EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSGALG00000003245 (Gene tree)
Gene ID: 426775
Gene Symbol: LSM1
Alias: CASM|YJL124C
Full Name: LSM1 homolog%2C mRNA degradation associated
Gene Type: protein_coding
Species: Gallus_gallus
Status: putative
Strand: Minus strand
Length: 1422 bases
Position: chr22:2583326-2584747
Accession: 426775
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGALP00000005122	LSM	PF01423.22	2.2e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGALT00000005131	LSM1-201	756	-	ENSGALP00000005122	133 (aa)	XP_424387	E1C962

Gene Model

Click here to download ENSGALG00000003245's gene model file

Pathways

Pathway ID	Pathway Name	Source
gga03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSGALG00000003245's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGALG00000003245	LSM1	100	93.233	ENSG00000175324	LSM1	100	93.233	Homo_sapiens
ENSGALG00000003245	LSM1	100	82.707	ENSAPOG00000010833	lsm1	100	82.707	Acanthochromis_polyacanthus
ENSGALG00000003245	LSM1	100	93.233	ENSAMEG00000011141	LSM1	100	93.233	Ailuropoda_melanoleuca
ENSGALG00000003245	LSM1	58	92.208	ENSACIG00000019593	lsm1	64	92.208	Amphilophus_citrinellus
ENSGALG00000003245	LSM1	100	82.707	ENSAOCG00000017096	lsm1	100	82.707	Amphiprion_ocellaris
ENSGALG00000003245	LSM1	100	82.707	ENSAOCG00000017997	-	100	82.707	Amphiprion_ocellaris
ENSGALG00000003245	LSM1	100	82.707	ENSAPEG00000011669	lsm1	100	82.707	Amphiprion_percula
ENSGALG00000003245	LSM1	100	82.707	ENSATEG00000022266	lsm1	100	82.707	Anabas_testudineus
ENSGALG00000003245	LSM1	100	93.233	ENSANAG00000027785	LSM1	100	93.233	Aotus_nancymaae
ENSGALG00000003245	LSM1	100	82.707	ENSACLG00000011400	lsm1	100	82.707	Astatotilapia_calliptera
ENSGALG00000003245	LSM1	100	86.466	ENSAMXG00000005441	lsm1	100	86.466	Astyanax_mexicanus
ENSGALG00000003245	LSM1	100	92.481	ENSBTAG00000001612	LSM1	100	92.481	Bos_taurus
ENSGALG00000003245	LSM1	87	52.542	WBGene00003076	lsm-1	90	52.542	Caenorhabditis_elegans
ENSGALG00000003245	LSM1	100	92.481	ENSCJAG00000048015	LSM1	100	92.481	Callithrix_jacchus
ENSGALG00000003245	LSM1	100	93.233	ENSCAFG00000006113	LSM1	100	93.233	Canis_familiaris
ENSGALG00000003245	LSM1	100	93.233	ENSCAFG00020001822	LSM1	100	93.233	Canis_lupus_dingo
ENSGALG00000003245	LSM1	100	93.233	ENSCHIG00000013194	LSM1	100	93.233	Capra_hircus
ENSGALG00000003245	LSM1	100	93.233	ENSTSYG00000010394	LSM1	100	93.233	Carlito_syrichta
ENSGALG00000003245	LSM1	100	93.233	ENSCPOG00000032671	LSM1	100	93.233	Cavia_porcellus
ENSGALG00000003245	LSM1	100	93.233	ENSCCAG00000037171	LSM1	100	93.233	Cebus_capucinus
ENSGALG00000003245	LSM1	100	93.233	ENSCATG00000020377	LSM1	100	93.233	Cercocebus_atys
ENSGALG00000003245	LSM1	100	91.729	ENSCLAG00000001137	LSM1	100	91.729	Chinchilla_lanigera
ENSGALG00000003245	LSM1	100	93.233	ENSCSAG00000015485	LSM1	100	93.233	Chlorocebus_sabaeus
ENSGALG00000003245	LSM1	100	93.985	ENSCHOG00000006030	LSM1	100	93.985	Choloepus_hoffmanni
ENSGALG00000003245	LSM1	95	88.976	ENSCPBG00000006569	LSM1	86	88.976	Chrysemys_picta_bellii
ENSGALG00000003245	LSM1	99	67.424	ENSCING00000013536	-	99	67.424	Ciona_intestinalis
ENSGALG00000003245	LSM1	100	93.233	ENSCANG00000019173	LSM1	100	93.233	Colobus_angolensis_palliatus
ENSGALG00000003245	LSM1	80	77.477	ENSCGRG00001002259	-	97	77.477	Cricetulus_griseus_chok1gshd
ENSGALG00000003245	LSM1	100	92.481	ENSCGRG00001024560	-	100	92.481	Cricetulus_griseus_chok1gshd
ENSGALG00000003245	LSM1	100	92.481	ENSCGRG00000006554	-	100	92.481	Cricetulus_griseus_crigri
ENSGALG00000003245	LSM1	80	77.477	ENSCGRG00000013603	-	97	77.477	Cricetulus_griseus_crigri
ENSGALG00000003245	LSM1	100	83.459	ENSCSEG00000010570	lsm1	92	83.459	Cynoglossus_semilaevis
ENSGALG00000003245	LSM1	100	82.707	ENSCSEG00000008319	lsm1	92	82.707	Cynoglossus_semilaevis
ENSGALG00000003245	LSM1	100	81.955	ENSCVAG00000003871	lsm1	100	81.955	Cyprinodon_variegatus
ENSGALG00000003245	LSM1	100	85.714	ENSDARG00000043177	lsm1	100	85.714	Danio_rerio
ENSGALG00000003245	LSM1	100	93.233	ENSDNOG00000046387	-	100	93.233	Dasypus_novemcinctus
ENSGALG00000003245	LSM1	100	92.481	ENSDNOG00000032911	-	100	92.481	Dasypus_novemcinctus
ENSGALG00000003245	LSM1	89	74.790	ENSDNOG00000046620	-	100	74.790	Dasypus_novemcinctus
ENSGALG00000003245	LSM1	100	87.218	ENSDNOG00000030989	-	100	87.218	Dasypus_novemcinctus
ENSGALG00000003245	LSM1	100	93.233	ENSDORG00000028172	Lsm1	100	93.233	Dipodomys_ordii
ENSGALG00000003245	LSM1	93	64.516	FBgn0261067	LSm1	91	64.516	Drosophila_melanogaster
ENSGALG00000003245	LSM1	100	92.481	ENSEASG00005016677	LSM1	100	92.481	Equus_asinus_asinus
ENSGALG00000003245	LSM1	100	92.481	ENSECAG00000010461	LSM1	100	92.481	Equus_caballus
ENSGALG00000003245	LSM1	100	67.669	ENSEEUG00000015181	LSM1	100	67.669	Erinaceus_europaeus
ENSGALG00000003245	LSM1	100	81.955	ENSELUG00000023374	lsm1	100	81.955	Esox_lucius
ENSGALG00000003245	LSM1	100	84.962	ENSELUG00000002322	lsm1	100	84.962	Esox_lucius
ENSGALG00000003245	LSM1	100	93.233	ENSFCAG00000039335	LSM1	100	93.233	Felis_catus
ENSGALG00000003245	LSM1	89	96.610	ENSFALG00000006723	LSM1	100	96.610	Ficedula_albicollis
ENSGALG00000003245	LSM1	100	93.233	ENSFDAG00000007658	LSM1	100	93.233	Fukomys_damarensis
ENSGALG00000003245	LSM1	100	81.955	ENSFHEG00000009556	lsm1	100	81.955	Fundulus_heteroclitus
ENSGALG00000003245	LSM1	100	81.955	ENSGMOG00000016651	lsm1	98	81.955	Gadus_morhua
ENSGALG00000003245	LSM1	100	81.955	ENSGAFG00000011355	lsm1	100	81.955	Gambusia_affinis
ENSGALG00000003245	LSM1	100	82.707	ENSGACG00000011763	lsm1	98	82.707	Gasterosteus_aculeatus
ENSGALG00000003245	LSM1	100	96.241	ENSGAGG00000024065	LSM1	100	96.241	Gopherus_agassizii
ENSGALG00000003245	LSM1	100	93.233	ENSGGOG00000022658	LSM1	100	93.233	Gorilla_gorilla
ENSGALG00000003245	LSM1	100	82.707	ENSHBUG00000010897	lsm1	100	82.707	Haplochromis_burtoni
ENSGALG00000003245	LSM1	100	75.188	ENSHGLG00000017574	-	100	75.188	Heterocephalus_glaber_female
ENSGALG00000003245	LSM1	100	93.233	ENSHGLG00000005711	LSM1	100	93.233	Heterocephalus_glaber_female
ENSGALG00000003245	LSM1	100	93.233	ENSHGLG00100017660	LSM1	100	93.233	Heterocephalus_glaber_male
ENSGALG00000003245	LSM1	100	75.188	ENSHGLG00100012152	-	100	75.188	Heterocephalus_glaber_male
ENSGALG00000003245	LSM1	100	81.203	ENSHCOG00000017233	lsm1	100	81.203	Hippocampus_comes
ENSGALG00000003245	LSM1	100	85.714	ENSIPUG00000002312	LSM1	100	85.714	Ictalurus_punctatus
ENSGALG00000003245	LSM1	58	98.701	ENSSTOG00000026870	LSM1	94	98.701	Ictidomys_tridecemlineatus
ENSGALG00000003245	LSM1	100	91.729	ENSJJAG00000014605	-	100	91.729	Jaculus_jaculus
ENSGALG00000003245	LSM1	100	82.707	ENSKMAG00000003016	lsm1	100	82.707	Kryptolebias_marmoratus
ENSGALG00000003245	LSM1	100	83.459	ENSLBEG00000022352	lsm1	100	83.459	Labrus_bergylta
ENSGALG00000003245	LSM1	89	88.983	ENSLACG00000010947	LSM1	98	88.983	Latimeria_chalumnae
ENSGALG00000003245	LSM1	100	91.729	ENSLOCG00000015149	lsm1	100	91.729	Lepisosteus_oculatus
ENSGALG00000003245	LSM1	100	93.233	ENSLAFG00000003534	LSM1	100	93.233	Loxodonta_africana
ENSGALG00000003245	LSM1	100	93.233	ENSMFAG00000032661	LSM1	100	93.233	Macaca_fascicularis
ENSGALG00000003245	LSM1	100	93.233	ENSMLEG00000034535	LSM1	100	93.233	Mandrillus_leucophaeus
ENSGALG00000003245	LSM1	100	82.707	ENSMAMG00000007464	lsm1	100	82.707	Mastacembelus_armatus
ENSGALG00000003245	LSM1	100	82.707	ENSMZEG00005010321	lsm1	100	82.707	Maylandia_zebra
ENSGALG00000003245	LSM1	100	99.248	ENSMGAG00000002125	LSM1	100	99.248	Meleagris_gallopavo
ENSGALG00000003245	LSM1	100	92.481	ENSMICG00000030726	LSM1	100	92.481	Microcebus_murinus
ENSGALG00000003245	LSM1	100	92.481	ENSMOCG00000022817	Lsm1	100	92.481	Microtus_ochrogaster
ENSGALG00000003245	LSM1	100	84.211	ENSMMOG00000015466	lsm1	100	84.211	Mola_mola
ENSGALG00000003245	LSM1	100	93.985	ENSMODG00000010732	-	100	93.985	Monodelphis_domestica
ENSGALG00000003245	LSM1	58	92.208	ENSMALG00000001478	lsm1	82	92.208	Monopterus_albus
ENSGALG00000003245	LSM1	100	90.977	MGP_CAROLIEiJ_G0030930	Lsm1	100	90.977	Mus_caroli
ENSGALG00000003245	LSM1	100	90.977	ENSMUSG00000037296	Lsm1	100	90.977	Mus_musculus
ENSGALG00000003245	LSM1	100	90.977	MGP_PahariEiJ_G0021400	Lsm1	100	90.977	Mus_pahari
ENSGALG00000003245	LSM1	100	90.977	MGP_SPRETEiJ_G0032049	Lsm1	100	90.977	Mus_spretus
ENSGALG00000003245	LSM1	100	93.985	ENSMPUG00000009883	LSM1	100	93.985	Mustela_putorius_furo
ENSGALG00000003245	LSM1	100	93.233	ENSMLUG00000003734	LSM1	100	93.233	Myotis_lucifugus
ENSGALG00000003245	LSM1	100	92.481	ENSNGAG00000003753	Lsm1	100	92.481	Nannospalax_galili
ENSGALG00000003245	LSM1	58	92.208	ENSNBRG00000017370	lsm1	66	92.208	Neolamprologus_brichardi
ENSGALG00000003245	LSM1	100	93.233	ENSNLEG00000029390	LSM1	100	93.233	Nomascus_leucogenys
ENSGALG00000003245	LSM1	100	93.985	ENSMEUG00000014077	LSM1	100	93.985	Notamacropus_eugenii
ENSGALG00000003245	LSM1	88	91.453	ENSOPRG00000000333	LSM1	100	91.453	Ochotona_princeps
ENSGALG00000003245	LSM1	100	93.233	ENSODEG00000004834	LSM1	100	93.233	Octodon_degus
ENSGALG00000003245	LSM1	100	82.707	ENSONIG00000010782	lsm1	100	82.707	Oreochromis_niloticus
ENSGALG00000003245	LSM1	100	93.233	ENSOANG00000003256	LSM1	100	93.233	Ornithorhynchus_anatinus
ENSGALG00000003245	LSM1	100	93.233	ENSOCUG00000015399	LSM1	100	93.233	Oryctolagus_cuniculus
ENSGALG00000003245	LSM1	100	84.211	ENSORLG00000030288	lsm1	100	84.211	Oryzias_latipes
ENSGALG00000003245	LSM1	100	82.707	ENSORLG00020006213	-	86	82.707	Oryzias_latipes_hni
ENSGALG00000003245	LSM1	100	84.211	ENSORLG00020003941	lsm1	100	84.211	Oryzias_latipes_hni
ENSGALG00000003245	LSM1	100	84.211	ENSORLG00015018350	lsm1	100	84.211	Oryzias_latipes_hsok
ENSGALG00000003245	LSM1	100	84.211	ENSOMEG00000012454	lsm1	100	84.211	Oryzias_melastigma
ENSGALG00000003245	LSM1	100	93.233	ENSOGAG00000015161	LSM1	100	93.233	Otolemur_garnettii
ENSGALG00000003245	LSM1	100	93.233	ENSOARG00000001317	LSM1	100	93.233	Ovis_aries
ENSGALG00000003245	LSM1	100	93.233	ENSPPAG00000032279	LSM1	100	93.233	Pan_paniscus
ENSGALG00000003245	LSM1	100	93.233	ENSPPRG00000014172	-	100	93.233	Panthera_pardus
ENSGALG00000003245	LSM1	100	93.233	ENSPTIG00000010289	LSM1	100	93.233	Panthera_tigris_altaica
ENSGALG00000003245	LSM1	100	93.233	ENSPTRG00000020169	LSM1	100	93.233	Pan_troglodytes
ENSGALG00000003245	LSM1	100	93.233	ENSPANG00000008814	LSM1	100	93.233	Papio_anubis
ENSGALG00000003245	LSM1	100	83.459	ENSPKIG00000019409	LSM1	99	83.459	Paramormyrops_kingsleyae
ENSGALG00000003245	LSM1	100	88.722	ENSPKIG00000001839	lsm1	100	88.722	Paramormyrops_kingsleyae
ENSGALG00000003245	LSM1	98	89.231	ENSPSIG00000012563	LSM1	99	89.231	Pelodiscus_sinensis
ENSGALG00000003245	LSM1	58	92.208	ENSPMGG00000022999	lsm1	73	92.208	Periophthalmus_magnuspinnatus
ENSGALG00000003245	LSM1	85	79.646	ENSPMAG00000002671	lsm1	100	79.646	Petromyzon_marinus
ENSGALG00000003245	LSM1	100	93.985	ENSPCIG00000008880	LSM1	100	93.985	Phascolarctos_cinereus
ENSGALG00000003245	LSM1	100	81.955	ENSPFOG00000016029	lsm1	100	81.955	Poecilia_formosa
ENSGALG00000003245	LSM1	100	81.955	ENSPLAG00000007879	lsm1	100	81.955	Poecilia_latipinna
ENSGALG00000003245	LSM1	100	81.955	ENSPMEG00000023550	lsm1	100	81.955	Poecilia_mexicana
ENSGALG00000003245	LSM1	100	81.955	ENSPREG00000009574	lsm1	100	81.955	Poecilia_reticulata
ENSGALG00000003245	LSM1	100	93.233	ENSPPYG00000018521	LSM1	100	93.233	Pongo_abelii
ENSGALG00000003245	LSM1	100	93.233	ENSPCOG00000020901	-	100	93.233	Propithecus_coquereli
ENSGALG00000003245	LSM1	100	93.233	ENSPVAG00000006016	LSM1	100	93.233	Pteropus_vampyrus
ENSGALG00000003245	LSM1	100	82.707	ENSPNYG00000018067	lsm1	100	82.707	Pundamilia_nyererei
ENSGALG00000003245	LSM1	100	85.714	ENSPNAG00000013707	lsm1	100	85.714	Pygocentrus_nattereri
ENSGALG00000003245	LSM1	100	91.729	ENSRNOG00000015375	Lsm1	100	91.729	Rattus_norvegicus
ENSGALG00000003245	LSM1	100	93.233	ENSRBIG00000027449	LSM1	100	93.233	Rhinopithecus_bieti
ENSGALG00000003245	LSM1	100	93.233	ENSRROG00000036074	LSM1	100	93.233	Rhinopithecus_roxellana
ENSGALG00000003245	LSM1	83	43.966	YJL124C	LSM1	67	43.966	Saccharomyces_cerevisiae
ENSGALG00000003245	LSM1	100	93.985	ENSSHAG00000017260	LSM1	100	93.985	Sarcophilus_harrisii
ENSGALG00000003245	LSM1	100	88.722	ENSSFOG00015019528	lsm1	100	88.722	Scleropages_formosus
ENSGALG00000003245	LSM1	100	82.707	ENSSMAG00000004930	lsm1	100	82.707	Scophthalmus_maximus
ENSGALG00000003245	LSM1	100	84.211	ENSSDUG00000021823	lsm1	100	84.211	Seriola_dumerili
ENSGALG00000003245	LSM1	100	84.211	ENSSLDG00000012154	lsm1	100	84.211	Seriola_lalandi_dorsalis
ENSGALG00000003245	LSM1	100	96.241	ENSSPUG00000014878	LSM1	100	96.241	Sphenodon_punctatus
ENSGALG00000003245	LSM1	100	81.955	ENSSPAG00000020548	lsm1	100	81.955	Stegastes_partitus
ENSGALG00000003245	LSM1	100	93.233	ENSSSCG00000039058	LSM1	100	93.233	Sus_scrofa
ENSGALG00000003245	LSM1	100	96.992	ENSTGUG00000004793	LSM1	100	96.992	Taeniopygia_guttata
ENSGALG00000003245	LSM1	100	84.962	ENSTRUG00000025239	lsm1	100	84.962	Takifugu_rubripes
ENSGALG00000003245	LSM1	100	85.714	ENSTNIG00000004055	lsm1	100	85.714	Tetraodon_nigroviridis
ENSGALG00000003245	LSM1	88	90.598	ENSTBEG00000015884	LSM1	100	90.598	Tupaia_belangeri
ENSGALG00000003245	LSM1	100	93.233	ENSTTRG00000004482	LSM1	100	93.233	Tursiops_truncatus
ENSGALG00000003245	LSM1	100	93.233	ENSUAMG00000004103	LSM1	100	93.233	Ursus_americanus
ENSGALG00000003245	LSM1	100	93.233	ENSUMAG00000009132	LSM1	100	93.233	Ursus_maritimus
ENSGALG00000003245	LSM1	58	97.403	ENSVPAG00000011593	LSM1	100	97.403	Vicugna_pacos
ENSGALG00000003245	LSM1	61	72.840	ENSVVUG00000014880	-	86	72.840	Vulpes_vulpes
ENSGALG00000003245	LSM1	100	93.233	ENSVVUG00000020191	LSM1	100	93.233	Vulpes_vulpes
ENSGALG00000003245	LSM1	100	89.051	ENSXETG00000009004	lsm1	100	89.051	Xenopus_tropicalis
ENSGALG00000003245	LSM1	100	82.707	ENSXCOG00000015631	lsm1	100	82.707	Xiphophorus_couchianus
ENSGALG00000003245	LSM1	100	82.707	ENSXMAG00000026637	lsm1	100	82.707	Xiphophorus_maculatus