EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSGALG00000003385 (Gene tree)
Gene ID: 420128
Gene Symbol: LSM4
Alias: -
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Gallus_gallus
Status: putative
Strand: Plus strand
Length: 6332 bases
Position: chr28:4068722-4075053
Accession: 420128
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGALP00000005338	LSM	PF01423.22	7.8e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGALT00000005348	LSM4-201	987	-	ENSGALP00000005338	138 (aa)	XP_418245	E1C4H6

Gene Model

Click here to download ENSGALG00000003385's gene model file

Pathways

Pathway ID	Pathway Name	Source
gga03018	RNA degradation	KEGG
gga03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSGALG00000003385's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGALG00000003385	LSM4	100	89.928	ENSG00000130520	LSM4	100	81.295	Homo_sapiens
ENSGALG00000003385	LSM4	72	97.980	ENSAPOG00000005643	lsm4	58	100.000	Acanthochromis_polyacanthus
ENSGALG00000003385	LSM4	99	89.855	ENSAMEG00000011162	LSM4	95	81.159	Ailuropoda_melanoleuca
ENSGALG00000003385	LSM4	72	97.980	ENSAOCG00000006414	lsm4	59	100.000	Amphiprion_ocellaris
ENSGALG00000003385	LSM4	72	97.980	ENSAPEG00000006238	lsm4	59	100.000	Amphiprion_percula
ENSGALG00000003385	LSM4	72	97.980	ENSATEG00000016559	lsm4	58	100.000	Anabas_testudineus
ENSGALG00000003385	LSM4	100	89.928	ENSANAG00000034659	LSM4	100	81.295	Aotus_nancymaae
ENSGALG00000003385	LSM4	96	83.571	ENSACLG00000022738	lsm4	60	100.000	Astatotilapia_calliptera
ENSGALG00000003385	LSM4	96	91.045	ENSAMXG00000016932	lsm4	94	91.045	Astyanax_mexicanus
ENSGALG00000003385	LSM4	100	89.928	ENSBTAG00000008578	LSM4	100	81.295	Bos_taurus
ENSGALG00000003385	LSM4	60	75.904	WBGene00003078	lsm-4	67	75.904	Caenorhabditis_elegans
ENSGALG00000003385	LSM4	100	89.928	ENSCJAG00000014171	LSM4	100	81.295	Callithrix_jacchus
ENSGALG00000003385	LSM4	64	98.864	ENSCAFG00000014900	LSM4	90	81.159	Canis_familiaris
ENSGALG00000003385	LSM4	100	89.928	ENSCAFG00020012137	LSM4	100	81.295	Canis_lupus_dingo
ENSGALG00000003385	LSM4	99	89.855	ENSCHIG00000010928	LSM4	91	81.159	Capra_hircus
ENSGALG00000003385	LSM4	100	89.209	ENSTSYG00000030906	LSM4	100	80.576	Carlito_syrichta
ENSGALG00000003385	LSM4	100	88.489	ENSCAPG00000014140	LSM4	100	80.576	Cavia_aperea
ENSGALG00000003385	LSM4	100	88.489	ENSCPOG00000024117	LSM4	100	80.576	Cavia_porcellus
ENSGALG00000003385	LSM4	100	89.928	ENSCCAG00000036308	LSM4	100	81.295	Cebus_capucinus
ENSGALG00000003385	LSM4	100	89.928	ENSCATG00000029311	LSM4	100	81.295	Cercocebus_atys
ENSGALG00000003385	LSM4	100	88.489	ENSCLAG00000010828	LSM4	100	79.137	Chinchilla_lanigera
ENSGALG00000003385	LSM4	100	89.928	ENSCSAG00000005370	LSM4	100	81.295	Chlorocebus_sabaeus
ENSGALG00000003385	LSM4	100	99.275	ENSCPBG00000012925	LSM4	100	99.275	Chrysemys_picta_bellii
ENSGALG00000003385	LSM4	62	93.023	ENSCING00000007519	-	69	93.182	Ciona_intestinalis
ENSGALG00000003385	LSM4	62	93.023	ENSCSAVG00000008596	-	70	93.182	Ciona_savignyi
ENSGALG00000003385	LSM4	100	89.928	ENSCANG00000043686	LSM4	100	81.295	Colobus_angolensis_palliatus
ENSGALG00000003385	LSM4	100	75.362	ENSCGRG00001014436	Lsm4	100	75.362	Cricetulus_griseus_chok1gshd
ENSGALG00000003385	LSM4	99	75.182	ENSCGRG00000009398	Lsm4	100	75.182	Cricetulus_griseus_crigri
ENSGALG00000003385	LSM4	70	96.907	ENSCSEG00000016127	lsm4	94	85.926	Cynoglossus_semilaevis
ENSGALG00000003385	LSM4	96	88.235	ENSCVAG00000010601	lsm4	62	98.864	Cyprinodon_variegatus
ENSGALG00000003385	LSM4	86	80.992	ENSCVAG00000021828	lsm4	56	98.630	Cyprinodon_variegatus
ENSGALG00000003385	LSM4	99	85.315	ENSDARG00000023852	lsm4	99	85.106	Danio_rerio
ENSGALG00000003385	LSM4	100	88.489	ENSDORG00000024225	Lsm4	100	79.856	Dipodomys_ordii
ENSGALG00000003385	LSM4	70	81.443	FBgn0032240	CG17768	57	87.500	Drosophila_melanogaster
ENSGALG00000003385	LSM4	89	76.613	ENSETEG00000007762	-	100	79.032	Echinops_telfairi
ENSGALG00000003385	LSM4	54	93.333	ENSEBUG00000003639	-	53	88.750	Eptatretus_burgeri
ENSGALG00000003385	LSM4	100	79.137	ENSECAG00000010141	LSM4	57	81.295	Equus_caballus
ENSGALG00000003385	LSM4	95	94.030	ENSELUG00000012821	lsm4	100	94.030	Esox_lucius
ENSGALG00000003385	LSM4	100	89.928	ENSFCAG00000040580	LSM4	100	81.295	Felis_catus
ENSGALG00000003385	LSM4	99	100.000	ENSFALG00000009478	LSM4	99	100.000	Ficedula_albicollis
ENSGALG00000003385	LSM4	99	88.406	ENSFDAG00000010124	LSM4	100	80.435	Fukomys_damarensis
ENSGALG00000003385	LSM4	70	98.958	ENSGMOG00000007729	lsm4	59	100.000	Gadus_morhua
ENSGALG00000003385	LSM4	96	86.765	ENSGAFG00000004903	lsm4	55	95.890	Gambusia_affinis
ENSGALG00000003385	LSM4	69	98.947	ENSGACG00000008140	lsm4	59	100.000	Gasterosteus_aculeatus
ENSGALG00000003385	LSM4	100	99.275	ENSGAGG00000017812	LSM4	100	99.275	Gopherus_agassizii
ENSGALG00000003385	LSM4	100	89.928	ENSGGOG00000012914	-	100	81.295	Gorilla_gorilla
ENSGALG00000003385	LSM4	96	84.173	ENSHBUG00000008858	lsm4	61	95.413	Haplochromis_burtoni
ENSGALG00000003385	LSM4	100	84.892	ENSHGLG00000006568	LSM4	100	79.137	Heterocephalus_glaber_female
ENSGALG00000003385	LSM4	67	97.849	ENSHGLG00100007894	LSM4	100	97.849	Heterocephalus_glaber_male
ENSGALG00000003385	LSM4	96	88.148	ENSHCOG00000008819	lsm4	62	100.000	Hippocampus_comes
ENSGALG00000003385	LSM4	96	91.045	ENSIPUG00000005368	Lsm4	94	91.045	Ictalurus_punctatus
ENSGALG00000003385	LSM4	100	89.928	ENSSTOG00000016494	LSM4	100	81.295	Ictidomys_tridecemlineatus
ENSGALG00000003385	LSM4	100	87.770	ENSJJAG00000017420	Lsm4	100	79.856	Jaculus_jaculus
ENSGALG00000003385	LSM4	62	98.837	ENSKMAG00000005073	lsm4	61	98.864	Kryptolebias_marmoratus
ENSGALG00000003385	LSM4	72	97.980	ENSLBEG00000027930	lsm4	59	100.000	Labrus_bergylta
ENSGALG00000003385	LSM4	97	97.037	ENSLACG00000015861	LSM4	96	97.037	Latimeria_chalumnae
ENSGALG00000003385	LSM4	96	95.522	ENSLOCG00000002025	lsm4	94	95.522	Lepisosteus_oculatus
ENSGALG00000003385	LSM4	99	78.986	ENSLAFG00000017459	LSM4	99	81.159	Loxodonta_africana
ENSGALG00000003385	LSM4	100	89.928	ENSMFAG00000031194	LSM4	100	81.295	Macaca_fascicularis
ENSGALG00000003385	LSM4	100	89.928	ENSMMUG00000004405	LSM4	100	81.295	Macaca_mulatta
ENSGALG00000003385	LSM4	100	89.928	ENSMNEG00000042899	LSM4	100	81.295	Macaca_nemestrina
ENSGALG00000003385	LSM4	100	89.928	ENSMLEG00000027948	LSM4	100	81.295	Mandrillus_leucophaeus
ENSGALG00000003385	LSM4	96	88.889	ENSMAMG00000006190	lsm4	94	79.851	Mastacembelus_armatus
ENSGALG00000003385	LSM4	96	84.173	ENSMZEG00005016420	lsm4	60	100.000	Maylandia_zebra
ENSGALG00000003385	LSM4	99	99.275	ENSMGAG00000004976	LSM4	99	99.275	Meleagris_gallopavo
ENSGALG00000003385	LSM4	100	89.209	ENSMICG00000000222	LSM4	100	80.576	Microcebus_murinus
ENSGALG00000003385	LSM4	100	75.362	ENSMOCG00000020861	Lsm4	100	75.362	Microtus_ochrogaster
ENSGALG00000003385	LSM4	89	95.968	ENSMODG00000015044	-	100	95.968	Monodelphis_domestica
ENSGALG00000003385	LSM4	96	82.353	ENSMALG00000018159	lsm4	62	98.864	Monopterus_albus
ENSGALG00000003385	LSM4	100	75.362	MGP_CAROLIEiJ_G0031158	Lsm4	100	75.362	Mus_caroli
ENSGALG00000003385	LSM4	100	75.362	ENSMUSG00000031848	Lsm4	100	75.362	Mus_musculus
ENSGALG00000003385	LSM4	100	75.362	MGP_PahariEiJ_G0021623	Lsm4	100	75.362	Mus_pahari
ENSGALG00000003385	LSM4	100	75.362	MGP_SPRETEiJ_G0032276	Lsm4	100	75.362	Mus_spretus
ENSGALG00000003385	LSM4	100	89.928	ENSMPUG00000015589	LSM4	100	81.295	Mustela_putorius_furo
ENSGALG00000003385	LSM4	99	89.855	ENSMLUG00000004010	LSM4	99	81.159	Myotis_lucifugus
ENSGALG00000003385	LSM4	100	87.770	ENSNGAG00000008644	Lsm4	100	79.137	Nannospalax_galili
ENSGALG00000003385	LSM4	71	97.959	ENSNBRG00000022150	lsm4	54	100.000	Neolamprologus_brichardi
ENSGALG00000003385	LSM4	89	75.806	ENSMEUG00000013229	LSM4	100	77.419	Notamacropus_eugenii
ENSGALG00000003385	LSM4	89	82.258	ENSOPRG00000005575	LSM4	100	73.984	Ochotona_princeps
ENSGALG00000003385	LSM4	100	68.345	ENSODEG00000011712	-	100	68.345	Octodon_degus
ENSGALG00000003385	LSM4	100	88.489	ENSODEG00000020549	-	100	79.856	Octodon_degus
ENSGALG00000003385	LSM4	100	81.884	ENSODEG00000004519	-	100	71.223	Octodon_degus
ENSGALG00000003385	LSM4	96	83.571	ENSONIG00000012724	lsm4	60	100.000	Oreochromis_niloticus
ENSGALG00000003385	LSM4	80	94.783	ENSOANG00000007434	LSM4	99	94.783	Ornithorhynchus_anatinus
ENSGALG00000003385	LSM4	100	86.232	ENSORLG00000008391	lsm4	95	83.333	Oryzias_latipes
ENSGALG00000003385	LSM4	100	86.232	ENSORLG00020014829	lsm4	95	83.333	Oryzias_latipes_hni
ENSGALG00000003385	LSM4	100	86.232	ENSORLG00015010205	lsm4	95	83.333	Oryzias_latipes_hsok
ENSGALG00000003385	LSM4	100	85.507	ENSOMEG00000003606	lsm4	95	82.609	Oryzias_melastigma
ENSGALG00000003385	LSM4	72	96.970	ENSOGAG00000027992	LSM4	89	80.000	Otolemur_garnettii
ENSGALG00000003385	LSM4	63	98.851	ENSOARG00000012553	LSM4	94	79.832	Ovis_aries
ENSGALG00000003385	LSM4	100	89.928	ENSPPAG00000044045	-	100	81.295	Pan_paniscus
ENSGALG00000003385	LSM4	100	89.928	ENSPPRG00000018264	LSM4	100	81.295	Panthera_pardus
ENSGALG00000003385	LSM4	99	89.855	ENSPTIG00000006306	LSM4	100	81.159	Panthera_tigris_altaica
ENSGALG00000003385	LSM4	100	89.928	ENSPTRG00000031470	LSM4	100	81.295	Pan_troglodytes
ENSGALG00000003385	LSM4	100	89.928	ENSPANG00000014399	LSM4	100	81.295	Papio_anubis
ENSGALG00000003385	LSM4	96	92.481	ENSPKIG00000006154	lsm4	94	92.481	Paramormyrops_kingsleyae
ENSGALG00000003385	LSM4	99	98.540	ENSPSIG00000012358	LSM4	100	98.540	Pelodiscus_sinensis
ENSGALG00000003385	LSM4	100	75.362	ENSPEMG00000001358	Lsm4	100	75.362	Peromyscus_maniculatus_bairdii
ENSGALG00000003385	LSM4	96	88.235	ENSPLAG00000016267	lsm4	62	100.000	Poecilia_latipinna
ENSGALG00000003385	LSM4	96	87.500	ENSPMEG00000016378	lsm4	63	100.000	Poecilia_mexicana
ENSGALG00000003385	LSM4	100	89.928	ENSPPYG00000009736	LSM4	100	81.295	Pongo_abelii
ENSGALG00000003385	LSM4	89	76.613	ENSPCAG00000008513	LSM4	100	79.032	Procavia_capensis
ENSGALG00000003385	LSM4	100	89.209	ENSPCOG00000019837	LSM4	100	80.576	Propithecus_coquereli
ENSGALG00000003385	LSM4	100	89.928	ENSPVAG00000015383	LSM4	100	81.295	Pteropus_vampyrus
ENSGALG00000003385	LSM4	96	84.173	ENSPNYG00000016794	lsm4	60	100.000	Pundamilia_nyererei
ENSGALG00000003385	LSM4	96	89.474	ENSPNAG00000016598	lsm4	99	85.714	Pygocentrus_nattereri
ENSGALG00000003385	LSM4	100	75.362	ENSRNOG00000019572	Lsm4	100	75.362	Rattus_norvegicus
ENSGALG00000003385	LSM4	100	89.928	ENSRBIG00000024717	LSM4	100	81.295	Rhinopithecus_bieti
ENSGALG00000003385	LSM4	100	89.928	ENSRROG00000045706	LSM4	100	81.295	Rhinopithecus_roxellana
ENSGALG00000003385	LSM4	60	40.860	YER112W	LSM4	51	40.625	Saccharomyces_cerevisiae
ENSGALG00000003385	LSM4	90	88.800	ENSSBOG00000022455	LSM4	100	79.200	Saimiri_boliviensis_boliviensis
ENSGALG00000003385	LSM4	100	96.403	ENSSHAG00000011559	LSM4	100	96.403	Sarcophilus_harrisii
ENSGALG00000003385	LSM4	96	90.226	ENSSFOG00015021067	lsm4	94	90.226	Scleropages_formosus
ENSGALG00000003385	LSM4	72	96.970	ENSSMAG00000021020	lsm4	87	80.769	Scophthalmus_maximus
ENSGALG00000003385	LSM4	72	97.980	ENSSDUG00000009588	lsm4	53	100.000	Seriola_dumerili
ENSGALG00000003385	LSM4	72	97.980	ENSSLDG00000006827	lsm4	52	100.000	Seriola_lalandi_dorsalis
ENSGALG00000003385	LSM4	93	84.848	ENSSPUG00000010166	LSM4	56	100.000	Sphenodon_punctatus
ENSGALG00000003385	LSM4	72	97.980	ENSSPAG00000011615	lsm4	58	100.000	Stegastes_partitus
ENSGALG00000003385	LSM4	100	89.928	ENSSSCG00000034314	LSM4	100	81.295	Sus_scrofa
ENSGALG00000003385	LSM4	96	86.765	ENSTRUG00000021737	lsm4	62	97.727	Takifugu_rubripes
ENSGALG00000003385	LSM4	96	83.824	ENSTNIG00000010191	lsm4	94	83.824	Tetraodon_nigroviridis
ENSGALG00000003385	LSM4	99	89.855	ENSUAMG00000000665	LSM4	91	97.273	Ursus_americanus
ENSGALG00000003385	LSM4	100	89.928	ENSUMAG00000009013	LSM4	100	81.295	Ursus_maritimus
ENSGALG00000003385	LSM4	99	89.855	ENSVVUG00000008136	LSM4	71	81.159	Vulpes_vulpes
ENSGALG00000003385	LSM4	100	94.928	ENSXETG00000024933	lsm4	100	94.928	Xenopus_tropicalis