EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSGALG00000003220 (Gene tree)
Gene ID: 420119
Gene Symbol: UPF1
Alias: HUPF1|KIAA0221|NORF1|RENT1|pNORF1|smg-2
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Gallus_gallus
Status: putative
Strand: Minus strand
Length: 16855 bases
Position: chr28:3849564-3866418
Accession: 420119
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGALP00000005090	UPF1_Zn_bind	PF09416.10	6.7e-75	1	1
ENSGALP00000005090	ResIII	PF04851.15	2.4e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGALT00000005099	UPF1-201	3476	-	ENSGALP00000005090	1117 (aa)	XP_015155615	E1C0J4

Gene Model

Click here to download ENSGALG00000003220's gene model file

Pathways

Pathway ID	Pathway Name	Source
gga03013	RNA transport	KEGG
gga03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSGALG00000003220's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGALG00000003220	UPF1	100	97.676	ENSG00000005007	UPF1	100	97.676	Homo_sapiens
ENSGALG00000003220	UPF1	100	92.583	ENSAPOG00000010916	-	100	92.672	Acanthochromis_polyacanthus
ENSGALG00000003220	UPF1	100	91.355	ENSAPOG00000023773	upf1	100	91.622	Acanthochromis_polyacanthus
ENSGALG00000003220	UPF1	100	96.463	ENSAMEG00000011474	UPF1	100	96.463	Ailuropoda_melanoleuca
ENSGALG00000003220	UPF1	92	95.024	ENSACIG00000010985	-	100	95.122	Amphilophus_citrinellus
ENSGALG00000003220	UPF1	100	91.585	ENSACIG00000019949	upf1	100	91.711	Amphilophus_citrinellus
ENSGALG00000003220	UPF1	100	92.583	ENSAOCG00000006352	-	100	92.672	Amphiprion_ocellaris
ENSGALG00000003220	UPF1	100	90.868	ENSAOCG00000018519	upf1	100	91.615	Amphiprion_ocellaris
ENSGALG00000003220	UPF1	100	92.583	ENSAPEG00000006292	-	100	92.672	Amphiprion_percula
ENSGALG00000003220	UPF1	100	90.868	ENSAPEG00000016344	upf1	100	91.615	Amphiprion_percula
ENSGALG00000003220	UPF1	100	92.761	ENSATEG00000016606	-	100	92.851	Anabas_testudineus
ENSGALG00000003220	UPF1	100	90.220	ENSATEG00000017867	upf1	100	91.189	Anabas_testudineus
ENSGALG00000003220	UPF1	93	98.956	ENSAPLG00000009175	UPF1	100	98.956	Anas_platyrhynchos
ENSGALG00000003220	UPF1	93	96.575	ENSANAG00000024107	UPF1	95	96.575	Aotus_nancymaae
ENSGALG00000003220	UPF1	100	91.316	ENSACLG00000007181	upf1	100	91.444	Astatotilapia_calliptera
ENSGALG00000003220	UPF1	100	92.315	ENSACLG00000022630	-	100	92.315	Astatotilapia_calliptera
ENSGALG00000003220	UPF1	100	93.214	ENSAMXG00000042187	upf1	100	93.839	Astyanax_mexicanus
ENSGALG00000003220	UPF1	100	96.814	ENSBTAG00000020922	UPF1	100	96.814	Bos_taurus
ENSGALG00000003220	UPF1	89	50.737	WBGene00004880	smg-2	95	48.772	Caenorhabditis_elegans
ENSGALG00000003220	UPF1	100	96.726	ENSCJAG00000019627	UPF1	100	96.726	Callithrix_jacchus
ENSGALG00000003220	UPF1	100	96.903	ENSCAFG00000014578	UPF1	100	96.903	Canis_familiaris
ENSGALG00000003220	UPF1	100	97.855	ENSCAFG00020012347	UPF1	100	97.855	Canis_lupus_dingo
ENSGALG00000003220	UPF1	100	97.766	ENSCHIG00000011018	UPF1	100	97.766	Capra_hircus
ENSGALG00000003220	UPF1	95	96.100	ENSTSYG00000008877	UPF1	99	96.100	Carlito_syrichta
ENSGALG00000003220	UPF1	93	97.526	ENSCAPG00000005758	UPF1	95	97.526	Cavia_aperea
ENSGALG00000003220	UPF1	100	95.394	ENSCPOG00000025463	UPF1	100	95.394	Cavia_porcellus
ENSGALG00000003220	UPF1	100	97.676	ENSCCAG00000032175	UPF1	100	97.676	Cebus_capucinus
ENSGALG00000003220	UPF1	93	97.812	ENSCATG00000040306	UPF1	98	97.812	Cercocebus_atys
ENSGALG00000003220	UPF1	97	95.268	ENSCLAG00000004037	UPF1	99	97.907	Chinchilla_lanigera
ENSGALG00000003220	UPF1	100	97.587	ENSCSAG00000005276	UPF1	100	97.587	Chlorocebus_sabaeus
ENSGALG00000003220	UPF1	100	98.393	ENSCPBG00000012513	UPF1	100	98.393	Chrysemys_picta_bellii
ENSGALG00000003220	UPF1	78	78.096	ENSCING00000021399	-	99	78.326	Ciona_intestinalis
ENSGALG00000003220	UPF1	99	71.770	ENSCSAVG00000006533	-	99	72.035	Ciona_savignyi
ENSGALG00000003220	UPF1	95	96.558	ENSCANG00000029819	UPF1	99	96.558	Colobus_angolensis_palliatus
ENSGALG00000003220	UPF1	100	97.138	ENSCGRG00001021067	Upf1	100	97.138	Cricetulus_griseus_chok1gshd
ENSGALG00000003220	UPF1	95	96.442	ENSCGRG00000013480	Upf1	99	96.442	Cricetulus_griseus_crigri
ENSGALG00000003220	UPF1	100	92.576	ENSCSEG00000016159	-	100	92.665	Cynoglossus_semilaevis
ENSGALG00000003220	UPF1	100	86.506	ENSCSEG00000017239	upf1	100	86.595	Cynoglossus_semilaevis
ENSGALG00000003220	UPF1	100	92.225	ENSCVAG00000010561	upf1	100	92.315	Cyprinodon_variegatus
ENSGALG00000003220	UPF1	100	93.125	ENSDARG00000016302	upf1	100	93.750	Danio_rerio
ENSGALG00000003220	UPF1	95	93.315	ENSDORG00000009984	Upf1	95	94.867	Dipodomys_ordii
ENSGALG00000003220	UPF1	85	71.132	FBgn0030354	Upf1	84	67.895	Drosophila_melanogaster
ENSGALG00000003220	UPF1	55	85.877	ENSEBUG00000010069	upf1	96	85.714	Eptatretus_burgeri
ENSGALG00000003220	UPF1	100	97.587	ENSEASG00005006549	UPF1	100	97.587	Equus_asinus_asinus
ENSGALG00000003220	UPF1	100	97.587	ENSECAG00000010639	UPF1	100	97.587	Equus_caballus
ENSGALG00000003220	UPF1	100	91.918	ENSELUG00000012916	-	100	91.925	Esox_lucius
ENSGALG00000003220	UPF1	100	90.489	ENSELUG00000020917	upf1	100	90.844	Esox_lucius
ENSGALG00000003220	UPF1	100	96.991	ENSFCAG00000009757	UPF1	100	96.991	Felis_catus
ENSGALG00000003220	UPF1	96	97.400	ENSFALG00000009312	UPF1	99	97.400	Ficedula_albicollis
ENSGALG00000003220	UPF1	97	95.151	ENSFDAG00000014816	UPF1	99	97.812	Fukomys_damarensis
ENSGALG00000003220	UPF1	85	95.012	ENSFHEG00000016276	-	96	95.012	Fundulus_heteroclitus
ENSGALG00000003220	UPF1	100	89.086	ENSFHEG00000006428	upf1	100	89.175	Fundulus_heteroclitus
ENSGALG00000003220	UPF1	100	91.416	ENSGMOG00000007541	upf1	100	91.681	Gadus_morhua
ENSGALG00000003220	UPF1	62	95.533	ENSGAFG00000015443	-	85	95.533	Gambusia_affinis
ENSGALG00000003220	UPF1	100	92.039	ENSGAFG00000004831	upf1	100	92.129	Gambusia_affinis
ENSGALG00000003220	UPF1	100	98.568	ENSGAGG00000022217	UPF1	100	98.568	Gopherus_agassizii
ENSGALG00000003220	UPF1	93	98.942	ENSGGOG00000002608	UPF1	99	98.942	Gorilla_gorilla
ENSGALG00000003220	UPF1	87	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSGALG00000003220	UPF1	90	87.356	ENSHBUG00000014694	upf1	100	87.356	Haplochromis_burtoni
ENSGALG00000003220	UPF1	100	96.460	ENSHGLG00000010900	UPF1	100	96.460	Heterocephalus_glaber_female
ENSGALG00000003220	UPF1	94	95.292	ENSHGLG00100005904	UPF1	97	95.292	Heterocephalus_glaber_male
ENSGALG00000003220	UPF1	100	91.592	ENSHCOG00000008918	upf1	100	94.004	Hippocampus_comes
ENSGALG00000003220	UPF1	100	93.393	ENSIPUG00000005108	UPF1	100	93.929	Ictalurus_punctatus
ENSGALG00000003220	UPF1	100	97.676	ENSSTOG00000009196	UPF1	100	97.676	Ictidomys_tridecemlineatus
ENSGALG00000003220	UPF1	100	95.748	ENSJJAG00000023151	Upf1	100	95.748	Jaculus_jaculus
ENSGALG00000003220	UPF1	100	92.583	ENSKMAG00000004962	upf1	100	92.583	Kryptolebias_marmoratus
ENSGALG00000003220	UPF1	100	89.673	ENSLBEG00000014862	upf1	100	90.997	Labrus_bergylta
ENSGALG00000003220	UPF1	100	92.589	ENSLBEG00000027848	-	100	92.411	Labrus_bergylta
ENSGALG00000003220	UPF1	62	97.848	ENSLACG00000008482	UPF1	100	97.848	Latimeria_chalumnae
ENSGALG00000003220	UPF1	100	95.707	ENSLOCG00000002072	upf1	100	95.707	Lepisosteus_oculatus
ENSGALG00000003220	UPF1	100	96.280	ENSLAFG00000014963	UPF1	100	96.280	Loxodonta_africana
ENSGALG00000003220	UPF1	100	96.726	ENSMFAG00000037748	UPF1	100	96.726	Macaca_fascicularis
ENSGALG00000003220	UPF1	100	96.726	ENSMMUG00000023286	UPF1	100	96.726	Macaca_mulatta
ENSGALG00000003220	UPF1	100	96.726	ENSMNEG00000000046	UPF1	100	96.726	Macaca_nemestrina
ENSGALG00000003220	UPF1	93	97.907	ENSMLEG00000028404	UPF1	99	97.907	Mandrillus_leucophaeus
ENSGALG00000003220	UPF1	100	91.607	ENSMAMG00000006231	-	100	92.232	Mastacembelus_armatus
ENSGALG00000003220	UPF1	100	89.868	ENSMAMG00000006229	upf1	100	91.013	Mastacembelus_armatus
ENSGALG00000003220	UPF1	100	89.877	ENSMZEG00005003489	upf1	100	91.239	Maylandia_zebra
ENSGALG00000003220	UPF1	100	92.315	ENSMZEG00005016386	-	100	92.315	Maylandia_zebra
ENSGALG00000003220	UPF1	93	98.479	ENSMGAG00000004745	UPF1	100	98.479	Meleagris_gallopavo
ENSGALG00000003220	UPF1	97	94.766	ENSMAUG00000011398	Upf1	98	94.766	Mesocricetus_auratus
ENSGALG00000003220	UPF1	100	97.587	ENSMICG00000001659	UPF1	100	97.587	Microcebus_murinus
ENSGALG00000003220	UPF1	100	96.103	ENSMOCG00000005699	Upf1	100	96.103	Microtus_ochrogaster
ENSGALG00000003220	UPF1	100	90.600	ENSMMOG00000007881	upf1	100	91.145	Mola_mola
ENSGALG00000003220	UPF1	93	92.632	ENSMMOG00000007537	-	99	92.727	Mola_mola
ENSGALG00000003220	UPF1	100	96.999	ENSMODG00000003689	UPF1	100	96.999	Monodelphis_domestica
ENSGALG00000003220	UPF1	100	90.958	ENSMALG00000000144	upf1	100	91.406	Monopterus_albus
ENSGALG00000003220	UPF1	100	91.362	ENSMALG00000018100	-	100	91.273	Monopterus_albus
ENSGALG00000003220	UPF1	100	97.048	MGP_CAROLIEiJ_G0031142	Upf1	100	97.048	Mus_caroli
ENSGALG00000003220	UPF1	100	97.048	ENSMUSG00000058301	Upf1	100	97.048	Mus_musculus
ENSGALG00000003220	UPF1	100	97.048	MGP_PahariEiJ_G0021607	Upf1	100	97.048	Mus_pahari
ENSGALG00000003220	UPF1	100	97.048	MGP_SPRETEiJ_G0032260	Upf1	100	97.048	Mus_spretus
ENSGALG00000003220	UPF1	100	97.855	ENSMPUG00000015516	UPF1	100	97.855	Mustela_putorius_furo
ENSGALG00000003220	UPF1	99	97.404	ENSMLUG00000012122	UPF1	99	97.404	Myotis_lucifugus
ENSGALG00000003220	UPF1	100	96.103	ENSNGAG00000024107	Upf1	100	96.103	Nannospalax_galili
ENSGALG00000003220	UPF1	100	88.966	ENSNBRG00000022069	-	100	93.975	Neolamprologus_brichardi
ENSGALG00000003220	UPF1	100	89.615	ENSNBRG00000000670	upf1	100	89.750	Neolamprologus_brichardi
ENSGALG00000003220	UPF1	93	92.103	ENSNLEG00000006062	UPF1	99	92.103	Nomascus_leucogenys
ENSGALG00000003220	UPF1	83	95.490	ENSMEUG00000014146	-	83	95.490	Notamacropus_eugenii
ENSGALG00000003220	UPF1	93	91.058	ENSOPRG00000014018	UPF1	99	91.058	Ochotona_princeps
ENSGALG00000003220	UPF1	100	95.922	ENSODEG00000012426	UPF1	100	95.922	Octodon_degus
ENSGALG00000003220	UPF1	100	92.404	ENSONIG00000012729	-	100	92.404	Oreochromis_niloticus
ENSGALG00000003220	UPF1	100	90.141	ENSONIG00000010452	upf1	100	91.504	Oreochromis_niloticus
ENSGALG00000003220	UPF1	100	96.025	ENSOANG00000004568	UPF1	100	96.025	Ornithorhynchus_anatinus
ENSGALG00000003220	UPF1	100	92.672	ENSORLG00000008453	upf1	100	92.404	Oryzias_latipes
ENSGALG00000003220	UPF1	100	92.672	ENSORLG00020014758	upf1	100	92.493	Oryzias_latipes_hni
ENSGALG00000003220	UPF1	100	92.672	ENSORLG00015010165	upf1	100	92.493	Oryzias_latipes_hsok
ENSGALG00000003220	UPF1	100	92.404	ENSOMEG00000003665	upf1	100	92.404	Oryzias_melastigma
ENSGALG00000003220	UPF1	100	97.766	ENSOGAG00000012866	UPF1	100	97.766	Otolemur_garnettii
ENSGALG00000003220	UPF1	96	95.396	ENSOARG00000010739	UPF1	100	95.396	Ovis_aries
ENSGALG00000003220	UPF1	95	96.558	ENSPPAG00000043884	UPF1	98	96.558	Pan_paniscus
ENSGALG00000003220	UPF1	100	96.991	ENSPPRG00000023470	UPF1	100	96.991	Panthera_pardus
ENSGALG00000003220	UPF1	93	97.025	ENSPTIG00000010159	UPF1	99	97.025	Panthera_tigris_altaica
ENSGALG00000003220	UPF1	100	96.726	ENSPTRG00000010721	UPF1	100	96.726	Pan_troglodytes
ENSGALG00000003220	UPF1	100	96.726	ENSPANG00000008847	UPF1	100	96.726	Papio_anubis
ENSGALG00000003220	UPF1	91	94.819	ENSPKIG00000006069	upf1	97	94.819	Paramormyrops_kingsleyae
ENSGALG00000003220	UPF1	68	98.954	ENSPSIG00000009491	UPF1	100	98.954	Pelodiscus_sinensis
ENSGALG00000003220	UPF1	100	89.216	ENSPMGG00000017327	upf1	100	89.413	Periophthalmus_magnuspinnatus
ENSGALG00000003220	UPF1	100	96.191	ENSPEMG00000001085	Upf1	100	96.191	Peromyscus_maniculatus_bairdii
ENSGALG00000003220	UPF1	100	87.255	ENSPMAG00000001206	upf1	100	86.898	Petromyzon_marinus
ENSGALG00000003220	UPF1	100	98.302	ENSPCIG00000006156	UPF1	100	98.302	Phascolarctos_cinereus
ENSGALG00000003220	UPF1	100	89.894	ENSPLAG00000018155	-	100	89.716	Poecilia_latipinna
ENSGALG00000003220	UPF1	100	92.129	ENSPLAG00000016232	-	100	92.218	Poecilia_latipinna
ENSGALG00000003220	UPF1	100	90.268	ENSPMEG00000011443	-	100	90.089	Poecilia_mexicana
ENSGALG00000003220	UPF1	100	92.046	ENSPMEG00000016319	-	100	92.136	Poecilia_mexicana
ENSGALG00000003220	UPF1	100	91.950	ENSPREG00000011247	-	100	92.039	Poecilia_reticulata
ENSGALG00000003220	UPF1	100	90.160	ENSPREG00000009940	upf1	100	90.071	Poecilia_reticulata
ENSGALG00000003220	UPF1	100	91.770	ENSPPYG00000009752	UPF1	100	91.770	Pongo_abelii
ENSGALG00000003220	UPF1	76	100.000	ENSPCAG00000012962	UPF1	76	100.000	Procavia_capensis
ENSGALG00000003220	UPF1	100	96.726	ENSPCOG00000023813	UPF1	100	96.726	Propithecus_coquereli
ENSGALG00000003220	UPF1	68	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSGALG00000003220	UPF1	100	89.877	ENSPNYG00000003694	upf1	100	91.239	Pundamilia_nyererei
ENSGALG00000003220	UPF1	100	92.404	ENSPNYG00000016731	-	100	92.404	Pundamilia_nyererei
ENSGALG00000003220	UPF1	100	93.214	ENSPNAG00000025614	upf1	100	93.839	Pygocentrus_nattereri
ENSGALG00000003220	UPF1	100	97.048	ENSRNOG00000020134	Upf1	100	97.048	Rattus_norvegicus
ENSGALG00000003220	UPF1	93	95.528	ENSRBIG00000013894	UPF1	98	98.905	Rhinopithecus_bieti
ENSGALG00000003220	UPF1	95	96.558	ENSRROG00000040935	UPF1	98	98.905	Rhinopithecus_roxellana
ENSGALG00000003220	UPF1	75	55.778	YMR080C	NAM7	87	55.778	Saccharomyces_cerevisiae
ENSGALG00000003220	UPF1	95	96.007	ENSSBOG00000023632	UPF1	99	96.007	Saimiri_boliviensis_boliviensis
ENSGALG00000003220	UPF1	93	98.386	ENSSHAG00000010499	UPF1	100	98.386	Sarcophilus_harrisii
ENSGALG00000003220	UPF1	100	95.532	ENSSFOG00015021095	upf1	99	97.699	Scleropages_formosus
ENSGALG00000003220	UPF1	100	92.411	ENSSMAG00000021018	-	100	92.500	Scophthalmus_maximus
ENSGALG00000003220	UPF1	100	89.056	ENSSMAG00000005055	upf1	100	90.123	Scophthalmus_maximus
ENSGALG00000003220	UPF1	100	92.768	ENSSDUG00000009629	-	100	92.857	Seriola_dumerili
ENSGALG00000003220	UPF1	100	90.132	ENSSDUG00000013320	upf1	100	91.278	Seriola_dumerili
ENSGALG00000003220	UPF1	100	90.933	ENSSLDG00000020868	upf1	100	91.571	Seriola_lalandi_dorsalis
ENSGALG00000003220	UPF1	100	92.768	ENSSLDG00000006878	-	100	92.857	Seriola_lalandi_dorsalis
ENSGALG00000003220	UPF1	100	98.568	ENSSPUG00000010538	UPF1	100	98.568	Sphenodon_punctatus
ENSGALG00000003220	UPF1	100	92.576	ENSSPAG00000011521	-	100	92.576	Stegastes_partitus
ENSGALG00000003220	UPF1	100	89.356	ENSSPAG00000000003	upf1	100	89.474	Stegastes_partitus
ENSGALG00000003220	UPF1	100	97.676	ENSSSCG00000039301	UPF1	99	98.944	Sus_scrofa
ENSGALG00000003220	UPF1	83	91.702	ENSTGUG00000001057	UPF1	100	97.041	Taeniopygia_guttata
ENSGALG00000003220	UPF1	100	91.771	ENSTRUG00000005131	-	100	91.592	Takifugu_rubripes
ENSGALG00000003220	UPF1	100	90.958	ENSTRUG00000000150	upf1	100	90.958	Takifugu_rubripes
ENSGALG00000003220	UPF1	100	93.644	ENSTTRG00000011544	UPF1	100	93.465	Tursiops_truncatus
ENSGALG00000003220	UPF1	100	97.855	ENSUAMG00000007093	UPF1	100	97.855	Ursus_americanus
ENSGALG00000003220	UPF1	95	97.923	ENSUMAG00000006652	UPF1	99	99.274	Ursus_maritimus
ENSGALG00000003220	UPF1	100	97.855	ENSVVUG00000007797	UPF1	100	97.855	Vulpes_vulpes
ENSGALG00000003220	UPF1	100	82.643	ENSXETG00000013602	upf1	100	82.555	Xenopus_tropicalis
ENSGALG00000003220	UPF1	92	94.762	ENSXCOG00000005764	-	100	94.762	Xiphophorus_couchianus
ENSGALG00000003220	UPF1	97	90.102	ENSXCOG00000015275	-	96	89.824	Xiphophorus_couchianus
ENSGALG00000003220	UPF1	100	90.340	ENSXMAG00000001703	-	100	90.072	Xiphophorus_maculatus
ENSGALG00000003220	UPF1	100	91.868	ENSXMAG00000002540	-	100	91.957	Xiphophorus_maculatus