EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSGALG00000004714 (Gene tree)
Gene ID: 416494
Gene Symbol: CPSF4
Alias: -
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Gallus_gallus
Status: putative
Strand: Plus strand
Length: 6857 bases
Position: chr14:4788949-4795805
Accession: 416494
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGALP00000007498	zf-CCCH	PF00642.24	1.8e-20	1	2
ENSGALP00000007498	zf-CCCH	PF00642.24	1.8e-20	2	2
ENSGALP00000007498	zf-CCHC	PF00098.23	3.6e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGALT00000007510	-	2316	-	ENSGALP00000007498	243 (aa)	-	E1BV31

Gene Model

Click here to download ENSGALG00000004714's gene model file

Pathways

Pathway ID	Pathway Name	Source
gga03015	mRNA surveillance pathway	KEGG
gga05164	Influenza A	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSGALG00000004714's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGALG00000004714	CPSF4	100	95.082	ENSG00000160917	CPSF4	100	99.107	Homo_sapiens
ENSGALG00000004714	CPSF4	64	67.232	ENSAPOG00000004921	cpsf4	100	67.232	Acanthochromis_polyacanthus
ENSGALG00000004714	CPSF4	100	84.758	ENSAMEG00000006252	CPSF4	100	85.874	Ailuropoda_melanoleuca
ENSGALG00000004714	CPSF4	100	86.420	ENSACIG00000009248	cpsf4	100	86.420	Amphilophus_citrinellus
ENSGALG00000004714	CPSF4	100	80.755	ENSAOCG00000019616	cpsf4	100	80.755	Amphiprion_ocellaris
ENSGALG00000004714	CPSF4	100	80.755	ENSAPEG00000011679	cpsf4	100	80.755	Amphiprion_percula
ENSGALG00000004714	CPSF4	100	84.615	ENSATEG00000007010	cpsf4	100	84.615	Anabas_testudineus
ENSGALG00000004714	CPSF4	100	83.271	ENSACAG00000012941	CPSF4	89	85.502	Anolis_carolinensis
ENSGALG00000004714	CPSF4	100	85.130	ENSANAG00000021360	CPSF4	100	86.245	Aotus_nancymaae
ENSGALG00000004714	CPSF4	100	81.070	ENSACLG00000010374	cpsf4	100	81.070	Astatotilapia_calliptera
ENSGALG00000004714	CPSF4	100	80.370	ENSAMXG00000031647	cpsf4	100	81.111	Astyanax_mexicanus
ENSGALG00000004714	CPSF4	100	95.062	ENSBTAG00000002090	CPSF4	100	95.062	Bos_taurus
ENSGALG00000004714	CPSF4	100	85.130	ENSCJAG00000015826	CPSF4	100	86.245	Callithrix_jacchus
ENSGALG00000004714	CPSF4	100	84.758	ENSCAFG00000015036	CPSF4	100	86.617	Canis_familiaris
ENSGALG00000004714	CPSF4	100	78.439	ENSCAFG00020014462	CPSF4	100	80.297	Canis_lupus_dingo
ENSGALG00000004714	CPSF4	100	84.758	ENSCHIG00000014313	CPSF4	100	85.874	Capra_hircus
ENSGALG00000004714	CPSF4	88	87.963	ENSTSYG00000008195	-	99	87.556	Carlito_syrichta
ENSGALG00000004714	CPSF4	100	86.531	ENSTSYG00000014604	-	100	86.531	Carlito_syrichta
ENSGALG00000004714	CPSF4	100	95.492	ENSTSYG00000005712	-	100	95.492	Carlito_syrichta
ENSGALG00000004714	CPSF4	79	82.110	ENSCAPG00000013881	CPSF4	87	83.486	Cavia_aperea
ENSGALG00000004714	CPSF4	100	94.672	ENSCPOG00000001783	CPSF4	100	94.672	Cavia_porcellus
ENSGALG00000004714	CPSF4	100	85.130	ENSCCAG00000028291	CPSF4	100	86.245	Cebus_capucinus
ENSGALG00000004714	CPSF4	100	90.164	ENSCATG00000038440	CPSF4	100	90.164	Cercocebus_atys
ENSGALG00000004714	CPSF4	100	84.758	ENSCLAG00000007050	CPSF4	100	85.874	Chinchilla_lanigera
ENSGALG00000004714	CPSF4	100	85.130	ENSCSAG00000017795	CPSF4	100	86.245	Chlorocebus_sabaeus
ENSGALG00000004714	CPSF4	68	81.325	ENSCPBG00000010269	-	100	81.325	Chrysemys_picta_bellii
ENSGALG00000004714	CPSF4	78	85.648	ENSCPBG00000020869	CPSF4	100	85.648	Chrysemys_picta_bellii
ENSGALG00000004714	CPSF4	96	55.906	ENSCING00000021080	-	97	55.118	Ciona_intestinalis
ENSGALG00000004714	CPSF4	96	53.004	ENSCSAVG00000011469	-	97	53.004	Ciona_savignyi
ENSGALG00000004714	CPSF4	100	89.344	ENSCANG00000019384	CPSF4	100	89.344	Colobus_angolensis_palliatus
ENSGALG00000004714	CPSF4	100	94.672	ENSCGRG00001024184	Cpsf4	100	94.672	Cricetulus_griseus_chok1gshd
ENSGALG00000004714	CPSF4	100	84.758	ENSCGRG00000013892	Cpsf4	100	85.874	Cricetulus_griseus_crigri
ENSGALG00000004714	CPSF4	100	79.623	ENSCSEG00000019055	cpsf4	100	79.623	Cynoglossus_semilaevis
ENSGALG00000004714	CPSF4	100	80.755	ENSCVAG00000016528	cpsf4	100	80.755	Cyprinodon_variegatus
ENSGALG00000004714	CPSF4	100	77.491	ENSDARG00000020217	cpsf4	100	79.705	Danio_rerio
ENSGALG00000004714	CPSF4	100	85.130	ENSDNOG00000006344	CPSF4	100	86.245	Dasypus_novemcinctus
ENSGALG00000004714	CPSF4	79	82.028	ENSDORG00000000742	Cpsf4	100	83.410	Dipodomys_ordii
ENSGALG00000004714	CPSF4	100	52.508	FBgn0015621	Clp	99	53.177	Drosophila_melanogaster
ENSGALG00000004714	CPSF4	77	100.000	ENSETEG00000002608	CPSF4	70	100.000	Echinops_telfairi
ENSGALG00000004714	CPSF4	99	72.131	ENSEBUG00000012552	cpsf4	98	72.131	Eptatretus_burgeri
ENSGALG00000004714	CPSF4	100	94.672	ENSEASG00005002487	CPSF4	100	94.672	Equus_asinus_asinus
ENSGALG00000004714	CPSF4	100	84.758	ENSECAG00000007525	CPSF4	100	85.874	Equus_caballus
ENSGALG00000004714	CPSF4	59	100.000	ENSEEUG00000002158	CPSF4	73	100.000	Erinaceus_europaeus
ENSGALG00000004714	CPSF4	100	79.412	ENSELUG00000011481	cpsf4	100	79.412	Esox_lucius
ENSGALG00000004714	CPSF4	100	84.758	ENSFCAG00000015070	CPSF4	100	85.874	Felis_catus
ENSGALG00000004714	CPSF4	68	57.558	ENSFALG00000012906	-	100	57.558	Ficedula_albicollis
ENSGALG00000004714	CPSF4	100	98.354	ENSFALG00000013799	CPSF4	100	98.354	Ficedula_albicollis
ENSGALG00000004714	CPSF4	89	83.128	ENSFDAG00000014092	CPSF4	100	84.362	Fukomys_damarensis
ENSGALG00000004714	CPSF4	100	79.623	ENSFHEG00000010880	cpsf4	100	79.623	Fundulus_heteroclitus
ENSGALG00000004714	CPSF4	100	81.783	ENSGMOG00000002330	cpsf4	100	81.783	Gadus_morhua
ENSGALG00000004714	CPSF4	99	39.888	ENSGALG00000004441	-	92	39.888	Gallus_gallus
ENSGALG00000004714	CPSF4	100	80.303	ENSGAFG00000010580	cpsf4	100	80.303	Gambusia_affinis
ENSGALG00000004714	CPSF4	100	81.890	ENSGACG00000007792	cpsf4	100	81.890	Gasterosteus_aculeatus
ENSGALG00000004714	CPSF4	75	77.473	ENSGAGG00000020579	-	100	77.473	Gopherus_agassizii
ENSGALG00000004714	CPSF4	100	87.732	ENSGAGG00000021835	CPSF4	100	87.732	Gopherus_agassizii
ENSGALG00000004714	CPSF4	100	85.130	ENSGGOG00000015131	CPSF4	100	86.245	Gorilla_gorilla
ENSGALG00000004714	CPSF4	100	79.623	ENSHBUG00000013699	cpsf4	100	79.623	Haplochromis_burtoni
ENSGALG00000004714	CPSF4	100	83.764	ENSHGLG00000017150	CPSF4	100	84.871	Heterocephalus_glaber_female
ENSGALG00000004714	CPSF4	86	80.508	ENSHGLG00100009215	-	100	81.780	Heterocephalus_glaber_male
ENSGALG00000004714	CPSF4	100	59.671	ENSHGLG00100017302	-	100	59.671	Heterocephalus_glaber_male
ENSGALG00000004714	CPSF4	100	78.868	ENSHCOG00000004397	cpsf4	100	78.868	Hippocampus_comes
ENSGALG00000004714	CPSF4	100	77.860	ENSIPUG00000017147	cpsf4	100	79.705	Ictalurus_punctatus
ENSGALG00000004714	CPSF4	100	95.062	ENSSTOG00000001688	CPSF4	100	95.062	Ictidomys_tridecemlineatus
ENSGALG00000004714	CPSF4	100	84.758	ENSJJAG00000019426	Cpsf4	100	85.874	Jaculus_jaculus
ENSGALG00000004714	CPSF4	100	78.491	ENSKMAG00000015642	cpsf4	100	78.491	Kryptolebias_marmoratus
ENSGALG00000004714	CPSF4	100	82.963	ENSLACG00000010938	CPSF4	100	82.963	Latimeria_chalumnae
ENSGALG00000004714	CPSF4	100	65.306	ENSLACG00000018470	-	100	65.306	Latimeria_chalumnae
ENSGALG00000004714	CPSF4	100	81.784	ENSLOCG00000004814	cpsf4	100	85.130	Lepisosteus_oculatus
ENSGALG00000004714	CPSF4	100	84.387	ENSLAFG00000000159	CPSF4	100	85.502	Loxodonta_africana
ENSGALG00000004714	CPSF4	100	89.344	ENSMFAG00000001462	CPSF4	100	94.764	Macaca_fascicularis
ENSGALG00000004714	CPSF4	100	85.130	ENSMMUG00000019191	CPSF4	100	86.245	Macaca_mulatta
ENSGALG00000004714	CPSF4	100	89.344	ENSMNEG00000032306	CPSF4	100	89.344	Macaca_nemestrina
ENSGALG00000004714	CPSF4	100	90.164	ENSMLEG00000034721	CPSF4	100	90.164	Mandrillus_leucophaeus
ENSGALG00000004714	CPSF4	100	80.899	ENSMAMG00000006244	cpsf4	100	80.899	Mastacembelus_armatus
ENSGALG00000004714	CPSF4	100	79.623	ENSMZEG00005007515	cpsf4	100	79.623	Maylandia_zebra
ENSGALG00000004714	CPSF4	86	99.522	ENSMGAG00000004235	CPSF4	100	99.522	Meleagris_gallopavo
ENSGALG00000004714	CPSF4	100	84.758	ENSMAUG00000021253	Cpsf4	100	85.874	Mesocricetus_auratus
ENSGALG00000004714	CPSF4	100	84.758	ENSMICG00000017429	CPSF4	100	85.874	Microcebus_murinus
ENSGALG00000004714	CPSF4	100	84.758	ENSMOCG00000014901	Cpsf4	100	85.874	Microtus_ochrogaster
ENSGALG00000004714	CPSF4	100	79.699	ENSMMOG00000001813	cpsf4	95	85.455	Mola_mola
ENSGALG00000004714	CPSF4	100	86.245	ENSMODG00000001367	CPSF4	100	87.732	Monodelphis_domestica
ENSGALG00000004714	CPSF4	100	80.150	ENSMALG00000012611	cpsf4	100	80.150	Monopterus_albus
ENSGALG00000004714	CPSF4	100	95.062	MGP_CAROLIEiJ_G0028012	Cpsf4	100	95.062	Mus_caroli
ENSGALG00000004714	CPSF4	100	95.062	ENSMUSG00000029625	Cpsf4	100	95.062	Mus_musculus
ENSGALG00000004714	CPSF4	100	95.062	MGP_PahariEiJ_G0024581	Cpsf4	100	95.062	Mus_pahari
ENSGALG00000004714	CPSF4	100	95.062	MGP_SPRETEiJ_G0029013	Cpsf4	100	95.062	Mus_spretus
ENSGALG00000004714	CPSF4	100	84.758	ENSMPUG00000016508	CPSF4	100	85.874	Mustela_putorius_furo
ENSGALG00000004714	CPSF4	86	94.737	ENSMLUG00000010980	CPSF4	100	94.737	Myotis_lucifugus
ENSGALG00000004714	CPSF4	100	85.130	ENSNGAG00000001567	Cpsf4	100	86.245	Nannospalax_galili
ENSGALG00000004714	CPSF4	90	78.838	ENSNBRG00000003943	cpsf4	98	78.838	Neolamprologus_brichardi
ENSGALG00000004714	CPSF4	100	95.082	ENSNLEG00000011074	CPSF4	100	95.082	Nomascus_leucogenys
ENSGALG00000004714	CPSF4	100	86.245	ENSMEUG00000006955	CPSF4	100	87.732	Notamacropus_eugenii
ENSGALG00000004714	CPSF4	100	84.387	ENSOPRG00000013663	CPSF4	100	85.502	Ochotona_princeps
ENSGALG00000004714	CPSF4	100	84.758	ENSODEG00000011181	-	100	85.874	Octodon_degus
ENSGALG00000004714	CPSF4	98	80.417	ENSODEG00000018283	-	91	80.417	Octodon_degus
ENSGALG00000004714	CPSF4	100	68.966	ENSODEG00000009779	-	100	68.966	Octodon_degus
ENSGALG00000004714	CPSF4	100	79.623	ENSONIG00000008495	cpsf4	100	79.623	Oreochromis_niloticus
ENSGALG00000004714	CPSF4	86	85.470	ENSOANG00000007729	CPSF4	100	85.470	Ornithorhynchus_anatinus
ENSGALG00000004714	CPSF4	100	52.878	ENSOANG00000009568	-	100	52.878	Ornithorhynchus_anatinus
ENSGALG00000004714	CPSF4	100	84.387	ENSOCUG00000002437	CPSF4	70	85.502	Oryctolagus_cuniculus
ENSGALG00000004714	CPSF4	100	80.000	ENSORLG00000022798	cpsf4	100	80.000	Oryzias_latipes
ENSGALG00000004714	CPSF4	100	80.000	ENSORLG00020008548	cpsf4	100	80.000	Oryzias_latipes_hni
ENSGALG00000004714	CPSF4	100	79.623	ENSORLG00015019575	cpsf4	100	79.623	Oryzias_latipes_hsok
ENSGALG00000004714	CPSF4	100	78.868	ENSOMEG00000005176	cpsf4	100	78.868	Oryzias_melastigma
ENSGALG00000004714	CPSF4	100	84.758	ENSOGAG00000010884	CPSF4	100	85.874	Otolemur_garnettii
ENSGALG00000004714	CPSF4	100	76.190	ENSOARG00000018668	CPSF4	100	76.190	Ovis_aries
ENSGALG00000004714	CPSF4	100	85.130	ENSPPAG00000043355	CPSF4	100	86.245	Pan_paniscus
ENSGALG00000004714	CPSF4	100	84.758	ENSPPRG00000003134	CPSF4	100	85.874	Panthera_pardus
ENSGALG00000004714	CPSF4	89	83.884	ENSPTIG00000005604	CPSF4	90	85.124	Panthera_tigris_altaica
ENSGALG00000004714	CPSF4	100	85.130	ENSPTRG00000019453	CPSF4	100	86.245	Pan_troglodytes
ENSGALG00000004714	CPSF4	100	89.344	ENSPANG00000023123	CPSF4	100	89.344	Papio_anubis
ENSGALG00000004714	CPSF4	100	81.752	ENSPKIG00000014278	cpsf4	100	81.752	Paramormyrops_kingsleyae
ENSGALG00000004714	CPSF4	78	85.185	ENSPSIG00000011229	CPSF4	100	85.185	Pelodiscus_sinensis
ENSGALG00000004714	CPSF4	79	65.285	ENSPSIG00000018198	-	100	65.285	Pelodiscus_sinensis
ENSGALG00000004714	CPSF4	100	79.835	ENSPMGG00000017735	cpsf4	100	79.835	Periophthalmus_magnuspinnatus
ENSGALG00000004714	CPSF4	100	84.758	ENSPEMG00000004508	Cpsf4	100	85.874	Peromyscus_maniculatus_bairdii
ENSGALG00000004714	CPSF4	100	86.245	ENSPCIG00000024776	CPSF4	100	87.732	Phascolarctos_cinereus
ENSGALG00000004714	CPSF4	100	80.303	ENSPFOG00000014912	cpsf4	100	80.303	Poecilia_formosa
ENSGALG00000004714	CPSF4	100	80.081	ENSPLAG00000009599	cpsf4	100	80.081	Poecilia_latipinna
ENSGALG00000004714	CPSF4	100	80.303	ENSPMEG00000009790	cpsf4	100	80.303	Poecilia_mexicana
ENSGALG00000004714	CPSF4	100	79.545	ENSPREG00000018166	cpsf4	100	79.545	Poecilia_reticulata
ENSGALG00000004714	CPSF4	86	83.333	ENSPPYG00000017378	CPSF4	100	84.615	Pongo_abelii
ENSGALG00000004714	CPSF4	100	83.643	ENSPCAG00000001892	CPSF4	100	84.758	Procavia_capensis
ENSGALG00000004714	CPSF4	100	84.758	ENSPCOG00000012771	CPSF4	100	85.874	Propithecus_coquereli
ENSGALG00000004714	CPSF4	100	78.067	ENSPVAG00000007531	CPSF4	100	79.182	Pteropus_vampyrus
ENSGALG00000004714	CPSF4	100	79.623	ENSPNYG00000018559	cpsf4	100	79.623	Pundamilia_nyererei
ENSGALG00000004714	CPSF4	100	80.812	ENSPNAG00000003736	cpsf4	100	82.593	Pygocentrus_nattereri
ENSGALG00000004714	CPSF4	100	95.062	ENSRNOG00000000985	Cpsf4	100	95.062	Rattus_norvegicus
ENSGALG00000004714	CPSF4	86	85.043	ENSRBIG00000033886	CPSF4	100	85.043	Rhinopithecus_bieti
ENSGALG00000004714	CPSF4	100	95.082	ENSRROG00000040431	CPSF4	100	95.082	Rhinopithecus_roxellana
ENSGALG00000004714	CPSF4	100	85.130	ENSSBOG00000020493	CPSF4	100	94.764	Saimiri_boliviensis_boliviensis
ENSGALG00000004714	CPSF4	100	86.245	ENSSHAG00000011533	CPSF4	100	87.732	Sarcophilus_harrisii
ENSGALG00000004714	CPSF4	100	83.333	ENSSFOG00015007883	cpsf4	100	83.333	Scleropages_formosus
ENSGALG00000004714	CPSF4	100	86.640	ENSSMAG00000006374	cpsf4	100	86.640	Scophthalmus_maximus
ENSGALG00000004714	CPSF4	100	79.699	ENSSDUG00000018887	cpsf4	100	79.699	Seriola_dumerili
ENSGALG00000004714	CPSF4	100	79.699	ENSSLDG00000019078	cpsf4	100	79.699	Seriola_lalandi_dorsalis
ENSGALG00000004714	CPSF4	86	83.333	ENSSARG00000012416	CPSF4	100	84.615	Sorex_araneus
ENSGALG00000004714	CPSF4	95	64.407	ENSSPUG00000014803	-	97	64.407	Sphenodon_punctatus
ENSGALG00000004714	CPSF4	100	87.361	ENSSPUG00000003549	CPSF4	100	87.361	Sphenodon_punctatus
ENSGALG00000004714	CPSF4	100	87.243	ENSSPAG00000006174	cpsf4	100	87.243	Stegastes_partitus
ENSGALG00000004714	CPSF4	100	94.672	ENSSSCG00000026896	CPSF4	100	94.672	Sus_scrofa
ENSGALG00000004714	CPSF4	100	97.143	ENSTGUG00000007552	CPSF4	100	97.143	Taeniopygia_guttata
ENSGALG00000004714	CPSF4	100	77.567	ENSTRUG00000024220	cpsf4	100	77.567	Takifugu_rubripes
ENSGALG00000004714	CPSF4	100	77.947	ENSTNIG00000006265	cpsf4	100	77.947	Tetraodon_nigroviridis
ENSGALG00000004714	CPSF4	86	74.786	ENSTBEG00000011406	CPSF4	100	75.214	Tupaia_belangeri
ENSGALG00000004714	CPSF4	100	75.836	ENSTTRG00000003007	CPSF4	100	75.836	Tursiops_truncatus
ENSGALG00000004714	CPSF4	91	94.570	ENSUAMG00000008051	CPSF4	85	94.570	Ursus_americanus
ENSGALG00000004714	CPSF4	100	95.062	ENSUMAG00000009474	CPSF4	100	95.062	Ursus_maritimus
ENSGALG00000004714	CPSF4	100	94.672	ENSVVUG00000008824	CPSF4	100	94.262	Vulpes_vulpes
ENSGALG00000004714	CPSF4	100	80.287	ENSXETG00000009892	cpsf4	100	82.437	Xenopus_tropicalis
ENSGALG00000004714	CPSF4	99	61.567	ENSXETG00000004641	cpsf4l	99	61.567	Xenopus_tropicalis
ENSGALG00000004714	CPSF4	100	79.924	ENSXCOG00000016040	cpsf4	100	79.924	Xiphophorus_couchianus
ENSGALG00000004714	CPSF4	100	80.303	ENSXMAG00000024670	cpsf4	100	80.303	Xiphophorus_maculatus