENSORLG00000003368RPA19953.120Oryzias_latipes
ENSGALG00000003072RPA19960.591ENSORLG00020008980rpa19960.591Oryzias_latipes_hni
ENSGALG00000003072RPA19951.946ENSORLG00020015284RPA19951.946Oryzias_latipes_hni
ENSGALG00000003072RPA16861.905ENSORLG00015005867-9661.905Oryzias_latipes_hsok
ENSGALG00000003072RPA19953.333ENSORLG00015020383RPA19953.333Oryzias_latipes_hsok
ENSGALG00000003072RPA19960.591ENSORLG00015013982rpa19960.591Oryzias_latipes_hsok
ENSGALG00000003072RPA19959.704ENSOMEG00000004704rpa19959.704Oryzias_melastigma
ENSGALG00000003072RPA19854.106ENSOMEG00000011040RPA19956.799Oryzias_melastigma
ENSGALG00000003072RPA19974.230ENSOGAG00000005581-10074.230Otolemur_garnettii
ENSGALG00000003072RPA19471.329ENSOGAG00000029379-10076.190Otolemur_garnettii
ENSGALG00000003072RPA19974.878ENSOARG00000014479RPA110074.878Ovis_aries
ENSGALG00000003072RPA19974.230ENSPPAG00000039680RPA110074.392Pan_paniscus
ENSGALG00000003072RPA19974.434ENSPPRG00000011807RPA19974.434Panthera_pardus
ENSGALG00000003072RPA19974.595ENSPTIG00000007898RPA19974.595Panthera_tigris_altaica
ENSGALG00000003072RPA19974.230ENSPTRG00000008539RPA110074.392Pan_troglodytes
ENSGALG00000003072RPA19974.554ENSPANG00000024592RPA110074.554Papio_anubis
ENSGALG00000003072RPA19461.274ENSPKIG00000008053rpa19461.945Paramormyrops_kingsleyae
ENSGALG00000003072RPA19883.940ENSPSIG00000015617RPA110083.940Pelodiscus_sinensis
ENSGALG00000003072RPA19959.770ENSPMGG00000011589rpa19959.934Periophthalmus_magnuspinnatus
ENSGALG00000003072RPA19953.084ENSPMGG00000000543RPA19955.319Periophthalmus_magnuspinnatus
ENSGALG00000003072RPA19974.267ENSPEMG00000021061Rpa19974.267Peromyscus_maniculatus_bairdii
ENSGALG00000003072RPA19976.052ENSPCIG00000019049RPA19976.375Phascolarctos_cinereus
ENSGALG00000003072RPA19862.086ENSPFOG00000003987rpa19962.086Poecilia_formosa
ENSGALG00000003072RPA19861.818ENSPLAG00000004984rpa19961.818Poecilia_latipinna
ENSGALG00000003072RPA19453.140ENSPLAG00000008844-9753.140Poecilia_latipinna
ENSGALG00000003072RPA19453.140ENSPMEG00000003627-9753.140Poecilia_mexicana
ENSGALG00000003072RPA19862.086ENSPMEG00000020602rpa19962.086Poecilia_mexicana
ENSGALG00000003072RPA19951.327ENSPREG00000010119RPA110051.393Poecilia_reticulata
ENSGALG00000003072RPA19455.286ENSPREG00000010174rpa19655.286Poecilia_reticulata
ENSGALG00000003072RPA19974.068ENSPCOG00000001799RPA110074.068Propithecus_coquereli
ENSGALG00000003072RPA19974.146ENSPVAG00000002149RPA110073.906Pteropus_vampyrus
ENSGALG00000003072RPA19962.726ENSPNYG00000016316rpa19963.240Pundamilia_nyererei
ENSGALG00000003072RPA19955.263ENSPNYG00000024165RPA110055.263Pundamilia_nyererei
ENSGALG00000003072RPA19854.785ENSPNAG00000008599rpa19952.866Pygocentrus_nattereri
ENSGALG00000003072RPA19974.756ENSRNOG00000003123Rpa19975.244Rattus_norvegicus
ENSGALG00000003072RPA19974.716ENSRBIG00000036587RPA110074.716Rhinopithecus_bieti
ENSGALG00000003072RPA19970.340ENSRROG00000043278RPA110070.340Rhinopithecus_roxellana
ENSGALG00000003072RPA19832.695YAR007CRFA19932.695Saccharomyces_cerevisiae
ENSGALG00000003072RPA19174.733ENSSBOG00000030233RPA19774.733Saimiri_boliviensis_boliviensis
ENSGALG00000003072RPA19976.596ENSSHAG00000007969RPA19876.759Sarcophilus_harrisii
ENSGALG00000003072RPA19962.726ENSSFOG00015005362rpa19262.726Scleropages_formosus
ENSGALG00000003072RPA19952.568ENSSMAG00000019746RPA19952.568Scophthalmus_maximus
ENSGALG00000003072RPA19961.513ENSSDUG00000011949rpa19961.513Seriola_dumerili
ENSGALG00000003072RPA19951.982ENSSDUG00000016358RPA19953.010Seriola_dumerili
ENSGALG00000003072RPA19961.678ENSSLDG00000011806rpa19961.678Seriola_lalandi_dorsalis
ENSGALG00000003072RPA19948.977ENSSLDG00000020784RPA18763.755Seriola_lalandi_dorsalis
ENSGALG00000003072RPA18785.294ENSSARG00000007506RPA18985.294Sorex_araneus
ENSGALG00000003072RPA19878.607ENSSPUG00000007223RPA110078.607Sphenodon_punctatus
ENSGALG00000003072RPA19956.650ENSSPAG00000011165RPA19956.650Stegastes_partitus
ENSGALG00000003072RPA19961.349ENSSPAG00000009903rpa19961.349Stegastes_partitus
ENSGALG00000003072RPA19875.166ENSSSCG00000017822RPA110075.166Sus_scrofa
ENSGALG00000003072RPA110091.857ENSTGUG00000005775RPA110091.857Taeniopygia_guttata
ENSGALG00000003072RPA19962.211ENSTRUG00000003616rpa19962.211Takifugu_rubripes
ENSGALG00000003072RPA19955.747ENSTRUG00000000405RPA18861.707Takifugu_rubripes
ENSGALG00000003072RPA19962.500ENSTNIG00000016199rpa19962.397Tetraodon_nigroviridis
ENSGALG00000003072RPA17978.685ENSTBEG00000002709RPA18178.685Tupaia_belangeri
ENSGALG00000003072RPA19975.610ENSTTRG00000001169RPA19975.610Tursiops_truncatus
ENSGALG00000003072RPA18886.275ENSUAMG00000015676RPA19786.275Ursus_americanus
ENSGALG00000003072RPA19975.041ENSUMAG00000009328RPA110075.041Ursus_maritimus
ENSGALG00000003072RPA19973.892ENSVPAG00000009443RPA19973.892Vicugna_pacos
ENSGALG00000003072RPA19974.230ENSVVUG00000021715RPA110074.230Vulpes_vulpes
ENSGALG00000003072RPA19969.417ENSXETG00000013538rpa19969.579Xenopus_tropicalis
ENSGALG00000003072RPA19360.070ENSXCOG00000010068rpa19461.372Xiphophorus_couchianus
ENSGALG00000003072RPA19555.575ENSXCOG00000009899-9955.575Xiphophorus_couchianus
ENSGALG00000003072RPA19859.006ENSXMAG00000010333RPA18959.006Xiphophorus_maculatus
ENSGALG00000003072RPA19860.920ENSXMAG00000004102rpa19961.754Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000723telomere maintenance21873635.IBAProcess
GO:0000724double-strand break repair via homologous recombination21873635.IBAProcess
GO:0000724double-strand break repair via homologous recombination-TASProcess
GO:0000784nuclear chromosome, telomeric region21873635.IBAComponent
GO:0003684damaged DNA binding21873635.IBAFunction
GO:0003684damaged DNA binding-ISSFunction
GO:0003697single-stranded DNA binding21873635.IBAFunction
GO:0003697single-stranded DNA binding-ISSFunction
GO:0005634nucleus-ISSComponent
GO:0005654nucleoplasm-TASComponent
GO:0005662DNA replication factor A complex21873635.IBAComponent
GO:0005662DNA replication factor A complex-ISSComponent
GO:0006260DNA replication-ISSProcess
GO:0006261DNA-dependent DNA replication21873635.IBAProcess
GO:0006268DNA unwinding involved in DNA replication21873635.IBAProcess
GO:0006281DNA repair21873635.IBAProcess
GO:0006281DNA repair-TASProcess
GO:0006284base-excision repair-IEAProcess
GO:0006289nucleotide-excision repair21873635.IBAProcess
GO:0006298mismatch repair-IEAProcess
GO:0007004telomere maintenance via telomerase21873635.IBAProcess
GO:0016605PML body-IEAComponent
GO:0034502protein localization to chromosome-ISSProcess
GO:0043047single-stranded telomeric DNA binding21873635.IBAFunction
GO:0043565sequence-specific DNA binding21873635.IBAFunction
GO:0046872metal ion binding-IEAFunction
GO:0051321meiotic cell cycle21873635.IBAProcess
GO:0090734site of DNA damage-IEAComponent
GO:0098505G-rich strand telomeric DNA binding-IEAFunction

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