EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSGALG00000004123 (Gene tree)
Gene ID: 419189
Gene Symbol: PABPC1L
Alias: C20orf119|PABPC1L1|dJ1069P2.3|ePAB
Full Name: poly(A) binding protein cytoplasmic 1 like
Gene Type: protein_coding
Species: Gallus_gallus
Status: putative
Strand: Minus strand
Length: 9896 bases
Position: chr20:5231078-5240973
Accession: 419189
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGALP00000006555	PABP	PF00658.18	2.4e-29	1	1
ENSGALP00000051919	RRM_5	PF13893.6	6e-08	1	1
ENSGALP00000006555	RRM_5	PF13893.6	2.5e-07	1	1
ENSGALP00000051919	RRM_1	PF00076.22	1.2e-88	1	4
ENSGALP00000051919	RRM_1	PF00076.22	1.2e-88	2	4
ENSGALP00000051919	RRM_1	PF00076.22	1.2e-88	3	4
ENSGALP00000051919	RRM_1	PF00076.22	1.2e-88	4	4
ENSGALP00000006555	RRM_1	PF00076.22	3.5e-81	1	4
ENSGALP00000006555	RRM_1	PF00076.22	3.5e-81	2	4
ENSGALP00000006555	RRM_1	PF00076.22	3.5e-81	3	4
ENSGALP00000006555	RRM_1	PF00076.22	3.5e-81	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGALT00000006565	PABPC1L-202	1557	-	ENSGALP00000006555	518 (aa)	-	E1BWJ7
ENSGALT00000071517	PABPC1L-201	2221	-	ENSGALP00000051919	421 (aa)	XP_015152220	A0A1D5PGJ6

Gene Model

Click here to download ENSGALG00000004123's gene model file

Pathways

Pathway ID	Pathway Name	Source
gga03013	RNA transport	KEGG
gga03015	mRNA surveillance pathway	KEGG
gga03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSGALG00000004123's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGALG00000004123	PABPC1L	99	83.213	ENSG00000101104	PABPC1L	98	82.716	Homo_sapiens
ENSGALG00000004123	PABPC1L	99	77.619	ENSAPOG00000010842	pabpc1l	86	76.019	Acanthochromis_polyacanthus
ENSGALG00000004123	PABPC1L	100	85.273	ENSAMEG00000004099	PABPC1L	80	83.333	Ailuropoda_melanoleuca
ENSGALG00000004123	PABPC1L	98	80.193	ENSACIG00000021004	-	99	76.517	Amphilophus_citrinellus
ENSGALG00000004123	PABPC1L	99	77.619	ENSAOCG00000006167	-	86	75.238	Amphiprion_ocellaris
ENSGALG00000004123	PABPC1L	99	77.619	ENSAPEG00000010558	-	98	81.690	Amphiprion_percula
ENSGALG00000004123	PABPC1L	99	80.048	ENSATEG00000007428	pabpc1l	96	67.065	Anabas_testudineus
ENSGALG00000004123	PABPC1L	98	94.976	ENSAPLG00000008415	PABPC1L	99	94.976	Anas_platyrhynchos
ENSGALG00000004123	PABPC1L	98	91.283	ENSACAG00000011841	PABPC1L	82	88.517	Anolis_carolinensis
ENSGALG00000004123	PABPC1L	99	82.254	ENSANAG00000026826	PABPC1L	97	69.072	Aotus_nancymaae
ENSGALG00000004123	PABPC1L	99	80.048	ENSACLG00000024791	pabpc1l	88	74.830	Astatotilapia_calliptera
ENSGALG00000004123	PABPC1L	98	84.262	ENSAMXG00000013552	pabpc1l	85	78.231	Astyanax_mexicanus
ENSGALG00000004123	PABPC1L	92	92.857	ENSBTAG00000055300	-	100	92.857	Bos_taurus
ENSGALG00000004123	PABPC1L	90	76.518	ENSBTAG00000016849	PABPC1L	86	70.357	Bos_taurus
ENSGALG00000004123	PABPC1L	99	82.734	ENSCJAG00000017628	PABPC1L	97	69.416	Callithrix_jacchus
ENSGALG00000004123	PABPC1L	87	81.034	ENSCJAG00000038506	-	100	81.034	Callithrix_jacchus
ENSGALG00000004123	PABPC1L	99	84.211	ENSCAFG00000009573	PABPC1L	99	80.435	Canis_familiaris
ENSGALG00000004123	PABPC1L	99	84.652	ENSCAFG00020013828	PABPC1L	97	70.812	Canis_lupus_dingo
ENSGALG00000004123	PABPC1L	99	85.372	ENSCHIG00000025759	PABPC1L	86	71.033	Capra_hircus
ENSGALG00000004123	PABPC1L	99	82.734	ENSTSYG00000006645	PABPC1L	97	69.931	Carlito_syrichta
ENSGALG00000004123	PABPC1L	95	77.876	ENSCAPG00000014519	PABPC1L	99	65.602	Cavia_aperea
ENSGALG00000004123	PABPC1L	98	83.146	ENSCPOG00000013633	PABPC1L	86	83.146	Cavia_porcellus
ENSGALG00000004123	PABPC1L	98	85.227	ENSCCAG00000023338	PABPC1L	97	69.759	Cebus_capucinus
ENSGALG00000004123	PABPC1L	99	83.453	ENSCATG00000034065	PABPC1L	97	70.275	Cercocebus_atys
ENSGALG00000004123	PABPC1L	98	82.955	ENSCLAG00000005298	PABPC1L	98	66.441	Chinchilla_lanigera
ENSGALG00000004123	PABPC1L	99	83.213	ENSCSAG00000014242	PABPC1L	97	69.931	Chlorocebus_sabaeus
ENSGALG00000004123	PABPC1L	83	82.836	ENSCPBG00000007810	-	94	82.836	Chrysemys_picta_bellii
ENSGALG00000004123	PABPC1L	98	94.915	ENSCPBG00000017755	-	98	94.019	Chrysemys_picta_bellii
ENSGALG00000004123	PABPC1L	98	73.404	ENSCING00000002796	-	76	73.404	Ciona_intestinalis
ENSGALG00000004123	PABPC1L	98	76.667	ENSCSAVG00000004246	-	90	72.143	Ciona_savignyi
ENSGALG00000004123	PABPC1L	98	72.727	ENSCSAVG00000003102	-	100	81.879	Ciona_savignyi
ENSGALG00000004123	PABPC1L	99	83.453	ENSCANG00000037530	PABPC1L	97	68.276	Colobus_angolensis_palliatus
ENSGALG00000004123	PABPC1L	99	76.259	ENSCGRG00001021938	Pabpc1l	99	64.274	Cricetulus_griseus_chok1gshd
ENSGALG00000004123	PABPC1L	99	76.259	ENSCGRG00000007946	Pabpc1l	99	64.274	Cricetulus_griseus_crigri
ENSGALG00000004123	PABPC1L	99	77.404	ENSCSEG00000021295	pabpc1l	98	69.485	Cynoglossus_semilaevis
ENSGALG00000004123	PABPC1L	98	81.114	ENSCVAG00000015943	-	99	79.470	Cyprinodon_variegatus
ENSGALG00000004123	PABPC1L	98	82.126	ENSDARG00000002597	pabpc1l	88	88.462	Danio_rerio
ENSGALG00000004123	PABPC1L	98	85.714	ENSDNOG00000048450	PABPC1L	98	71.821	Dasypus_novemcinctus
ENSGALG00000004123	PABPC1L	99	81.055	ENSDORG00000001067	Pabpc1l	98	68.503	Dipodomys_ordii
ENSGALG00000004123	PABPC1L	92	82.927	ENSETEG00000009969	PABPC1L	56	82.805	Echinops_telfairi
ENSGALG00000004123	PABPC1L	77	82.143	ENSEASG00005023407	-	67	82.143	Equus_asinus_asinus
ENSGALG00000004123	PABPC1L	92	91.667	ENSEASG00005023408	-	100	91.667	Equus_asinus_asinus
ENSGALG00000004123	PABPC1L	90	82.828	ENSECAG00000040139	-	81	77.632	Equus_caballus
ENSGALG00000004123	PABPC1L	98	82.725	ENSEEUG00000005978	PABPC1L	85	79.376	Erinaceus_europaeus
ENSGALG00000004123	PABPC1L	98	81.884	ENSELUG00000001811	pabpc1l	95	74.579	Esox_lucius
ENSGALG00000004123	PABPC1L	99	84.892	ENSFCAG00000011692	PABPC1L	98	70.396	Felis_catus
ENSGALG00000004123	PABPC1L	98	94.915	ENSFALG00000005372	PABPC1L	70	94.915	Ficedula_albicollis
ENSGALG00000004123	PABPC1L	99	80.576	ENSFDAG00000008291	PABPC1L	98	71.530	Fukomys_damarensis
ENSGALG00000004123	PABPC1L	98	81.356	ENSFHEG00000003398	pabpc1l	96	67.063	Fundulus_heteroclitus
ENSGALG00000004123	PABPC1L	98	81.522	ENSGMOG00000004437	pabpc1l	84	81.111	Gadus_morhua
ENSGALG00000004123	PABPC1L	99	74.393	ENSGAFG00000021057	pabpc1l	88	72.345	Gambusia_affinis
ENSGALG00000004123	PABPC1L	98	80.340	ENSGACG00000002792	pabpc1l	83	77.404	Gasterosteus_aculeatus
ENSGALG00000004123	PABPC1L	98	95.157	ENSGAGG00000000589	PABPC1L	94	90.703	Gopherus_agassizii
ENSGALG00000004123	PABPC1L	99	83.213	ENSGGOG00000004584	PABPC1L	97	70.103	Gorilla_gorilla
ENSGALG00000004123	PABPC1L	99	80.048	ENSHBUG00000006134	pabpc1l	95	71.667	Haplochromis_burtoni
ENSGALG00000004123	PABPC1L	98	82.022	ENSHGLG00000008434	PABPC1L	98	68.503	Heterocephalus_glaber_female
ENSGALG00000004123	PABPC1L	98	82.022	ENSHGLG00100012151	PABPC1L	98	68.503	Heterocephalus_glaber_male
ENSGALG00000004123	PABPC1L	87	86.517	ENSHGLG00100019506	-	100	86.517	Heterocephalus_glaber_male
ENSGALG00000004123	PABPC1L	97	80.000	ENSHCOG00000009270	pabpc1l	99	75.952	Hippocampus_comes
ENSGALG00000004123	PABPC1L	87	62.644	ENSIPUG00000006760	-	88	62.644	Ictalurus_punctatus
ENSGALG00000004123	PABPC1L	64	60.000	ENSIPUG00000005537	-	100	60.000	Ictalurus_punctatus
ENSGALG00000004123	PABPC1L	87	63.218	ENSIPUG00000006780	-	85	63.218	Ictalurus_punctatus
ENSGALG00000004123	PABPC1L	98	85.472	ENSIPUG00000012602	pabpc1l	96	76.036	Ictalurus_punctatus
ENSGALG00000004123	PABPC1L	99	83.213	ENSSTOG00000003739	PABPC1L	98	70.790	Ictidomys_tridecemlineatus
ENSGALG00000004123	PABPC1L	99	63.897	ENSJJAG00000022406	Pabpc1l	99	58.824	Jaculus_jaculus
ENSGALG00000004123	PABPC1L	99	80.191	ENSKMAG00000016847	pabpc1l	82	77.143	Kryptolebias_marmoratus
ENSGALG00000004123	PABPC1L	99	78.860	ENSLBEG00000010084	pabpc1l	96	65.685	Labrus_bergylta
ENSGALG00000004123	PABPC1L	98	87.167	ENSLACG00000005762	PABPC1L	96	83.683	Latimeria_chalumnae
ENSGALG00000004123	PABPC1L	98	86.199	ENSLOCG00000007519	pabpc1l	83	80.272	Lepisosteus_oculatus
ENSGALG00000004123	PABPC1L	98	84.746	ENSLAFG00000003553	PABPC1L	99	79.770	Loxodonta_africana
ENSGALG00000004123	PABPC1L	99	83.453	ENSMFAG00000040365	PABPC1L	97	70.619	Macaca_fascicularis
ENSGALG00000004123	PABPC1L	99	83.453	ENSMNEG00000032298	PABPC1L	88	81.055	Macaca_nemestrina
ENSGALG00000004123	PABPC1L	99	83.453	ENSMLEG00000043139	PABPC1L	97	70.275	Mandrillus_leucophaeus
ENSGALG00000004123	PABPC1L	99	78.860	ENSMAMG00000011854	pabpc1l	93	76.429	Mastacembelus_armatus
ENSGALG00000004123	PABPC1L	99	80.048	ENSMZEG00005023713	pabpc1l	88	74.830	Maylandia_zebra
ENSGALG00000004123	PABPC1L	98	99.516	ENSMGAG00000003674	PABPC1L	99	98.104	Meleagris_gallopavo
ENSGALG00000004123	PABPC1L	99	76.499	ENSMOCG00000013186	Pabpc1l	88	74.092	Microtus_ochrogaster
ENSGALG00000004123	PABPC1L	99	80.048	ENSMMOG00000020574	-	90	88.462	Mola_mola
ENSGALG00000004123	PABPC1L	98	86.683	ENSMODG00000016198	PABPC1L	98	69.326	Monodelphis_domestica
ENSGALG00000004123	PABPC1L	99	78.622	ENSMALG00000021622	pabpc1l	96	75.410	Monopterus_albus
ENSGALG00000004123	PABPC1L	99	76.499	MGP_CAROLIEiJ_G0024627	Pabpc1l	99	61.840	Mus_caroli
ENSGALG00000004123	PABPC1L	99	76.499	ENSMUSG00000054582	Pabpc1l	99	61.840	Mus_musculus
ENSGALG00000004123	PABPC1L	99	76.499	MGP_PahariEiJ_G0026071	Pabpc1l	99	62.075	Mus_pahari
ENSGALG00000004123	PABPC1L	99	76.499	MGP_SPRETEiJ_G0025549	Pabpc1l	99	61.840	Mus_spretus
ENSGALG00000004123	PABPC1L	99	85.851	ENSMPUG00000017646	PABPC1L	85	82.227	Mustela_putorius_furo
ENSGALG00000004123	PABPC1L	99	80.760	ENSMLUG00000006324	PABPC1L	82	78.538	Myotis_lucifugus
ENSGALG00000004123	PABPC1L	99	76.978	ENSNGAG00000010458	Pabpc1l	86	74.580	Nannospalax_galili
ENSGALG00000004123	PABPC1L	99	80.048	ENSNBRG00000016633	pabpc1l	99	77.255	Neolamprologus_brichardi
ENSGALG00000004123	PABPC1L	98	83.777	ENSMEUG00000007905	-	75	89.655	Notamacropus_eugenii
ENSGALG00000004123	PABPC1L	99	82.974	ENSOPRG00000011846	PABPC1L	98	68.836	Ochotona_princeps
ENSGALG00000004123	PABPC1L	98	80.387	ENSODEG00000015482	PABPC1L	97	69.346	Octodon_degus
ENSGALG00000004123	PABPC1L	85	79.375	ENSODEG00000002920	-	97	79.375	Octodon_degus
ENSGALG00000004123	PABPC1L	99	80.048	ENSONIG00000017314	pabpc1l	88	74.830	Oreochromis_niloticus
ENSGALG00000004123	PABPC1L	98	75.240	ENSOANG00000015793	-	99	73.747	Ornithorhynchus_anatinus
ENSGALG00000004123	PABPC1L	91	85.974	ENSOCUG00000003005	PABPC1L	98	70.940	Oryctolagus_cuniculus
ENSGALG00000004123	PABPC1L	99	80.048	ENSORLG00000010322	pabpc1l	99	76.275	Oryzias_latipes
ENSGALG00000004123	PABPC1L	99	80.048	ENSORLG00020021193	pabpc1l	99	76.275	Oryzias_latipes_hni
ENSGALG00000004123	PABPC1L	99	80.048	ENSORLG00015017018	pabpc1l	99	76.078	Oryzias_latipes_hsok
ENSGALG00000004123	PABPC1L	99	75.556	ENSOMEG00000010789	pabpc1l	89	73.274	Oryzias_melastigma
ENSGALG00000004123	PABPC1L	98	83.777	ENSOGAG00000032999	PABPC1L	87	80.000	Otolemur_garnettii
ENSGALG00000004123	PABPC1L	99	85.132	ENSOARG00000004578	PABPC1L	97	70.275	Ovis_aries
ENSGALG00000004123	PABPC1L	99	83.453	ENSPPAG00000039677	PABPC1L	97	71.306	Pan_paniscus
ENSGALG00000004123	PABPC1L	92	73.765	ENSPPRG00000019327	-	98	73.765	Panthera_pardus
ENSGALG00000004123	PABPC1L	98	84.672	ENSPTIG00000006524	PABPC1L	99	70.396	Panthera_tigris_altaica
ENSGALG00000004123	PABPC1L	92	83.025	ENSPTRG00000013531	PABPC1L	98	83.025	Pan_troglodytes
ENSGALG00000004123	PABPC1L	99	83.453	ENSPANG00000018788	PABPC1L	87	81.055	Papio_anubis
ENSGALG00000004123	PABPC1L	78	85.496	ENSPKIG00000016810	-	93	85.496	Paramormyrops_kingsleyae
ENSGALG00000004123	PABPC1L	98	83.535	ENSPKIG00000007322	pabpc1l	84	82.222	Paramormyrops_kingsleyae
ENSGALG00000004123	PABPC1L	99	93.587	ENSPSIG00000013289	PABPC1L	99	93.587	Pelodiscus_sinensis
ENSGALG00000004123	PABPC1L	92	87.121	ENSPMGG00000023117	pabpc1l	97	83.256	Periophthalmus_magnuspinnatus
ENSGALG00000004123	PABPC1L	98	77.381	ENSPMGG00000023121	-	90	70.408	Periophthalmus_magnuspinnatus
ENSGALG00000004123	PABPC1L	99	76.499	ENSPEMG00000020671	Pabpc1l	99	64.041	Peromyscus_maniculatus_bairdii
ENSGALG00000004123	PABPC1L	99	80.523	ENSPFOG00000013241	pabpc1l	95	68.151	Poecilia_formosa
ENSGALG00000004123	PABPC1L	99	80.523	ENSPLAG00000017490	-	95	74.349	Poecilia_latipinna
ENSGALG00000004123	PABPC1L	77	89.231	ENSPLAG00000023686	-	92	89.231	Poecilia_latipinna
ENSGALG00000004123	PABPC1L	99	80.523	ENSPMEG00000007677	pabpc1l	86	78.333	Poecilia_mexicana
ENSGALG00000004123	PABPC1L	77	89.231	ENSPMEG00000009185	-	88	89.231	Poecilia_mexicana
ENSGALG00000004123	PABPC1L	98	81.840	ENSPREG00000015886	pabpc1l	99	81.840	Poecilia_reticulata
ENSGALG00000004123	PABPC1L	99	83.213	ENSPPYG00000011042	PABPC1L	97	71.134	Pongo_abelii
ENSGALG00000004123	PABPC1L	90	93.750	ENSPCAG00000011787	-	75	93.750	Procavia_capensis
ENSGALG00000004123	PABPC1L	99	83.213	ENSPCOG00000020630	PABPC1L	99	70.256	Propithecus_coquereli
ENSGALG00000004123	PABPC1L	99	82.254	ENSPVAG00000012663	PABPC1L	98	68.729	Pteropus_vampyrus
ENSGALG00000004123	PABPC1L	99	80.048	ENSPNYG00000004101	pabpc1l	99	77.255	Pundamilia_nyererei
ENSGALG00000004123	PABPC1L	98	75.787	ENSPNAG00000021248	pabpc1l	88	69.841	Pygocentrus_nattereri
ENSGALG00000004123	PABPC1L	99	76.019	ENSRNOG00000012750	Pabpc1l	98	63.932	Rattus_norvegicus
ENSGALG00000004123	PABPC1L	99	83.213	ENSRBIG00000035381	PABPC1L	97	70.447	Rhinopithecus_bieti
ENSGALG00000004123	PABPC1L	99	82.974	ENSRROG00000044498	PABPC1L	97	70.790	Rhinopithecus_roxellana
ENSGALG00000004123	PABPC1L	99	82.734	ENSSBOG00000009532	-	97	69.244	Saimiri_boliviensis_boliviensis
ENSGALG00000004123	PABPC1L	96	81.404	ENSSHAG00000011446	PABPC1L	100	78.914	Sarcophilus_harrisii
ENSGALG00000004123	PABPC1L	98	85.956	ENSSFOG00015017304	pabpc1l	85	80.638	Scleropages_formosus
ENSGALG00000004123	PABPC1L	99	78.860	ENSSMAG00000010516	pabpc1l	100	84.286	Scophthalmus_maximus
ENSGALG00000004123	PABPC1L	99	80.048	ENSSDUG00000014743	pabpc1l	99	72.889	Seriola_dumerili
ENSGALG00000004123	PABPC1L	98	86.603	ENSSLDG00000006981	pabpc1l	98	86.603	Seriola_lalandi_dorsalis
ENSGALG00000004123	PABPC1L	98	92.494	ENSSPUG00000004233	PABPC1L	84	87.755	Sphenodon_punctatus
ENSGALG00000004123	PABPC1L	99	77.143	ENSSPAG00000017137	pabpc1l	95	70.787	Stegastes_partitus
ENSGALG00000004123	PABPC1L	99	84.412	ENSSSCG00000007382	PABPC1L	98	70.345	Sus_scrofa
ENSGALG00000004123	PABPC1L	98	92.706	ENSTGUG00000005114	PABPC1L	85	88.742	Taeniopygia_guttata
ENSGALG00000004123	PABPC1L	99	77.011	ENSTRUG00000011085	pabpc1l	93	65.913	Takifugu_rubripes
ENSGALG00000004123	PABPC1L	99	73.973	ENSTNIG00000017903	pabpc1l	95	73.068	Tetraodon_nigroviridis
ENSGALG00000004123	PABPC1L	91	84.247	ENSTBEG00000002851	PABPC1L	64	82.772	Tupaia_belangeri
ENSGALG00000004123	PABPC1L	99	82.494	ENSTTRG00000007618	PABPC1L	96	67.395	Tursiops_truncatus
ENSGALG00000004123	PABPC1L	99	85.372	ENSUAMG00000017682	PABPC1L	98	74.731	Ursus_americanus
ENSGALG00000004123	PABPC1L	98	81.543	ENSUMAG00000025436	PABPC1L	93	81.543	Ursus_maritimus
ENSGALG00000004123	PABPC1L	99	84.652	ENSVVUG00000018939	PABPC1L	97	73.111	Vulpes_vulpes
ENSGALG00000004123	PABPC1L	98	83.535	ENSXETG00000022831	pabpc1l	85	81.053	Xenopus_tropicalis
ENSGALG00000004123	PABPC1L	99	80.048	ENSXCOG00000005459	pabpc1l	99	84.397	Xiphophorus_couchianus
ENSGALG00000004123	PABPC1L	99	80.048	ENSXMAG00000017135	pabpc1l	95	73.792	Xiphophorus_maculatus