EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSGALG00000003108 (Gene tree)
Gene ID: 101750600
Gene Symbol: SMG6
Alias: C17orf31|EST1A|KIAA0732|SMG-6
Full Name: TSR1%2C ribosome maturation factor
Gene Type: protein_coding
Species: Gallus_gallus
Status: putative
Strand: Minus strand
Length: 97700 bases
Position: chr19:5675613-5773312
Accession: 100857289
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGALP00000004899	EST1	PF10374.9	4.8e-14	1	1
ENSGALP00000062903	EST1	PF10374.9	5.4e-14	1	1
ENSGALP00000005037	AARP2CN	PF08142.12	1.9e-22	1	1
ENSGALP00000051567	AARP2CN	PF08142.12	1.9e-22	1	1
ENSGALP00000062903	EST1_DNA_bind	PF10373.9	6.2e-60	1	1
ENSGALP00000004899	EST1_DNA_bind	PF10373.9	7.2e-60	1	1
ENSGALP00000004899	PIN_4	PF13638.6	4.8e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGALT00000005046	SMG6-203	2424	-	ENSGALP00000005037	807 (aa)	-	F1NNP8
ENSGALT00000004908	SMG6-201	4359	-	ENSGALP00000004899	1452 (aa)	-	E1C510
ENSGALT00000084999	SMG6-202	4987	-	ENSGALP00000062903	1328 (aa)	-	A0A1L1RVP4
ENSGALT00000058580	SMG6-204	3430	-	ENSGALP00000051567	809 (aa)	XP_015151536	A0A1D5PFK0

Gene Model

Click here to download ENSGALG00000003108's gene model file

Pathways

Pathway ID	Pathway Name	Source
gga03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSGALG00000003108's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGALG00000003108	SMG6	98	71.062	ENSG00000070366	SMG6	100	83.398	Homo_sapiens
ENSGALG00000003108	SMG6	85	52.880	ENSAPOG00000019448	smg6	78	53.997	Acanthochromis_polyacanthus
ENSGALG00000003108	SMG6	98	72.091	ENSAMEG00000007632	SMG6	100	72.042	Ailuropoda_melanoleuca
ENSGALG00000003108	SMG6	96	48.787	ENSACIG00000012997	smg6	91	51.697	Amphilophus_citrinellus
ENSGALG00000003108	SMG6	85	52.801	ENSAOCG00000002630	smg6	78	53.898	Amphiprion_ocellaris
ENSGALG00000003108	SMG6	85	52.994	ENSAPEG00000019101	smg6	78	53.933	Amphiprion_percula
ENSGALG00000003108	SMG6	81	55.091	ENSATEG00000006483	smg6	76	53.673	Anabas_testudineus
ENSGALG00000003108	SMG6	93	60.849	ENSACAG00000011783	SMG6	99	61.369	Anolis_carolinensis
ENSGALG00000003108	SMG6	98	72.033	ENSANAG00000035760	SMG6	100	71.964	Aotus_nancymaae
ENSGALG00000003108	SMG6	70	58.494	ENSACLG00000005288	smg6	83	52.620	Astatotilapia_calliptera
ENSGALG00000003108	SMG6	71	61.524	ENSAMXG00000017326	smg6	91	53.425	Astyanax_mexicanus
ENSGALG00000003108	SMG6	98	72.234	ENSBTAG00000000267	SMG6	100	72.072	Bos_taurus
ENSGALG00000003108	SMG6	98	71.855	ENSCJAG00000001820	SMG6	100	71.716	Callithrix_jacchus
ENSGALG00000003108	SMG6	98	72.268	ENSCAFG00000019260	SMG6	100	72.050	Canis_familiaris
ENSGALG00000003108	SMG6	98	72.268	ENSCAFG00020009770	SMG6	100	72.050	Canis_lupus_dingo
ENSGALG00000003108	SMG6	98	71.716	ENSCHIG00000021998	SMG6	100	71.488	Capra_hircus
ENSGALG00000003108	SMG6	98	70.796	ENSTSYG00000003406	SMG6	100	83.203	Carlito_syrichta
ENSGALG00000003108	SMG6	87	74.209	ENSCAPG00000016197	SMG6	98	74.209	Cavia_aperea
ENSGALG00000003108	SMG6	98	70.885	ENSCPOG00000014878	SMG6	98	80.087	Cavia_porcellus
ENSGALG00000003108	SMG6	98	72.342	ENSCCAG00000035801	SMG6	100	72.272	Cebus_capucinus
ENSGALG00000003108	SMG6	98	71.617	ENSCATG00000031956	SMG6	100	71.548	Cercocebus_atys
ENSGALG00000003108	SMG6	98	71.903	ENSCLAG00000006748	SMG6	98	80.085	Chinchilla_lanigera
ENSGALG00000003108	SMG6	98	71.964	ENSCSAG00000013800	SMG6	100	71.895	Chlorocebus_sabaeus
ENSGALG00000003108	SMG6	51	88.060	ENSCHOG00000005024	-	62	88.060	Choloepus_hoffmanni
ENSGALG00000003108	SMG6	98	81.869	ENSCPBG00000020369	SMG6	100	81.735	Chrysemys_picta_bellii
ENSGALG00000003108	SMG6	96	71.824	ENSCANG00000031764	SMG6	100	83.203	Colobus_angolensis_palliatus
ENSGALG00000003108	SMG6	59	61.452	ENSCGRG00001019595	Smg6	98	61.202	Cricetulus_griseus_chok1gshd
ENSGALG00000003108	SMG6	96	66.097	ENSCGRG00000007782	Smg6	100	66.168	Cricetulus_griseus_crigri
ENSGALG00000003108	SMG6	97	52.252	ENSCSEG00000012757	smg6	81	52.888	Cynoglossus_semilaevis
ENSGALG00000003108	SMG6	85	51.727	ENSCVAG00000012789	smg6	77	52.857	Cyprinodon_variegatus
ENSGALG00000003108	SMG6	97	54.961	ENSDARG00000100481	smg6	77	55.329	Danio_rerio
ENSGALG00000003108	SMG6	98	71.608	ENSDNOG00000048283	SMG6	100	71.538	Dasypus_novemcinctus
ENSGALG00000003108	SMG6	98	68.141	ENSDORG00000016614	Smg6	100	84.891	Dipodomys_ordii
ENSGALG00000003108	SMG6	91	90.476	ENSETEG00000016790	SMG6	93	90.476	Echinops_telfairi
ENSGALG00000003108	SMG6	66	50.292	ENSEBUG00000005059	smg6	68	49.398	Eptatretus_burgeri
ENSGALG00000003108	SMG6	98	72.311	ENSEASG00005009318	SMG6	99	72.003	Equus_asinus_asinus
ENSGALG00000003108	SMG6	98	72.172	ENSECAG00000006519	SMG6	99	71.864	Equus_caballus
ENSGALG00000003108	SMG6	98	62.258	ENSEEUG00000003493	SMG6	100	61.765	Erinaceus_europaeus
ENSGALG00000003108	SMG6	70	60.240	ENSELUG00000005934	smg6	69	55.718	Esox_lucius
ENSGALG00000003108	SMG6	98	72.337	ENSFCAG00000028817	SMG6	100	72.218	Felis_catus
ENSGALG00000003108	SMG6	96	89.462	ENSFALG00000006538	SMG6	100	89.383	Ficedula_albicollis
ENSGALG00000003108	SMG6	98	71.834	ENSFDAG00000015106	SMG6	100	76.735	Fukomys_damarensis
ENSGALG00000003108	SMG6	85	52.042	ENSFHEG00000013282	smg6	78	52.834	Fundulus_heteroclitus
ENSGALG00000003108	SMG6	60	66.981	ENSGMOG00000019077	smg6	68	66.981	Gadus_morhua
ENSGALG00000003108	SMG6	84	53.216	ENSGAFG00000000379	smg6	77	53.139	Gambusia_affinis
ENSGALG00000003108	SMG6	88	53.669	ENSGACG00000020521	smg6	100	53.738	Gasterosteus_aculeatus
ENSGALG00000003108	SMG6	96	82.013	ENSGAGG00000025617	SMG6	100	81.877	Gopherus_agassizii
ENSGALG00000003108	SMG6	98	71.548	ENSGGOG00000017156	SMG6	100	71.478	Gorilla_gorilla
ENSGALG00000003108	SMG6	85	51.916	ENSHBUG00000021311	smg6	74	55.020	Haplochromis_burtoni
ENSGALG00000003108	SMG6	98	71.044	ENSHGLG00000012882	SMG6	94	82.511	Heterocephalus_glaber_female
ENSGALG00000003108	SMG6	98	71.113	ENSHGLG00100017815	SMG6	94	82.511	Heterocephalus_glaber_male
ENSGALG00000003108	SMG6	70	58.206	ENSHCOG00000008761	smg6	83	58.341	Hippocampus_comes
ENSGALG00000003108	SMG6	82	55.351	ENSIPUG00000012493	smg6	76	55.795	Ictalurus_punctatus
ENSGALG00000003108	SMG6	98	72.161	ENSSTOG00000028127	SMG6	94	83.857	Ictidomys_tridecemlineatus
ENSGALG00000003108	SMG6	85	67.017	ENSJJAG00000015367	Smg6	95	65.336	Jaculus_jaculus
ENSGALG00000003108	SMG6	96	47.987	ENSKMAG00000000279	smg6	91	48.243	Kryptolebias_marmoratus
ENSGALG00000003108	SMG6	81	54.075	ENSLBEG00000002184	smg6	74	54.134	Labrus_bergylta
ENSGALG00000003108	SMG6	60	56.318	ENSLACG00000000806	-	98	56.659	Latimeria_chalumnae
ENSGALG00000003108	SMG6	98	71.181	ENSLAFG00000001261	SMG6	100	71.111	Loxodonta_africana
ENSGALG00000003108	SMG6	98	72.053	ENSMFAG00000003394	SMG6	100	71.914	Macaca_fascicularis
ENSGALG00000003108	SMG6	98	71.825	ENSMMUG00000023161	SMG6	100	71.756	Macaca_mulatta
ENSGALG00000003108	SMG6	98	68.487	ENSMNEG00000044592	SMG6	100	68.417	Macaca_nemestrina
ENSGALG00000003108	SMG6	91	83.677	ENSMLEG00000029353	SMG6	100	83.865	Mandrillus_leucophaeus
ENSGALG00000003108	SMG6	86	52.950	ENSMAMG00000020119	smg6	80	54.831	Mastacembelus_armatus
ENSGALG00000003108	SMG6	70	58.471	ENSMZEG00005024736	smg6	77	53.172	Maylandia_zebra
ENSGALG00000003108	SMG6	77	95.712	ENSMGAG00000005401	-	97	95.712	Meleagris_gallopavo
ENSGALG00000003108	SMG6	98	72.307	ENSMICG00000012913	SMG6	100	72.069	Microcebus_murinus
ENSGALG00000003108	SMG6	98	47.062	ENSMMOG00000010883	smg6	100	47.352	Mola_mola
ENSGALG00000003108	SMG6	98	72.253	ENSMODG00000010622	SMG6	100	71.724	Monodelphis_domestica
ENSGALG00000003108	SMG6	81	53.912	ENSMALG00000001106	smg6	73	55.344	Monopterus_albus
ENSGALG00000003108	SMG6	98	71.468	MGP_CAROLIEiJ_G0016729	Smg6	98	80.980	Mus_caroli
ENSGALG00000003108	SMG6	98	71.478	ENSMUSG00000038290	Smg6	97	80.692	Mus_musculus
ENSGALG00000003108	SMG6	98	71.201	MGP_PahariEiJ_G0017866	Smg6	98	79.827	Mus_pahari
ENSGALG00000003108	SMG6	98	71.548	MGP_SPRETEiJ_G0017572	Smg6	98	80.692	Mus_spretus
ENSGALG00000003108	SMG6	98	72.507	ENSMPUG00000013046	SMG6	100	72.388	Mustela_putorius_furo
ENSGALG00000003108	SMG6	98	71.875	ENSMLUG00000005739	SMG6	100	71.875	Myotis_lucifugus
ENSGALG00000003108	SMG6	96	70.901	ENSNGAG00000007287	Smg6	94	82.063	Nannospalax_galili
ENSGALG00000003108	SMG6	85	52.429	ENSNBRG00000009511	smg6	84	52.489	Neolamprologus_brichardi
ENSGALG00000003108	SMG6	96	71.459	ENSNLEG00000017171	SMG6	100	83.398	Nomascus_leucogenys
ENSGALG00000003108	SMG6	96	70.584	ENSMEUG00000015804	SMG6	100	70.584	Notamacropus_eugenii
ENSGALG00000003108	SMG6	56	82.828	ENSOPRG00000000579	SMG6	91	76.364	Ochotona_princeps
ENSGALG00000003108	SMG6	94	83.515	ENSODEG00000008038	SMG6	100	83.515	Octodon_degus
ENSGALG00000003108	SMG6	98	50.628	ENSONIG00000005594	smg6	100	51.832	Oreochromis_niloticus
ENSGALG00000003108	SMG6	98	71.389	ENSOCUG00000013018	SMG6	100	71.320	Oryctolagus_cuniculus
ENSGALG00000003108	SMG6	97	53.167	ENSORLG00000003317	smg6	88	53.590	Oryzias_latipes
ENSGALG00000003108	SMG6	97	53.369	ENSORLG00020015343	smg6	88	53.333	Oryzias_latipes_hni
ENSGALG00000003108	SMG6	97	53.612	ENSORLG00015020454	smg6	88	53.612	Oryzias_latipes_hsok
ENSGALG00000003108	SMG6	97	52.564	ENSOMEG00000010838	smg6	78	52.795	Oryzias_melastigma
ENSGALG00000003108	SMG6	98	71.903	ENSOGAG00000004483	SMG6	100	71.685	Otolemur_garnettii
ENSGALG00000003108	SMG6	98	71.091	ENSOARG00000015076	SMG6	100	72.108	Ovis_aries
ENSGALG00000003108	SMG6	98	71.548	ENSPPAG00000043296	SMG6	100	71.478	Pan_paniscus
ENSGALG00000003108	SMG6	98	72.407	ENSPPRG00000014581	SMG6	100	72.287	Panthera_pardus
ENSGALG00000003108	SMG6	96	72.695	ENSPTIG00000008925	SMG6	100	84.180	Panthera_tigris_altaica
ENSGALG00000003108	SMG6	98	71.478	ENSPTRG00000008544	SMG6	100	83.398	Pan_troglodytes
ENSGALG00000003108	SMG6	98	71.756	ENSPANG00000024588	SMG6	100	71.686	Papio_anubis
ENSGALG00000003108	SMG6	91	79.016	ENSPSIG00000006660	SMG6	96	79.700	Pelodiscus_sinensis
ENSGALG00000003108	SMG6	98	48.141	ENSPMGG00000000844	smg6	100	61.119	Periophthalmus_magnuspinnatus
ENSGALG00000003108	SMG6	98	71.677	ENSPEMG00000020707	Smg6	98	80.349	Peromyscus_maniculatus_bairdii
ENSGALG00000003108	SMG6	98	50.599	ENSPFOG00000012035	smg6	100	50.698	Poecilia_formosa
ENSGALG00000003108	SMG6	84	52.856	ENSPLAG00000017660	smg6	77	52.731	Poecilia_latipinna
ENSGALG00000003108	SMG6	84	53.044	ENSPMEG00000000258	smg6	77	52.847	Poecilia_mexicana
ENSGALG00000003108	SMG6	84	53.139	ENSPREG00000010066	smg6	77	52.910	Poecilia_reticulata
ENSGALG00000003108	SMG6	98	66.644	ENSPPYG00000007790	SMG6	100	66.874	Pongo_abelii
ENSGALG00000003108	SMG6	98	68.659	ENSPCAG00000000552	SMG6	100	68.589	Procavia_capensis
ENSGALG00000003108	SMG6	98	72.122	ENSPCOG00000020925	SMG6	100	71.903	Propithecus_coquereli
ENSGALG00000003108	SMG6	81	74.202	ENSPVAG00000002159	SMG6	84	74.286	Pteropus_vampyrus
ENSGALG00000003108	SMG6	98	46.591	ENSPNYG00000024151	smg6	100	47.565	Pundamilia_nyererei
ENSGALG00000003108	SMG6	92	61.429	ENSPNAG00000015480	smg6	78	61.429	Pygocentrus_nattereri
ENSGALG00000003108	SMG6	98	71.339	ENSRNOG00000003041	Smg6	97	80.980	Rattus_norvegicus
ENSGALG00000003108	SMG6	98	71.617	ENSRBIG00000024746	SMG6	100	71.548	Rhinopithecus_bieti
ENSGALG00000003108	SMG6	98	71.686	ENSRROG00000030423	SMG6	100	83.008	Rhinopithecus_roxellana
ENSGALG00000003108	SMG6	98	71.914	ENSSBOG00000022518	SMG6	100	70.437	Saimiri_boliviensis_boliviensis
ENSGALG00000003108	SMG6	96	72.321	ENSSHAG00000010045	SMG6	98	72.230	Sarcophilus_harrisii
ENSGALG00000003108	SMG6	81	56.285	ENSSFOG00015005436	smg6	70	57.643	Scleropages_formosus
ENSGALG00000003108	SMG6	81	54.170	ENSSMAG00000019777	smg6	73	53.972	Scophthalmus_maximus
ENSGALG00000003108	SMG6	96	54.475	ENSSDUG00000016412	smg6	88	54.917	Seriola_dumerili
ENSGALG00000003108	SMG6	83	51.207	ENSSLDG00000020747	smg6	77	53.803	Seriola_lalandi_dorsalis
ENSGALG00000003108	SMG6	98	76.117	ENSSPUG00000007152	SMG6	99	76.187	Sphenodon_punctatus
ENSGALG00000003108	SMG6	85	53.289	ENSSPAG00000015633	smg6	78	54.014	Stegastes_partitus
ENSGALG00000003108	SMG6	98	72.045	ENSSSCG00000017826	SMG6	100	71.975	Sus_scrofa
ENSGALG00000003108	SMG6	98	86.732	ENSTGUG00000005836	SMG6	100	86.662	Taeniopygia_guttata
ENSGALG00000003108	SMG6	81	55.752	ENSTRUG00000000358	smg6	81	55.949	Takifugu_rubripes
ENSGALG00000003108	SMG6	98	49.373	ENSTNIG00000016164	smg6	100	49.769	Tetraodon_nigroviridis
ENSGALG00000003108	SMG6	98	68.611	ENSTBEG00000011424	SMG6	100	68.261	Tupaia_belangeri
ENSGALG00000003108	SMG6	89	79.274	ENSTTRG00000001175	SMG6	91	79.425	Tursiops_truncatus
ENSGALG00000003108	SMG6	98	72.199	ENSUAMG00000025152	SMG6	100	72.431	Ursus_americanus
ENSGALG00000003108	SMG6	96	72.514	ENSUMAG00000009306	SMG6	100	72.534	Ursus_maritimus
ENSGALG00000003108	SMG6	83	92.593	ENSVPAG00000000225	SMG6	88	92.593	Vicugna_pacos
ENSGALG00000003108	SMG6	98	72.280	ENSVVUG00000021727	SMG6	100	72.211	Vulpes_vulpes
ENSGALG00000003108	SMG6	96	58.473	ENSXETG00000023799	SMG6	100	57.979	Xenopus_tropicalis
ENSGALG00000003108	SMG6	84	53.385	ENSXCOG00000009867	smg6	77	53.463	Xiphophorus_couchianus
ENSGALG00000003108	SMG6	98	53.282	ENSXMAG00000010321	smg6	90	53.282	Xiphophorus_maculatus