EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGALG00000004587 (Gene tree)
Gene ID: 424439
Gene Symbol: RC3H1
Alias: KIAA2025|RNF198|RP5-1198E17.5|roquin
Full Name: ring finger and CCCH-type domains 1
Gene Type: protein_coding
Species: Gallus_gallus
Status: putative
Strand: Plus strand
Length: 39015 bases
Position: chr8:7719525-7758539
Accession: 424439
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGALP00000058429	zf-CCCH	PF00642.24	9.1e-05	1	1
ENSGALP00000047084	zf-CCCH	PF00642.24	0.00015	1	1
ENSGALP00000007286	zf-CCCH	PF00642.24	0.00016	1	1
ENSGALP00000069768	zf-CCCH	PF00642.24	0.00016	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGALT00000048313	RC3H1-204	5875	-	ENSGALP00000058429	488 (aa)	-	A0A1D5PZL5
ENSGALT00000007298	RC3H1-201	3805	-	ENSGALP00000007286	1114 (aa)	XP_015146024	E1BZI9
ENSGALT00000050476	RC3H1-203	3814	-	ENSGALP00000047084	1066 (aa)	XP_015146027	A0A1D5P331
ENSGALT00000104159	RC3H1-202	3958	-	ENSGALP00000069768	1114 (aa)	XP_015146024	UPI0002C875E3

Gene Model

Click here to download ENSGALG00000004587's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGALG00000004587's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGALG00000004587	RC3H1	100	87.898	ENSG00000135870	RC3H1	100	87.898	Homo_sapiens
ENSGALG00000004587	RC3H1	100	86.918	ENSAMEG00000015657	RC3H1	100	87.456	Ailuropoda_melanoleuca
ENSGALG00000004587	RC3H1	100	95.443	ENSAPLG00000005341	RC3H1	100	95.443	Anas_platyrhynchos
ENSGALG00000004587	RC3H1	100	85.377	ENSACAG00000015271	RC3H1	100	85.289	Anolis_carolinensis
ENSGALG00000004587	RC3H1	100	87.029	ENSANAG00000036716	RC3H1	100	87.117	Aotus_nancymaae
ENSGALG00000004587	RC3H1	100	87.179	ENSBTAG00000052708	RC3H1	100	87.721	Bos_taurus
ENSGALG00000004587	RC3H1	100	86.766	ENSCJAG00000009106	RC3H1	100	86.854	Callithrix_jacchus
ENSGALG00000004587	RC3H1	100	86.655	ENSCAFG00000014434	RC3H1	100	87.193	Canis_familiaris
ENSGALG00000004587	RC3H1	100	86.579	ENSCAFG00020017112	RC3H1	99	97.303	Canis_lupus_dingo
ENSGALG00000004587	RC3H1	100	87.434	ENSCHIG00000002873	RC3H1	100	87.975	Capra_hircus
ENSGALG00000004587	RC3H1	99	85.601	ENSTSYG00000003913	RC3H1	99	86.053	Carlito_syrichta
ENSGALG00000004587	RC3H1	100	83.743	ENSCPOG00000004349	RC3H1	100	83.743	Cavia_porcellus
ENSGALG00000004587	RC3H1	100	85.539	ENSCCAG00000025652	RC3H1	100	85.627	Cebus_capucinus
ENSGALG00000004587	RC3H1	100	87.467	ENSCATG00000033497	RC3H1	100	87.467	Cercocebus_atys
ENSGALG00000004587	RC3H1	100	85.789	ENSCLAG00000011267	RC3H1	100	85.789	Chinchilla_lanigera
ENSGALG00000004587	RC3H1	95	87.615	ENSCSAG00000011823	RC3H1	84	87.615	Chlorocebus_sabaeus
ENSGALG00000004587	RC3H1	100	90.111	ENSCPBG00000014670	RC3H1	100	96.304	Chrysemys_picta_bellii
ENSGALG00000004587	RC3H1	100	87.555	ENSCANG00000032120	RC3H1	100	87.555	Colobus_angolensis_palliatus
ENSGALG00000004587	RC3H1	100	85.048	ENSCGRG00001020812	Rc3h1	100	85.589	Cricetulus_griseus_chok1gshd
ENSGALG00000004587	RC3H1	100	85.048	ENSCGRG00000011952	Rc3h1	100	85.589	Cricetulus_griseus_crigri
ENSGALG00000004587	RC3H1	60	85.473	ENSDNOG00000011494	RC3H1	99	81.659	Dasypus_novemcinctus
ENSGALG00000004587	RC3H1	100	85.689	ENSDORG00000004855	Rc3h1	100	86.140	Dipodomys_ordii
ENSGALG00000004587	RC3H1	85	87.081	ENSETEG00000012064	RC3H1	87	87.933	Echinops_telfairi
ENSGALG00000004587	RC3H1	100	86.903	ENSEASG00005017000	RC3H1	100	87.533	Equus_asinus_asinus
ENSGALG00000004587	RC3H1	100	86.903	ENSECAG00000021208	RC3H1	100	87.533	Equus_caballus
ENSGALG00000004587	RC3H1	89	81.076	ENSEEUG00000014861	RC3H1	88	81.076	Erinaceus_europaeus
ENSGALG00000004587	RC3H1	100	87.281	ENSFCAG00000014924	RC3H1	100	87.818	Felis_catus
ENSGALG00000004587	RC3H1	100	93.246	ENSFALG00000002947	RC3H1	100	93.246	Ficedula_albicollis
ENSGALG00000004587	RC3H1	100	86.404	ENSFDAG00000013303	RC3H1	100	86.404	Fukomys_damarensis
ENSGALG00000004587	RC3H1	93	96.522	ENSGAGG00000018194	RC3H1	100	96.522	Gopherus_agassizii
ENSGALG00000004587	RC3H1	100	81.048	ENSGGOG00000005735	RC3H1	100	81.048	Gorilla_gorilla
ENSGALG00000004587	RC3H1	89	81.952	ENSHGLG00000004183	-	100	81.952	Heterocephalus_glaber_female
ENSGALG00000004587	RC3H1	100	85.614	ENSHGLG00100008577	RC3H1	100	85.614	Heterocephalus_glaber_male
ENSGALG00000004587	RC3H1	100	86.040	ENSSTOG00000016033	RC3H1	100	86.404	Ictidomys_tridecemlineatus
ENSGALG00000004587	RC3H1	100	85.237	ENSJJAG00000018915	Rc3h1	100	85.777	Jaculus_jaculus
ENSGALG00000004587	RC3H1	100	73.958	ENSLACG00000016186	RC3H1	100	77.463	Latimeria_chalumnae
ENSGALG00000004587	RC3H1	97	87.319	ENSLAFG00000004367	RC3H1	100	87.873	Loxodonta_africana
ENSGALG00000004587	RC3H1	100	87.292	ENSMFAG00000033725	RC3H1	100	87.292	Macaca_fascicularis
ENSGALG00000004587	RC3H1	100	88.074	ENSMMUG00000000630	RC3H1	100	88.074	Macaca_mulatta
ENSGALG00000004587	RC3H1	100	87.379	ENSMNEG00000035968	RC3H1	100	87.379	Macaca_nemestrina
ENSGALG00000004587	RC3H1	100	87.467	ENSMLEG00000037455	RC3H1	100	87.467	Mandrillus_leucophaeus
ENSGALG00000004587	RC3H1	100	83.333	ENSMAUG00000020864	Rc3h1	100	83.904	Mesocricetus_auratus
ENSGALG00000004587	RC3H1	100	86.918	ENSMICG00000003000	RC3H1	100	87.456	Microcebus_murinus
ENSGALG00000004587	RC3H1	93	83.491	ENSMOCG00000016587	Rc3h1	98	84.072	Microtus_ochrogaster
ENSGALG00000004587	RC3H1	100	86.053	ENSMODG00000004289	RC3H1	100	86.591	Monodelphis_domestica
ENSGALG00000004587	RC3H1	100	84.974	MGP_CAROLIEiJ_G0014756	Rc3h1	100	85.062	Mus_caroli
ENSGALG00000004587	RC3H1	100	85.651	ENSMUSG00000040423	Rc3h1	100	85.651	Mus_musculus
ENSGALG00000004587	RC3H1	100	85.149	MGP_PahariEiJ_G0027992	Rc3h1	100	85.149	Mus_pahari
ENSGALG00000004587	RC3H1	100	85.651	MGP_SPRETEiJ_G0015563	Rc3h1	100	85.651	Mus_spretus
ENSGALG00000004587	RC3H1	100	86.655	ENSMPUG00000004747	RC3H1	100	87.357	Mustela_putorius_furo
ENSGALG00000004587	RC3H1	100	85.589	ENSMLUG00000011127	RC3H1	100	86.128	Myotis_lucifugus
ENSGALG00000004587	RC3H1	100	85.664	ENSNGAG00000011135	Rc3h1	100	86.204	Nannospalax_galili
ENSGALG00000004587	RC3H1	100	87.292	ENSNLEG00000015327	RC3H1	100	87.292	Nomascus_leucogenys
ENSGALG00000004587	RC3H1	99	74.408	ENSOPRG00000013068	RC3H1	99	74.956	Ochotona_princeps
ENSGALG00000004587	RC3H1	100	85.965	ENSODEG00000014185	RC3H1	100	85.965	Octodon_degus
ENSGALG00000004587	RC3H1	100	86.957	ENSOANG00000000924	RC3H1	100	87.130	Ornithorhynchus_anatinus
ENSGALG00000004587	RC3H1	99	86.376	ENSOCUG00000004930	RC3H1	98	86.922	Oryctolagus_cuniculus
ENSGALG00000004587	RC3H1	100	79.930	ENSOGAG00000004044	RC3H1	100	80.473	Otolemur_garnettii
ENSGALG00000004587	RC3H1	100	86.475	ENSOARG00000013011	RC3H1	100	87.010	Ovis_aries
ENSGALG00000004587	RC3H1	100	87.292	ENSPPAG00000039253	RC3H1	100	87.292	Pan_paniscus
ENSGALG00000004587	RC3H1	100	87.876	ENSPPRG00000009007	RC3H1	100	88.417	Panthera_pardus
ENSGALG00000004587	RC3H1	100	86.801	ENSPTIG00000015326	RC3H1	100	87.336	Panthera_tigris_altaica
ENSGALG00000004587	RC3H1	100	87.292	ENSPTRG00000001702	RC3H1	100	87.292	Pan_troglodytes
ENSGALG00000004587	RC3H1	100	87.292	ENSPANG00000008886	RC3H1	100	87.292	Papio_anubis
ENSGALG00000004587	RC3H1	100	89.832	ENSPSIG00000016181	RC3H1	100	89.920	Pelodiscus_sinensis
ENSGALG00000004587	RC3H1	100	85.136	ENSPEMG00000011966	Rc3h1	100	85.312	Peromyscus_maniculatus_bairdii
ENSGALG00000004587	RC3H1	58	69.366	ENSPMAG00000000074	rc3h1a	68	67.874	Petromyzon_marinus
ENSGALG00000004587	RC3H1	79	88.974	ENSPCIG00000002058	RC3H1	95	97.982	Phascolarctos_cinereus
ENSGALG00000004587	RC3H1	100	84.750	ENSPPYG00000000490	RC3H1	98	88.612	Pongo_abelii
ENSGALG00000004587	RC3H1	80	92.105	ENSPCAG00000010775	RC3H1	87	92.105	Procavia_capensis
ENSGALG00000004587	RC3H1	79	90.256	ENSPCOG00000021795	RC3H1	96	85.472	Propithecus_coquereli
ENSGALG00000004587	RC3H1	100	78.841	ENSPVAG00000007593	RC3H1	100	79.386	Pteropus_vampyrus
ENSGALG00000004587	RC3H1	97	62.075	ENSPNAG00000023439	rc3h1a	95	90.766	Pygocentrus_nattereri
ENSGALG00000004587	RC3H1	100	87.467	ENSRBIG00000037743	RC3H1	100	87.467	Rhinopithecus_bieti
ENSGALG00000004587	RC3H1	100	87.204	ENSRROG00000036546	RC3H1	100	87.204	Rhinopithecus_roxellana
ENSGALG00000004587	RC3H1	93	86.282	ENSSBOG00000010664	RC3H1	100	86.282	Saimiri_boliviensis_boliviensis
ENSGALG00000004587	RC3H1	100	85.714	ENSSHAG00000007589	RC3H1	100	85.802	Sarcophilus_harrisii
ENSGALG00000004587	RC3H1	87	86.486	ENSSARG00000004660	RC3H1	86	86.486	Sorex_araneus
ENSGALG00000004587	RC3H1	100	84.649	ENSSPUG00000018472	RC3H1	100	84.649	Sphenodon_punctatus
ENSGALG00000004587	RC3H1	100	87.699	ENSSSCG00000015498	RC3H1	100	88.240	Sus_scrofa
ENSGALG00000004587	RC3H1	100	92.952	ENSTGUG00000004090	RC3H1	100	92.952	Taeniopygia_guttata
ENSGALG00000004587	RC3H1	92	90.528	ENSTBEG00000005015	RC3H1	88	91.216	Tupaia_belangeri
ENSGALG00000004587	RC3H1	100	86.427	ENSTTRG00000008572	RC3H1	100	86.964	Tursiops_truncatus
ENSGALG00000004587	RC3H1	100	86.216	ENSUAMG00000019525	RC3H1	100	86.754	Ursus_americanus
ENSGALG00000004587	RC3H1	100	86.918	ENSUMAG00000020087	RC3H1	100	87.456	Ursus_maritimus
ENSGALG00000004587	RC3H1	91	97.748	ENSVPAG00000002591	RC3H1	92	97.748	Vicugna_pacos
ENSGALG00000004587	RC3H1	100	86.439	ENSVVUG00000014201	RC3H1	93	96.018	Vulpes_vulpes
ENSGALG00000004587	RC3H1	100	77.894	ENSXETG00000020030	rc3h1	100	77.807	Xenopus_tropicalis